Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Reverse (-)

4898847 .. 4901338

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATGCATTCAACAAAATCTGAGTCTGATGTCACAAGCTTGGCTCCATCATCACCATCAAGGTCCCCAAAGGTACCTGTATACTATGTGCAGAGCCCTTCTAGGGACTCTCATGATGGAGACAAGTCCTCATCAATGCAGGCCACTCCAATCTACAACAACAGTCCCATGGAGTCACCCTCACACCCCTCCTTTGGTCGTCACTCAAGGAACTCCTCTGCGAGTAGATTCTCGGGGATTTTCAGGTCCTCTTCGGGTAGAAAAGGCGGTAGGAAGCCGAGGAATGACAAGGGGTGGCCAGAGTGTAAGGTGATAATGGAAGAAGGGGCTTATGATGATTTTGATAAGGGGCTCTCGCGGCGTGTGCAGGTCTGCATTGCTCTCCTTAGCTTTGTGATGTTGTTCACTATCTTCTGCTTGATCATATGGGGTGCAAGCAGGCCTTACAATGCAACGGTTGTAGTCAAGAGCTTGGAAATTAGTAACTTCTATATTGGTGAGGGTTCAGATTCCAGTGGGGTTCCAACAAAGATGTTGACAGTGAATGGCTCATTAAGATTGAGTGTGCACAACTCTGCTTCAATGTTTGGAATTCATGTTAGCTCCGCACCTATCATTCTCGCCTACTCAGAGATTTCTGTGGCAACTGGCCAGTTGAAGAAATATTATCAGCCAAGAAAGAGTCTCCGAACGGTATCAGTGAACTTGCAAGGAACTAAGGTTCCTCTATACGGGGCTGCATCAAGTTTGACATACACAAAGACTGGCGGGTTGGTTCCAATTCCATTGACCTTAAAGTTAGAAATCCGGTCTCGAGCATTTGTGGTAGGGAAGCTAGTGAAAACAAAGCATCGAAGGCGAATCTCGTGCCCTTTGGTTCTGGATCCCACTTTTACCAAACCCATCAAGTTCAAGAAGAGTTCATGCACTTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

LEA_2

Protein Analysis

313

Amino Acids

34.26

Weight (kDa)

9.99

Isoelectric Point (pI)

60.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
Acc65I	GGTACC	1 cut(s)	73
AccB1I	GGYRCC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	358
AciI	CCGC	4 cut(s)	267, 358, 606, 768
AclWI	GGATC	2 cut(s)	878, 891
AcoI	YGGCCR	2 cut(s)	296, 649
AcsI	RAATTY	1 cut(s)	591
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	103, 194, 731
AgsI	TTSAA	4 cut(s)	12, 582, 658, 913
AloI	GAACNNNNNNTCC	4 cut(s)	705, 706, 737, 738
AluBI	AGCT	5 cut(s)	39, 390, 471, 603, 835
AluI	AGCT	5 cut(s)	39, 390, 471, 603, 835
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	3 cut(s)	114, 689, 816
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	878, 891
Ama87I	CYCGRG	2 cut(s)	232, 813
AoxI	GGCC	4 cut(s)	141, 296, 440, 649
ApaLI	GTGCAC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	1 cut(s)	591
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
Asp718I	GGTACC	1 cut(s)	73
AspS9I	GGNCC	2 cut(s)	63, 246
AsuHPI	GGTGA	4 cut(s)	45, 168, 322, 509
AvaI	CYCGRG	2 cut(s)	232, 813
AvaII	GGWCC	2 cut(s)	63, 246
BaeGI	GKGCMC	2 cut(s)	570, 872
BalI	TGGCCA	2 cut(s)	298, 651
BamHI	GGATCC	1 cut(s)	883
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	98, 354
BauI	CACGAG	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	4 cut(s)	55, 64, 110, 911
BcgI	CGANNNNNNTGC	2 cut(s)	849, 883
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	114, 689, 816
BfaI	CTAG	2 cut(s)	102, 836
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	2 cut(s)	359, 738
BlsI	GCNGC	2 cut(s)	360, 739
Bme18I	GGWCC	2 cut(s)	63, 246
BmeT110I	CYCGRG	2 cut(s)	232, 813
BmgT120I	GGNCC	2 cut(s)	63, 246
BmiI	GGNNCC	7 cut(s)	45, 65, 75, 522, 723, 777, 885
BmsI	GCATC	2 cut(s)	749, 859
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu10I	CCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	816
BsaJI	CCNNGG	2 cut(s)	168, 278
BsaWI	WCCGGW	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 194, 731
Bse1I	ACTGG	4 cut(s)	513, 652, 652, 769
Bse3DI	GCAATG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	168, 278
BseLI	CCNNNNNNNGG	3 cut(s)	103, 194, 731
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	12, 642
BseNI	ACTGG	4 cut(s)	513, 652, 652, 769
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	2 cut(s)	570, 872
BseXI	GCAGC	1 cut(s)	724
BsgI	GTGCAG	2 cut(s)	110, 386
Bsh1236I	CGCG	1 cut(s)	358
BshFI	GGCC	4 cut(s)	143, 298, 442, 651
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	570
BsiHKCI	CYCGRG	2 cut(s)	232, 813
BsiSI	CCGG	1 cut(s)	808
BslFI	GGGAC	3 cut(s)	49, 119, 150
BslI	CCNNNNNNNGG	3 cut(s)	103, 194, 731
BsmAI	GTCTC	3 cut(s)	114, 689, 816
BsmFI	GGGAC	3 cut(s)	49, 119, 150
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	4 cut(s)	143, 298, 442, 651
Bso31I	GGTCTC	1 cut(s)	816
BsoBI	CYCGRG	2 cut(s)	232, 813
Bsp1286I	GDGCHC	4 cut(s)	98, 354, 570, 872
Bsp143I	GATC	2 cut(s)	420, 883
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	4 cut(s)	267, 358, 606, 768
BspANI	GGCC	4 cut(s)	143, 298, 442, 651
BspCNI	CTCAG	2 cut(s)	13, 641
BspFNI	CGCG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	7 cut(s)	45, 65, 75, 522, 723, 777, 885
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	2 cut(s)	878, 891
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	816
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	4 cut(s)	513, 652, 652, 769
BssECI	CCNNGG	2 cut(s)	168, 278
BssMI	GATC	2 cut(s)	420, 883
BssNAI	GTATAC	1 cut(s)	82
BssSI	CACGAG	1 cut(s)	865
BssT1I	CCWWGG	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	865
Bst4CI	ACNGT	4 cut(s)	164, 457, 541, 694
Bst6I	CTCTTC	2 cut(s)	256, 911
BstC8I	GCNNGC	3 cut(s)	141, 436, 440
BstDEI	CTNAG	4 cut(s)	21, 386, 628, 717
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	423, 886
BstMAI	GTCTC	3 cut(s)	114, 689, 816
BstMBI	GATC	2 cut(s)	420, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	358, 364, 856
BstSLI	GKGCMC	2 cut(s)	570, 872
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	724
BstX2I	RGATCY	1 cut(s)	883
BstYI	RGATCY	1 cut(s)	883
BstZ17I	GTATAC	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	143, 298, 442, 651
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	520, 546, 705
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	3 cut(s)	141, 436, 440
CciI	TCATGA	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	63, 246
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	4 cut(s)	113, 169, 596, 924
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	4 cut(s)	21, 386, 628, 717
DpnI	GATC	2 cut(s)	422, 885
DpnII	GATC	2 cut(s)	420, 883
EaeI	YGGCCR	2 cut(s)	296, 649
Eam1104I	CTCTTC	2 cut(s)	256, 911
EarI	CTCTTC	2 cut(s)	256, 911
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	98, 354
Eco31I	GGTCTC	1 cut(s)	816
Eco47I	GGWCC	2 cut(s)	63, 246
Eco88I	CYCGRG	2 cut(s)	232, 813
EcoO109I	RGGNCCY	2 cut(s)	63, 246
EcoRI	GAATTC	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	98, 354
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	4 cut(s)	116, 172, 599, 927
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	3 cut(s)	49, 119, 150
FatI	CATG	4 cut(s)	112, 168, 595, 923
FauI	CCCGC	1 cut(s)	761
FauNDI	CATATG	1 cut(s)	425
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	359, 738
FriOI	GRGCYC	2 cut(s)	98, 354
Fsp4HI	GCNGC	2 cut(s)	359, 738
FspBI	CTAG	2 cut(s)	102, 836
GluI	GCNGC	2 cut(s)	359, 738
HaeIII	GGCC	4 cut(s)	143, 298, 442, 651
HapII	CCGG	1 cut(s)	808
Hin1II	CATG	4 cut(s)	116, 172, 599, 927
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	7 cut(s)	23, 107, 173, 228, 509, 682, 861
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	4 cut(s)	45, 168, 322, 509
Hpy166II	GTNNAC	5 cut(s)	82, 405, 537, 568, 703
Hpy188I	TCNGA	5 cut(s)	22, 28, 508, 631, 689
Hpy188III	TCNNGA	5 cut(s)	113, 466, 813, 881, 913
Hpy8I	GTNNAC	5 cut(s)	82, 405, 537, 568, 703
HpyAV	CCTTC	3 cut(s)	108, 317, 849
HpyCH4III	ACNGT	4 cut(s)	164, 457, 541, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	358, 364, 856
HpyF3I	CTNAG	4 cut(s)	21, 386, 628, 717
Hsp92II	CATG	4 cut(s)	116, 172, 599, 927
KpnI	GGTACC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	420, 883
LmnI	GCTCC	2 cut(s)	49, 608
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	2 cut(s)	749, 859
MaeI	CTAG	2 cut(s)	102, 836
MaeIII	GTNAC	4 cut(s)	31, 174, 200, 482
MalI	GATC	2 cut(s)	422, 885
MboI	GATC	2 cut(s)	420, 883
MboII	GAAGA	5 cut(s)	243, 332, 403, 670, 928
MflI	RGATCY	1 cut(s)	883
MhlI	GDGCHC	4 cut(s)	98, 354, 570, 872
MlsI	TGGCCA	2 cut(s)	298, 651
MluCI	AATT	3 cut(s)	477, 591, 780
MluNI	TGGCCA	2 cut(s)	298, 651
MlyI	GAGTC	4 cut(s)	32, 101, 182, 691
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	8 cut(s)	139, 190, 199, 226, 259, 273, 493, 735
Mox20I	TGGCCA	2 cut(s)	298, 651
Mph1103I	ATGCAT	1 cut(s)	9
MscI	TGGCCA	2 cut(s)	298, 651
MseI	TTAA	2 cut(s)	554, 794
Msp20I	TGGCCA	2 cut(s)	298, 651
MspI	CCGG	1 cut(s)	808
Mva1269I	GAATGC	1 cut(s)	7
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	358, 364, 856
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	2 cut(s)	420, 883
NlaIII	CATG	4 cut(s)	116, 172, 599, 927
NlaIV	GGNNCC	7 cut(s)	45, 65, 75, 522, 723, 777, 885
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	3 cut(s)	31, 174, 200
NsiI	ATGCAT	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	813
PagI	TCATGA	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	442
PctI	GAATGC	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	228, 509, 861
PkrI	GCNGC	2 cut(s)	360, 739
PleI	GAGTC	4 cut(s)	31, 101, 181, 690
PpsI	GAGTC	4 cut(s)	31, 101, 181, 690
PpuMI	RGGWCCY	2 cut(s)	63, 246
Psp5II	RGGWCCY	2 cut(s)	63, 246
PspN4I	GGNNCC	7 cut(s)	45, 65, 75, 522, 723, 777, 885
PspPI	GGNCC	2 cut(s)	63, 246
PspPPI	RGGWCCY	2 cut(s)	63, 246
PsuI	RGATCY	1 cut(s)	883
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	554, 794
SatI	GCNGC	2 cut(s)	359, 738
Sau3AI	GATC	2 cut(s)	420, 883
Sau96I	GGNCC	2 cut(s)	63, 246
SchI	GAGTC	4 cut(s)	32, 101, 182, 691
SduI	GDGCHC	4 cut(s)	98, 354, 570, 872
SfaNI	GCATC	2 cut(s)	749, 859
Sfr274I	CTCGAG	1 cut(s)	813
SinI	GGWCC	2 cut(s)	63, 246
SlaI	CTCGAG	1 cut(s)	813
SmlI	CTYRAG	2 cut(s)	205, 813
SmoI	CTYRAG	2 cut(s)	205, 813
Sse9I	AATT	3 cut(s)	477, 591, 780
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	267, 358, 606, 768
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	2 cut(s)	102, 836
StuI	AGGCCT	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	164, 457, 541, 694
TaqI	TCGA	2 cut(s)	814, 853
TasI	AATT	3 cut(s)	477, 591, 780
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	228, 509, 861
Tru1I	TTAA	2 cut(s)	554, 794
Tru9I	TTAA	2 cut(s)	554, 794
TscAI	CASTG	3 cut(s)	520, 546, 705
TseFI	GTSAC	3 cut(s)	31, 174, 200
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	3 cut(s)	31, 174, 200
TspDTI	ATGAA	2 cut(s)	584, 912
TspRI	CASTG	3 cut(s)	520, 546, 705
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	63, 246
XapI	RAATTY	1 cut(s)	591
XhoI	CTCGAG	1 cut(s)	813
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	102, 836
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.