Rroxscaffold_2G00151390

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002766
Physical Location & Seq
Reverse (-)
88642127 .. 88644417
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151390.1

Sequence Viewer

Length: 1002 bp
ATGCACGCCAAGTCCGATTCCGACGTCACGAGCTTAGCACCGTCGTCGCCGCGATCGCCGAAGCGGCCAGTGTACTATGTCCAGAGCCCATCTAGGGATTCAAACGATGGCGACAAGTCCTCCACCATGCACGCCACGCCGGCCTTCAACAGCCCAACGGAAAGCCCATCTCACCCTTCCTACGGCCGCCACTCGCGGGCCTCCTCCGCCAGCCGGGTCTCCGGTACCTTTAAAGGTTCCCGGAAACGCGGCAACGATAAAGGTTGGCCTGAATGCAAAGTGATCGAAGAAGAAGGGGACTACAATGGGCTTTATGAGGAGAAGGGCATTTCTAGAAGGTGCCAGATTTTGATGGCTTTGTTTGGGTTTATTGTCATCTTTTCGATTTTCTGCTTGATTCTTTGGGGTGCTAGTAGACCTTACAAAGCTCGGGTTGCTGTTAAGAACTTTCTAAGTTTGGCATTTGGCATAGTATTCAAAGTATCTTTTTGCACTAGTATTCATGTTCATGTTTATGGAGCGGTCGTTTTCTTTCAGAGCTTAGCCGTTCATAACTTTTATTTCGGGGAAGGATCGGACATAACTGGTGTGCCTACGAAGATGTTGACGATGAATTGTTCAATGAGGATGAGTGTGTACAACCCTGCTACGTTTTTCGGTATTCATGTCAGCTCCACCACAATTAGCCTTATGTATTCAGATATTGCTGTTGCAACTGGTCAGTTAAAGAATTACTATCAACCAAGAAAGAGCCACCGGAATGTGGCTGTGAACCTCCAAGGAGTGAAGGTGCCTTTATATGGGGCTGGGGCAAGCTTAGCAGTCGACGATACCAATGGAGGAGTTCCGATGACACTCGTGTTTGAGGTTCGGTCACGAGGGAATGTGGTGGGGAAGTTGGTGAGAACAAGGCACCGGAGGCGCGTATCTTGCTCCATGGATGTAGACTCTCATAAAACCAAACCCATCACATTAAAAGCGAGTTCATGTACGTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

333

Amino Acids

36.66

Weight (kDa)

9.78

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 210 - 312 1.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 4 cut(s) 224, 339, 790, 912
AccBSI CCGCTC 1 cut(s) 521
AccI GTMKAC 3 cut(s) 415, 825, 945
AccII CGCG 4 cut(s) 52, 196, 249, 924
AciI CCGC 7 cut(s) 50, 64, 187, 196, 207, 249, 521
AclWI GGATC 1 cut(s) 580
AcoI YGGCCR 2 cut(s) 65, 184
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 5 cut(s) 74, 226, 638, 991, 995
AfiI CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 763, 800
AgsI TTSAA 4 cut(s) 102, 148, 478, 621
AhlI ACTAGT 1 cut(s) 494
AluBI AGCT 5 cut(s) 33, 428, 540, 672, 816
AluI AGCT 5 cut(s) 33, 428, 540, 672, 816
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 580
Ama87I CYCGRG 1 cut(s) 429
AoxI GGCC 5 cut(s) 65, 141, 184, 198, 266
AsiSI GCGATCGC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 924
AspS9I GGNCC 1 cut(s) 198
AsuC2I CCSGG 2 cut(s) 215, 241
AsuHPI GGTGA 2 cut(s) 164, 913
AvaI CYCGRG 1 cut(s) 429
BanI GGYRCC 4 cut(s) 224, 339, 790, 912
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 3 cut(s) 28, 857, 876
BccI CCATC 5 cut(s) 97, 101, 175, 346, 974
BceAI ACGGC 2 cut(s) 199, 530
BcgI CGANNNNNNTGC 4 cut(s) 27, 61, 265, 299
BcnI CCSGG 2 cut(s) 215, 241
BcoDI GTCTC 1 cut(s) 223
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 4 cut(s) 93, 333, 411, 495
BglI GCCNNNNNGGC 2 cut(s) 64, 140
BisI GCNGC 4 cut(s) 50, 65, 187, 250
BlpI GCTNAGC 3 cut(s) 34, 541, 817
BlsI GCNGC 4 cut(s) 51, 66, 188, 251
Bme1390I CCNGG 2 cut(s) 215, 241
BmeT110I CYCGRG 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 5 cut(s) 226, 238, 341, 792, 914
BmrFI CCNGG 2 cut(s) 215, 241
Bpu1102I GCTNAGC 3 cut(s) 34, 541, 817
BpuMI CCSGG 2 cut(s) 215, 241
BsaAI YACGTR 1 cut(s) 993
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 778, 936
BsaWI WCCGGW 3 cut(s) 221, 756, 915
BsaXI ACNNNNNCTCC 6 cut(s) 104, 134, 510, 540, 774, 804
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 763, 800
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 68, 589, 721
BseDI CCNNGG 2 cut(s) 778, 936
BseGI GGATG 2 cut(s) 633, 946
BseLI CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 763, 800
BseNI ACTGG 3 cut(s) 68, 589, 721
BseRI GAGGAG 3 cut(s) 193, 332, 855
BseX3I CGGCCG 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 806
Bsh1236I CGCG 4 cut(s) 52, 196, 249, 924
Bsh1285I CGRYCG 3 cut(s) 56, 187, 525
BshFI GGCC 5 cut(s) 67, 143, 186, 200, 268
BshNI GGYRCC 4 cut(s) 224, 339, 790, 912
BsiEI CGRYCG 3 cut(s) 56, 187, 525
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 6 cut(s) 140, 214, 222, 241, 757, 916
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 763, 800
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 5 cut(s) 67, 143, 186, 200, 268
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 429
Bsp1286I GDGCHC 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 3 cut(s) 53, 282, 572
Bsp1720I GCTNAGC 3 cut(s) 34, 541, 817
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 7 cut(s) 50, 64, 187, 196, 207, 249, 521
BspANI GGCC 5 cut(s) 67, 143, 186, 200, 268
BspFNI CGCG 4 cut(s) 52, 196, 249, 924
BspLI GGNNCC 5 cut(s) 226, 238, 341, 792, 914
BspPI GGATC 1 cut(s) 580
BspT107I GGYRCC 4 cut(s) 224, 339, 790, 912
BspTNI GGTCTC 1 cut(s) 223
BsrBI CCGCTC 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 3 cut(s) 68, 589, 721
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 778, 936
BssMI GATC 3 cut(s) 53, 282, 572
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 3 cut(s) 28, 857, 876
BssT1I CCWWGG 2 cut(s) 778, 936
Bst2BI CACGAG 3 cut(s) 28, 857, 876
Bst4CI ACNGT 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 993
BstC8I GCNNGC 6 cut(s) 6, 132, 141, 198, 211, 814
BstDEI CTNAG 4 cut(s) 34, 452, 541, 817
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 2 cut(s) 633, 946
BstFNI CGCG 4 cut(s) 52, 196, 249, 924
BstHHI GCGC 1 cut(s) 924
BstKTI GATC 3 cut(s) 56, 285, 575
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 3 cut(s) 53, 282, 572
BstMCI CGRYCG 3 cut(s) 56, 187, 525
BstMWI GCNNNNNNNGC 9 cut(s) 55, 64, 136, 140, 206, 434, 818, 919, 930
BstSCI CCNGG 2 cut(s) 213, 239
BstSNI TACGTA 1 cut(s) 993
BstUI CGCG 4 cut(s) 52, 196, 249, 924
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 5 cut(s) 67, 143, 186, 200, 268
BtgI CCRYGG 1 cut(s) 936
BtsCI GGATG 2 cut(s) 633, 946
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 6 cut(s) 6, 132, 141, 198, 211, 814
CfoI GCGC 1 cut(s) 924
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 5 cut(s) 73, 225, 637, 990, 994
CviAII CATG 6 cut(s) 127, 503, 509, 665, 937, 987
CviQI GTAC 5 cut(s) 73, 225, 637, 990, 994
DdeI CTNAG 4 cut(s) 34, 452, 541, 817
DpnI GATC 3 cut(s) 55, 284, 574
DpnII GATC 3 cut(s) 53, 282, 572
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 65, 184
EagI CGGCCG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 196
EclXI CGGCCG 1 cut(s) 184
Eco105I TACGTA 1 cut(s) 993
Eco130I CCWWGG 2 cut(s) 778, 936
Eco24I GRGCYC 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 223
Eco52I CGGCCG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 429
EcoT14I CCWWGG 2 cut(s) 778, 936
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 2 cut(s) 778, 936
FaeI CATG 6 cut(s) 130, 506, 512, 668, 940, 990
FaqI GGGAC 1 cut(s) 311
FatI CATG 6 cut(s) 126, 502, 508, 664, 936, 986
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 3 cut(s) 415, 825, 945
Fnu4HI GCNGC 4 cut(s) 50, 65, 187, 250
FokI GGATG 2 cut(s) 640, 953
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 4 cut(s) 50, 65, 187, 250
FspBI CTAG 4 cut(s) 93, 333, 411, 495
GlaI GCGC 1 cut(s) 923
GluI GCNGC 4 cut(s) 50, 65, 187, 250
GsaI CCCAGC 1 cut(s) 810
HaeIII GGCC 5 cut(s) 67, 143, 186, 200, 268
HapII CCGG 6 cut(s) 140, 214, 222, 241, 757, 916
HhaI GCGC 1 cut(s) 924
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 6 cut(s) 130, 506, 512, 668, 940, 990
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HincII GTYRAC 2 cut(s) 606, 826
HindII GTYRAC 2 cut(s) 606, 826
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 4 cut(s) 17, 98, 397, 947
HpaII CCGG 6 cut(s) 140, 214, 222, 241, 757, 916
HphI GGTGA 2 cut(s) 164, 913
Hpy166II GTNNAC 7 cut(s) 73, 416, 606, 637, 772, 826, 946
Hpy188I TCNGA 6 cut(s) 16, 22, 537, 577, 700, 849
Hpy188III TCNNGA 4 cut(s) 28, 82, 333, 876
Hpy8I GTNNAC 7 cut(s) 73, 416, 606, 637, 772, 826, 946
Hpy99I CGWCG 4 cut(s) 26, 46, 49, 830
HpyAV CCTTC 7 cut(s) 154, 186, 287, 316, 330, 563, 781
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 3 cut(s) 24, 650, 992
HpyCH4V TGCA 5 cut(s) 4, 130, 276, 492, 713
HpyF10VI GCNNNNNNNGC 9 cut(s) 55, 64, 136, 140, 206, 434, 818, 919, 930
HpyF3I CTNAG 4 cut(s) 34, 452, 541, 817
HpySE526I ACGT 3 cut(s) 24, 650, 992
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 6 cut(s) 130, 506, 512, 668, 940, 990
HspAI GCGC 1 cut(s) 922
KpnI GGTACC 1 cut(s) 228
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Kzo9I GATC 3 cut(s) 53, 282, 572
LmnI GCTCC 3 cut(s) 518, 677, 938
MaeI CTAG 4 cut(s) 93, 333, 411, 495
MaeII ACGT 3 cut(s) 24, 650, 992
MaeIII GTNAC 2 cut(s) 25, 873
MalI GATC 3 cut(s) 55, 284, 574
MbiI CCGCTC 1 cut(s) 521
MboI GATC 3 cut(s) 53, 282, 572
MboII GAAGA 3 cut(s) 299, 302, 610
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 3 cut(s) 613, 681, 730
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 139
MseI TTAA 4 cut(s) 231, 441, 725, 974
MslI CAYNNNNRTG 3 cut(s) 507, 513, 759
MspI CCGG 6 cut(s) 140, 214, 222, 241, 757, 916
MspR9I CCNGG 2 cut(s) 215, 241
Mva1269I GAATGC 1 cut(s) 278
MvnI CGCG 4 cut(s) 52, 196, 249, 924
MwoI GCNNNNNNNGC 9 cut(s) 55, 64, 136, 140, 206, 434, 818, 919, 930
NaeI GCCGGC 1 cut(s) 141
NciI CCSGG 2 cut(s) 215, 241
NcoI CCATGG 1 cut(s) 936
NdeII GATC 3 cut(s) 53, 282, 572
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 6 cut(s) 130, 506, 512, 668, 940, 990
NlaIV GGNNCC 5 cut(s) 226, 238, 341, 792, 914
NmuCI GTSAC 2 cut(s) 25, 873
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 278
PdiI GCCGGC 1 cut(s) 141
PfeI GAWTC 3 cut(s) 17, 98, 397
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 4 cut(s) 51, 66, 188, 251
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 1 cut(s) 941
PpsI GAGTC 1 cut(s) 941
Ppu21I YACGTR 1 cut(s) 993
PspFI CCCAGC 1 cut(s) 806
PspN4I GGNNCC 5 cut(s) 226, 238, 341, 792, 914
PspPI GGNCC 1 cut(s) 198
PvuI CGATCG 1 cut(s) 56
RgaI GCGATCGC 1 cut(s) 56
RsaI GTAC 5 cut(s) 74, 226, 638, 991, 995
RsaNI GTAC 5 cut(s) 73, 225, 637, 990, 994
RseI CAYNNNNRTG 3 cut(s) 507, 513, 759
SalI GTCGAC 1 cut(s) 824
SaqAI TTAA 4 cut(s) 231, 441, 725, 974
SatI GCNGC 4 cut(s) 50, 65, 187, 250
Sau3AI GATC 3 cut(s) 53, 282, 572
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 2 cut(s) 215, 241
SduI GDGCHC 1 cut(s) 89
SfaAI GCGATCGC 1 cut(s) 56
SgfI GCGATCGC 1 cut(s) 56
SmiMI CAYNNNNRTG 3 cut(s) 507, 513, 759
SnaBI TACGTA 1 cut(s) 993
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 3 cut(s) 613, 681, 730
SsiI CCGC 7 cut(s) 50, 64, 187, 196, 207, 249, 521
SspMI CTAG 4 cut(s) 93, 333, 411, 495
StyD4I CCNGG 2 cut(s) 213, 239
StyI CCWWGG 2 cut(s) 778, 936
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 3 cut(s) 27, 653, 995
TaqI TCGA 3 cut(s) 285, 383, 825
TaqII GACCGA 1 cut(s) 861
TasI AATT 3 cut(s) 613, 681, 730
TatI WGTACW 2 cut(s) 72, 636
TauI GCSGC 4 cut(s) 52, 67, 189, 252
TfiI GAWTC 3 cut(s) 17, 98, 397
Tru1I TTAA 4 cut(s) 231, 441, 725, 974
Tru9I TTAA 4 cut(s) 231, 441, 725, 974
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 2 cut(s) 25, 873
Tsp45I GTSAC 2 cut(s) 25, 873
TspDTI ATGAA 6 cut(s) 491, 497, 539, 626, 653, 975
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 75
XbaI TCTAGA 1 cut(s) 332
XmiI GTMKAC 3 cut(s) 415, 825, 945
XspI CTAG 4 cut(s) 93, 333, 411, 495
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.