Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Forward (+)

2389123 .. 2391247

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g04500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCACGCCAAGTCCGATTCCGACGTCACGAGCTTAGCGCCGTCGTCGCCGCGATCGCCGAAGCGGCCAGTGTACTATGTCCAAAGCCCATCTAGAGACTCCAACGATGGCGACAAATCCTCCACCATGCACGCCACTCCGGCCTTCAACAGCCCAATGGAAAGCCCCTCTCACCCTTCCTACGGCCGCCATTCCCGGGCCTCCTCCGCCAGCCGCGTCTCCGGCAACTTTAAAGGGAGCCGGAAACGCGGCCATGATAAAGGCTGGCCGGAATGCAAAGTGATTGAGGAAGAAGGGGACTATGATGGGCTCTATGGGGAGAAGGGCCTTTCTAGAAGGTGTCAGATTTTGATGGCTTTGTTTGGCTTCATTGTCATCTTTTCCATTTTCTGCTTGATTCTTTGGGGTGCTGGTAGACCTTACAAAGCTCGGGTGTCTGTTAAGAGCTTAGCTGTGCATAATTTTTATTTTGGGGAAGGATCGGACATGACTGGTGTACCTACAAAGATGGTGACAATGAATTGTTCAGTGAGGATGAGTGTGTACAACCCAGCTACGTTTTTTGGTATTCATGTCAGCTCCGATGCAGTTAACCTTATGTATTCAGAAATTACAGTTGCAACCGGTCAGTTGAAGAAATACTATCAACCAAGAAAGAGTAACCGGATTGTGCTAGTGAACCTCCAAGGAGTGAAGGTACCTTTATATGGGGCTGGAGCAAGCTTAGCAGTCGACGATACCAATGGAGGAGTTCCAATGACACTCGTGTTTGATGTTCGGTCACGAGGGAATGTTGTGGGAAAGCTGGTGAGAACAAAGCACTGGAGGCACGTAAATTGCTCCTTGGTTGTTGACTCTCATAAGACCAAACCCATCACTTTAAAAGCAAGTTCATGCGCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

302

Amino Acids

33.03

Weight (kDa)

9.69

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
Acc16I	TGCGCA	1 cut(s)	898
Acc65I	GGTACC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	697
AccI	GTMKAC	2 cut(s)	415, 732
AccII	CGCG	3 cut(s)	52, 216, 249
AciI	CCGC	6 cut(s)	50, 64, 187, 207, 214, 249
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	4 cut(s)	65, 184, 250, 266
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	4 cut(s)	74, 498, 545, 699
AfiI	CCNNNNNNNGG	3 cut(s)	182, 196, 707
AgeI	ACCGGT	1 cut(s)	623
AgsI	TTSAA	2 cut(s)	148, 634
AluBI	AGCT	8 cut(s)	33, 428, 447, 452, 554, 579, 723, 805
AluI	AGCT	8 cut(s)	33, 428, 447, 452, 554, 579, 723, 805
Alw26I	GTCTC	2 cut(s)	90, 223
AlwI	GGATC	1 cut(s)	487
Ama87I	CYCGRG	2 cut(s)	195, 429
AoxI	GGCC	7 cut(s)	65, 141, 184, 198, 250, 266, 325
AsiGI	ACCGGT	1 cut(s)	623
AsiSI	GCGATCGC	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	697
AspLEI	GCGC	2 cut(s)	40, 899
AspS9I	GGNCC	2 cut(s)	198, 325
AsuC2I	CCSGG	2 cut(s)	196, 197
AsuHPI	GGTGA	3 cut(s)	164, 523, 820
AvaI	CYCGRG	2 cut(s)	195, 429
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BanI	GGYRCC	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	312
BauI	CACGAG	3 cut(s)	28, 764, 783
BccI	CCATC	6 cut(s)	97, 101, 299, 346, 502, 881
BceAI	ACGGC	2 cut(s)	25, 199
BcnI	CCSGG	2 cut(s)	196, 197
BcoDI	GTCTC	2 cut(s)	90, 223
BfaI	CTAG	4 cut(s)	93, 333, 674, 904
BfoI	RGCGCY	1 cut(s)	41
BglI	GCCNNNNNGGC	2 cut(s)	64, 140
BisI	GCNGC	5 cut(s)	50, 65, 187, 214, 250
BlpI	GCTNAGC	3 cut(s)	34, 448, 724
BlsI	GCNGC	5 cut(s)	51, 66, 188, 215, 251
Bme1390I	CCNGG	2 cut(s)	196, 197
BmeT110I	CYCGRG	2 cut(s)	195, 429
BmgT120I	GGNCC	2 cut(s)	198, 325
BmiI	GGNNCC	2 cut(s)	239, 699
BmrFI	CCNGG	2 cut(s)	196, 197
BmsI	GCATC	1 cut(s)	574
BpmI	CTGGAG	2 cut(s)	735, 844
Bpu1102I	GCTNAGC	3 cut(s)	34, 448, 724
BpuMI	CCSGG	2 cut(s)	196, 197
BsaAI	YACGTR	1 cut(s)	832
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	195, 685, 843
BsaWI	WCCGGW	2 cut(s)	623, 663
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 681, 711
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 196, 707
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	3 cut(s)	68, 496, 827
BseDI	CCNNGG	3 cut(s)	195, 685, 843
BseGI	GGATG	1 cut(s)	540
BseLI	CCNNNNNNNGG	3 cut(s)	182, 196, 707
BseNI	ACTGG	3 cut(s)	68, 496, 827
BseRI	GAGGAG	2 cut(s)	193, 762
BseX3I	CGGCCG	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	550
Bsh1236I	CGCG	3 cut(s)	52, 216, 249
Bsh1285I	CGRYCG	2 cut(s)	56, 187
BshFI	GGCC	7 cut(s)	67, 143, 186, 200, 252, 268, 327
BshNI	GGYRCC	1 cut(s)	697
BshTI	ACCGGT	1 cut(s)	623
BsiEI	CGRYCG	2 cut(s)	56, 187
BsiHKCI	CYCGRG	2 cut(s)	195, 429
BsiSI	CCGG	7 cut(s)	140, 196, 222, 241, 269, 624, 664
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	182, 196, 707
BsmAI	GTCTC	2 cut(s)	90, 223
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	7 cut(s)	67, 143, 186, 200, 252, 268, 327
BsoBI	CYCGRG	2 cut(s)	195, 429
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	53, 479
Bsp1720I	GCTNAGC	3 cut(s)	34, 448, 724
BspACI	CCGC	6 cut(s)	50, 64, 187, 207, 214, 249
BspANI	GGCC	7 cut(s)	67, 143, 186, 200, 252, 268, 327
BspFNI	CGCG	3 cut(s)	52, 216, 249
BspLI	GGNNCC	2 cut(s)	239, 699
BspPI	GGATC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	697
BsrFI	RCCGGY	1 cut(s)	623
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	68, 496, 827
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	3 cut(s)	195, 685, 843
BssMI	GATC	2 cut(s)	53, 479
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	3 cut(s)	28, 764, 783
BssT1I	CCWWGG	2 cut(s)	685, 843
Bst2BI	CACGAG	3 cut(s)	28, 764, 783
Bst4CI	ACNGT	1 cut(s)	616
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	543
BstBAI	YACGTR	1 cut(s)	832
BstC8I	GCNNGC	5 cut(s)	6, 132, 211, 266, 721
BstDEI	CTNAG	3 cut(s)	34, 448, 724
BstF5I	GGATG	1 cut(s)	540
BstFNI	CGCG	3 cut(s)	52, 216, 249
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 899
BstKTI	GATC	2 cut(s)	56, 482
BstMAI	GTCTC	2 cut(s)	90, 223
BstMBI	GATC	2 cut(s)	53, 479
BstMCI	CGRYCG	2 cut(s)	56, 187
BstMWI	GCNNNNNNNGC	9 cut(s)	46, 55, 64, 140, 206, 222, 246, 725, 826
BstSCI	CCNGG	2 cut(s)	194, 195
BstUI	CGCG	3 cut(s)	52, 216, 249
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	7 cut(s)	67, 143, 186, 200, 252, 268, 327
BtsCI	GGATG	1 cut(s)	540
BtsIMutI	CAGTG	3 cut(s)	75, 534, 820
Cac8I	GCNNGC	5 cut(s)	6, 132, 211, 266, 721
CfoI	GCGC	2 cut(s)	40, 899
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	2 cut(s)	198, 325
Cfr9I	CCCGGG	1 cut(s)	195
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	4 cut(s)	73, 497, 544, 698
CspAI	ACCGGT	1 cut(s)	623
CviAII	CATG	5 cut(s)	127, 254, 487, 572, 894
CviQI	GTAC	4 cut(s)	73, 497, 544, 698
DdeI	CTNAG	3 cut(s)	34, 448, 724
DpnI	GATC	2 cut(s)	55, 481
DpnII	GATC	2 cut(s)	53, 479
DraI	TTTAAA	2 cut(s)	232, 882
EaeI	YGGCCR	4 cut(s)	65, 184, 250, 266
EagI	CGGCCG	1 cut(s)	184
EciI	GGCGGA	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	685, 843
Eco24I	GRGCYC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	184
Eco88I	CYCGRG	2 cut(s)	195, 429
EcoO109I	RGGNCCY	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	685, 843
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	685, 843
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	5 cut(s)	130, 257, 490, 575, 897
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	5 cut(s)	126, 253, 486, 571, 893
FblI	GTMKAC	2 cut(s)	415, 732
Fnu4HI	GCNGC	5 cut(s)	50, 65, 187, 214, 250
FokI	GGATG	1 cut(s)	547
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	5 cut(s)	50, 65, 187, 214, 250
FspAI	RTGCGCAY	1 cut(s)	898
FspBI	CTAG	4 cut(s)	93, 333, 674, 904
FspI	TGCGCA	1 cut(s)	898
GlaI	GCGC	2 cut(s)	39, 898
GluI	GCNGC	5 cut(s)	50, 65, 187, 214, 250
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	2 cut(s)	735, 844
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	7 cut(s)	67, 143, 186, 200, 252, 268, 327
HapII	CCGG	7 cut(s)	140, 196, 222, 241, 269, 624, 664
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	2 cut(s)	40, 899
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	5 cut(s)	130, 257, 490, 575, 897
Hin6I	GCGC	2 cut(s)	38, 897
HinP1I	GCGC	2 cut(s)	38, 897
HincII	GTYRAC	3 cut(s)	592, 733, 853
HindII	GTYRAC	3 cut(s)	592, 733, 853
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	4 cut(s)	17, 98, 397, 854
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	7 cut(s)	140, 196, 222, 241, 269, 624, 664
HphI	GGTGA	3 cut(s)	164, 523, 820
Hpy166II	GTNNAC	8 cut(s)	73, 416, 497, 544, 592, 679, 733, 853
Hpy188I	TCNGA	6 cut(s)	16, 22, 345, 484, 583, 607
Hpy188III	TCNNGA	4 cut(s)	28, 93, 333, 783
Hpy8I	GTNNAC	8 cut(s)	73, 416, 497, 544, 592, 679, 733, 853
Hpy99I	CGWCG	4 cut(s)	26, 46, 49, 737
HpyAV	CCTTC	7 cut(s)	154, 186, 287, 316, 330, 470, 688
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	3 cut(s)	24, 557, 831
HpyCH4V	TGCA	6 cut(s)	4, 130, 276, 457, 587, 620
HpyF10VI	GCNNNNNNNGC	9 cut(s)	46, 55, 64, 140, 206, 222, 246, 725, 826
HpyF3I	CTNAG	3 cut(s)	34, 448, 724
HpySE526I	ACGT	3 cut(s)	24, 557, 831
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	5 cut(s)	130, 257, 490, 575, 897
HspAI	GCGC	2 cut(s)	38, 897
KpnI	GGTACC	1 cut(s)	701
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	53, 479
LmnI	GCTCC	4 cut(s)	237, 584, 716, 845
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	4 cut(s)	93, 333, 674, 904
MaeII	ACGT	3 cut(s)	24, 557, 831
MaeIII	GTNAC	4 cut(s)	25, 511, 659, 780
MalI	GATC	2 cut(s)	55, 481
MboI	GATC	2 cut(s)	53, 479
MboII	GAAGA	2 cut(s)	302, 646
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	4 cut(s)	460, 520, 609, 835
MlyI	GAGTC	2 cut(s)	92, 848
MmeI	TCCRAC	2 cut(s)	45, 126
MseI	TTAA	4 cut(s)	231, 441, 591, 881
MspI	CCGG	7 cut(s)	140, 196, 222, 241, 269, 624, 664
MspR9I	CCNGG	2 cut(s)	196, 197
Mva1269I	GAATGC	1 cut(s)	278
MvnI	CGCG	3 cut(s)	52, 216, 249
MwoI	GCNNNNNNNGC	9 cut(s)	46, 55, 64, 140, 206, 222, 246, 725, 826
NciI	CCSGG	2 cut(s)	196, 197
NdeII	GATC	2 cut(s)	53, 479
NlaIII	CATG	5 cut(s)	130, 257, 490, 575, 897
NlaIV	GGNNCC	2 cut(s)	239, 699
NmuCI	GTSAC	3 cut(s)	25, 511, 780
NsbI	TGCGCA	1 cut(s)	898
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	17, 397
PinAI	ACCGGT	1 cut(s)	623
PkrI	GCNGC	5 cut(s)	51, 66, 188, 215, 251
Ple19I	CGATCG	1 cut(s)	56
PleI	GAGTC	2 cut(s)	92, 848
PpsI	GAGTC	2 cut(s)	92, 848
Ppu21I	YACGTR	1 cut(s)	832
PspFI	CCCAGC	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	239, 699
PspPI	GGNCC	2 cut(s)	198, 325
PvuI	CGATCG	1 cut(s)	56
RgaI	GCGATCGC	1 cut(s)	56
RsaI	GTAC	4 cut(s)	74, 498, 545, 699
RsaNI	GTAC	4 cut(s)	73, 497, 544, 698
SalI	GTCGAC	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	231, 441, 591, 881
SatI	GCNGC	5 cut(s)	50, 65, 187, 214, 250
Sau3AI	GATC	2 cut(s)	53, 479
Sau96I	GGNCC	2 cut(s)	198, 325
SchI	GAGTC	2 cut(s)	92, 848
ScrFI	CCNGG	2 cut(s)	196, 197
SduI	GDGCHC	1 cut(s)	312
SfaAI	GCGATCGC	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	574
SgfI	GCGATCGC	1 cut(s)	56
SmaI	CCCGGG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	460, 520, 609, 835
SsiI	CCGC	6 cut(s)	50, 64, 187, 207, 214, 249
SspMI	CTAG	4 cut(s)	93, 333, 674, 904
StyD4I	CCNGG	2 cut(s)	194, 195
StyI	CCWWGG	2 cut(s)	685, 843
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	3 cut(s)	27, 560, 834
TaqI	TCGA	1 cut(s)	732
TaqII	GACCGA	1 cut(s)	768
TasI	AATT	4 cut(s)	460, 520, 609, 835
TatI	WGTACW	2 cut(s)	72, 543
TauI	GCSGC	5 cut(s)	52, 67, 189, 216, 252
TfiI	GAWTC	2 cut(s)	17, 397
Tru1I	TTAA	4 cut(s)	231, 441, 591, 881
Tru9I	TTAA	4 cut(s)	231, 441, 591, 881
TscAI	CASTG	3 cut(s)	75, 534, 827
TseFI	GTSAC	3 cut(s)	25, 511, 780
Tsp45I	GTSAC	3 cut(s)	25, 511, 780
TspDTI	ATGAA	4 cut(s)	358, 533, 560, 882
TspMI	CCCGGG	1 cut(s)	195
TspRI	CASTG	3 cut(s)	75, 534, 827
XbaI	TCTAGA	2 cut(s)	92, 332
XmaI	CCCGGG	1 cut(s)	195
XmiI	GTMKAC	2 cut(s)	415, 732
XspI	CTAG	4 cut(s)	93, 333, 674, 904
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.