RLG00000016086

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002766
Physical Location & Seq
Forward (+)
3793453 .. 3794821
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016086

Sequence Viewer

Length: 912 bp
ATGATGCACGCCAAGTCCGATTCCGACGTCACGAGCTTGGCACCGTCGTCGCCGCGATCGCCGAAGCGGCCAGTGTACTATGTCCAGAGCCCATCTAGGGATTCAAACGATGGCGACAAGTCCTCCACCATGCACGCCACGCCGGCCTTCAACAGCCCAACGGAAAGCCCATCTCACCCTTCCTACGGCCGCCACTCGCGGGCCTCCTCCGCCAGCCGGGTCTCCGGTAACTTTAAAGGTTCCCGGAAACGCAGCAACGATAAAGGTTGGCCTGAAAGCAAAGTGATCGAAGAAGAAGGGGACTACAATGGGCTTTATGAGGAGAAGGGCATTTCTAGAAGGTGCCAGATTTTGATGGCTTTGTTTGGGTTTATTGTCATCTTTTCGATTTTCTGCTTGATTCTTTGGGGTGCTAGTAGACCTTACAAAGCTCGGGTTGCTGTTAAGAGCTTAGCTGTTCATAACTTTTATTTCGGGGAAGGATCGGACATAACTGGTGTGCCTACGAAGATGTTGACGATGAATTGTTCAATGAGGATGAGTGTGTACAACCCTGCTACGTTTTTCGGTATTCATGTCAGCTCCACCACAATTAGCCTTATGTATTCAGATATTGCTGTTGCAACTGGTCAGTTAAAGAATTACTATCAACCAAGAAAGAGCCACCGGAATGTGGCTGTGAACCTCCAAGGAGTGAAGGTGCCTTTATATGGGGCTGGGGCAAGCTTAGCAGTCGACGATACCAATGGAGGAGTTCCGATGACACTTGTGTTTGAGGTTCGGTCACGAGGGAATGTGGTGGGGAAGTTGGTGAGAACAAGGCACCGGAGGCGCGTATCTTGCTCCATGGATGTAGACTCTCATAAAACCAAACCCATCACATTAAAAGCGAGTTCATGTACGTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

304

Amino Acids

33.36

Weight (kDa)

9.86

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 180 - 282 8.8e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccB1I GGYRCC 4 cut(s) 40, 342, 700, 822
AccI GTMKAC 3 cut(s) 418, 735, 855
AccII CGCG 3 cut(s) 55, 199, 834
AciI CCGC 5 cut(s) 53, 67, 190, 199, 210
AclWI GGATC 1 cut(s) 490
AcoI YGGCCR 2 cut(s) 68, 187
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 4 cut(s) 77, 548, 901, 905
AfiI CCNNNNNNNGG 6 cut(s) 97, 185, 199, 216, 673, 710
AgsI TTSAA 3 cut(s) 105, 151, 531
AluBI AGCT 6 cut(s) 36, 431, 450, 455, 582, 726
AluI AGCT 6 cut(s) 36, 431, 450, 455, 582, 726
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 490
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 5 cut(s) 68, 144, 187, 201, 269
ApeKI GCWGC 1 cut(s) 252
AsiSI GCGATCGC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 2 cut(s) 218, 244
AsuHPI GGTGA 2 cut(s) 167, 823
AvaI CYCGRG 1 cut(s) 432
BanI GGYRCC 4 cut(s) 40, 342, 700, 822
BanII GRGCYC 1 cut(s) 92
BauI CACGAG 2 cut(s) 31, 786
BbvI GCAGC 1 cut(s) 264
BccI CCATC 5 cut(s) 100, 104, 178, 349, 884
BceAI ACGGC 1 cut(s) 202
BcgI CGANNNNNNTGC 4 cut(s) 30, 64, 268, 302
BcnI CCSGG 2 cut(s) 218, 244
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 3 cut(s) 96, 336, 414
BglI GCCNNNNNGGC 2 cut(s) 67, 143
BisI GCNGC 4 cut(s) 53, 68, 190, 253
BlpI GCTNAGC 2 cut(s) 451, 727
BlsI GCNGC 4 cut(s) 54, 69, 191, 254
Bme1390I CCNGG 2 cut(s) 218, 244
BmeT110I CYCGRG 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 5 cut(s) 42, 241, 344, 702, 824
BmrFI CCNGG 2 cut(s) 218, 244
Bpu1102I GCTNAGC 2 cut(s) 451, 727
BpuMI CCSGG 2 cut(s) 218, 244
BsaAI YACGTR 1 cut(s) 903
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 688, 846
BsaWI WCCGGW 3 cut(s) 224, 666, 825
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 684, 714
Bsc4I CCNNNNNNNGG 6 cut(s) 97, 185, 199, 216, 673, 710
Bse118I RCCGGY 1 cut(s) 142
Bse1I ACTGG 3 cut(s) 71, 499, 631
BseDI CCNNGG 2 cut(s) 688, 846
BseGI GGATG 2 cut(s) 543, 856
BseLI CCNNNNNNNGG 6 cut(s) 97, 185, 199, 216, 673, 710
BseNI ACTGG 3 cut(s) 71, 499, 631
BseRI GAGGAG 3 cut(s) 196, 335, 765
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 264
BseYI CCCAGC 1 cut(s) 716
Bsh1236I CGCG 3 cut(s) 55, 199, 834
Bsh1285I CGRYCG 2 cut(s) 59, 190
BshFI GGCC 5 cut(s) 70, 146, 189, 203, 271
BshNI GGYRCC 4 cut(s) 40, 342, 700, 822
BsiEI CGRYCG 2 cut(s) 59, 190
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 6 cut(s) 143, 217, 225, 244, 667, 826
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 6 cut(s) 97, 185, 199, 216, 673, 710
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 5 cut(s) 70, 146, 189, 203, 271
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 92
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 3 cut(s) 56, 285, 482
Bsp1720I GCTNAGC 2 cut(s) 451, 727
Bsp19I CCATGG 1 cut(s) 846
BspACI CCGC 5 cut(s) 53, 67, 190, 199, 210
BspANI GGCC 5 cut(s) 70, 146, 189, 203, 271
BspFNI CGCG 3 cut(s) 55, 199, 834
BspLI GGNNCC 5 cut(s) 42, 241, 344, 702, 824
BspPI GGATC 1 cut(s) 490
BspT107I GGYRCC 4 cut(s) 40, 342, 700, 822
BspTNI GGTCTC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 142
BsrGI TGTACA 1 cut(s) 546
BsrI ACTGG 3 cut(s) 71, 499, 631
BssAI RCCGGY 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 688, 846
BssMI GATC 3 cut(s) 56, 285, 482
BssNI GRCGYC 1 cut(s) 27
BssSI CACGAG 2 cut(s) 31, 786
BssT1I CCWWGG 2 cut(s) 688, 846
Bst2BI CACGAG 2 cut(s) 31, 786
Bst4CI ACNGT 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 903
BstC8I GCNNGC 6 cut(s) 9, 135, 144, 201, 214, 724
BstDEI CTNAG 2 cut(s) 451, 727
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 2 cut(s) 543, 856
BstFNI CGCG 3 cut(s) 55, 199, 834
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 3 cut(s) 59, 288, 485
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 56, 285, 482
BstMCI CGRYCG 2 cut(s) 59, 190
BstMWI GCNNNNNNNGC 9 cut(s) 58, 67, 139, 143, 209, 437, 728, 829, 840
BstSCI CCNGG 2 cut(s) 216, 242
BstSNI TACGTA 1 cut(s) 903
BstUI CGCG 3 cut(s) 55, 199, 834
BstV1I GCAGC 1 cut(s) 264
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 5 cut(s) 70, 146, 189, 203, 271
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 2 cut(s) 543, 856
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 6 cut(s) 9, 135, 144, 201, 214, 724
CfoI GCGC 1 cut(s) 834
Cfr10I RCCGGY 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 4 cut(s) 76, 547, 900, 904
CviAII CATG 4 cut(s) 130, 575, 847, 897
CviQI GTAC 4 cut(s) 76, 547, 900, 904
DdeI CTNAG 2 cut(s) 451, 727
DpnI GATC 3 cut(s) 58, 287, 484
DpnII GATC 3 cut(s) 56, 285, 482
DraI TTTAAA 1 cut(s) 235
EaeI YGGCCR 2 cut(s) 68, 187
EagI CGGCCG 1 cut(s) 187
EciI GGCGGA 1 cut(s) 199
EclXI CGGCCG 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 903
Eco130I CCWWGG 2 cut(s) 688, 846
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 226
Eco52I CGGCCG 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 688, 846
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 2 cut(s) 688, 846
FaeI CATG 4 cut(s) 133, 578, 850, 900
FaqI GGGAC 1 cut(s) 314
FatI CATG 4 cut(s) 129, 574, 846, 896
FauI CCCGC 1 cut(s) 192
FblI GTMKAC 3 cut(s) 418, 735, 855
Fnu4HI GCNGC 4 cut(s) 53, 68, 190, 253
FokI GGATG 2 cut(s) 550, 863
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 53, 68, 190, 253
FspBI CTAG 3 cut(s) 96, 336, 414
GlaI GCGC 1 cut(s) 833
GluI GCNGC 4 cut(s) 53, 68, 190, 253
GsaI CCCAGC 1 cut(s) 720
HaeIII GGCC 5 cut(s) 70, 146, 189, 203, 271
HapII CCGG 6 cut(s) 143, 217, 225, 244, 667, 826
HhaI GCGC 1 cut(s) 834
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 4 cut(s) 133, 578, 850, 900
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HincII GTYRAC 2 cut(s) 516, 736
HindII GTYRAC 2 cut(s) 516, 736
HindIII AAGCTT 1 cut(s) 724
HinfI GANTC 4 cut(s) 20, 101, 400, 857
HpaII CCGG 6 cut(s) 143, 217, 225, 244, 667, 826
HphI GGTGA 2 cut(s) 167, 823
Hpy166II GTNNAC 7 cut(s) 76, 419, 516, 547, 682, 736, 856
Hpy188I TCNGA 5 cut(s) 19, 25, 487, 610, 759
Hpy188III TCNNGA 4 cut(s) 31, 85, 336, 786
Hpy8I GTNNAC 7 cut(s) 76, 419, 516, 547, 682, 736, 856
Hpy99I CGWCG 4 cut(s) 29, 49, 52, 740
HpyAV CCTTC 7 cut(s) 157, 189, 290, 319, 333, 473, 691
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 3 cut(s) 27, 560, 902
HpyCH4V TGCA 3 cut(s) 7, 133, 623
HpyF10VI GCNNNNNNNGC 9 cut(s) 58, 67, 139, 143, 209, 437, 728, 829, 840
HpyF3I CTNAG 2 cut(s) 451, 727
HpySE526I ACGT 3 cut(s) 27, 560, 902
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 4 cut(s) 133, 578, 850, 900
HspAI GCGC 1 cut(s) 832
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 3 cut(s) 56, 285, 482
LmnI GCTCC 2 cut(s) 587, 848
Lsp1109I GCAGC 1 cut(s) 264
MaeI CTAG 3 cut(s) 96, 336, 414
MaeII ACGT 3 cut(s) 27, 560, 902
MaeIII GTNAC 3 cut(s) 28, 227, 783
MalI GATC 3 cut(s) 58, 287, 484
MboI GATC 3 cut(s) 56, 285, 482
MboII GAAGA 3 cut(s) 302, 305, 520
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 3 cut(s) 523, 591, 640
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 48
MroNI GCCGGC 1 cut(s) 142
MseI TTAA 4 cut(s) 234, 444, 635, 884
MslI CAYNNNNRTG 1 cut(s) 669
MspI CCGG 6 cut(s) 143, 217, 225, 244, 667, 826
MspR9I CCNGG 2 cut(s) 218, 244
MvnI CGCG 3 cut(s) 55, 199, 834
MwoI GCNNNNNNNGC 9 cut(s) 58, 67, 139, 143, 209, 437, 728, 829, 840
NaeI GCCGGC 1 cut(s) 144
NciI CCSGG 2 cut(s) 218, 244
NcoI CCATGG 1 cut(s) 846
NdeII GATC 3 cut(s) 56, 285, 482
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 4 cut(s) 133, 578, 850, 900
NlaIV GGNNCC 5 cut(s) 42, 241, 344, 702, 824
NmuCI GTSAC 2 cut(s) 28, 783
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 20, 101, 400
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 4 cut(s) 54, 69, 191, 254
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 903
PspFI CCCAGC 1 cut(s) 716
PspN4I GGNNCC 5 cut(s) 42, 241, 344, 702, 824
PspPI GGNCC 1 cut(s) 201
PvuI CGATCG 1 cut(s) 59
RgaI GCGATCGC 1 cut(s) 59
RsaI GTAC 4 cut(s) 77, 548, 901, 905
RsaNI GTAC 4 cut(s) 76, 547, 900, 904
RseI CAYNNNNRTG 1 cut(s) 669
SalI GTCGAC 1 cut(s) 734
SaqAI TTAA 4 cut(s) 234, 444, 635, 884
SatI GCNGC 4 cut(s) 53, 68, 190, 253
Sau3AI GATC 3 cut(s) 56, 285, 482
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 2 cut(s) 218, 244
SduI GDGCHC 1 cut(s) 92
SfaAI GCGATCGC 1 cut(s) 59
SgfI GCGATCGC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 669
SnaBI TACGTA 1 cut(s) 903
Sse9I AATT 3 cut(s) 523, 591, 640
SsiI CCGC 5 cut(s) 53, 67, 190, 199, 210
SspMI CTAG 3 cut(s) 96, 336, 414
StyD4I CCNGG 2 cut(s) 216, 242
StyI CCWWGG 2 cut(s) 688, 846
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 3 cut(s) 30, 563, 905
TaqI TCGA 3 cut(s) 288, 386, 735
TaqII GACCGA 1 cut(s) 771
TasI AATT 3 cut(s) 523, 591, 640
TatI WGTACW 2 cut(s) 75, 546
TauI GCSGC 3 cut(s) 55, 70, 192
TfiI GAWTC 3 cut(s) 20, 101, 400
Tru1I TTAA 4 cut(s) 234, 444, 635, 884
Tru9I TTAA 4 cut(s) 234, 444, 635, 884
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 2 cut(s) 28, 783
TseI GCWGC 1 cut(s) 252
Tsp45I GTSAC 2 cut(s) 28, 783
TspDTI ATGAA 4 cut(s) 449, 536, 563, 885
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 335
XmiI GTMKAC 3 cut(s) 418, 735, 855
XspI CTAG 3 cut(s) 96, 336, 414
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.