RchiOBHm_Chr2g0138731

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002766
Physical Location & Seq
Forward (+)
56430224 .. 56433381
3158 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50936

Sequence Viewer

Length: 1215 bp
ATGCTTTCAGCAAAGTCAGAGTCCGATATGACTAGCTTAGCTCCATCATCACCATCAAGGTCCCCAAAGGTTCCTGTGTACTATGTTCAAAGCCCTTCAAGGGATTCACAAGTCTCACATGATGGAGACAAGTCCTCCTCAATGCAGGCCACTCCAATTTACAATAATAGCCCTATGGAGTCACCCTCCCACCCCTCCTTCGGCCGGCACTCAAGGAACTCCTCCGCGAGCCGGTTCTCAGGGATTTTCAGGTCCTCCTCAGGGAGGAAAGGCAGCCGGAAGCAGCAGAGGAACAATGACAAGGGGTGGCCGGAGTGTAAAGTGATTATGGAAGAAGGGGATTATGATGATCTTGATAAGGCTTTGTCGAGGCGTATGCAGATCTTGATTGCTCTCTTTGGCTTTGTGGTGTTGTTTACTATCTTCTGCTTAATCATTTGGGGAGCAAGCAAGCCTTTCAAAGCTGAGGTTTTAGTCAAGAGCTTGACAGTTAGCAATGTCTACGTTGGCGAGGGTTCAGACTTTTCAGGGGTTCCAACAAAGATGCTGACAGTGAATGGCTCACTAAGATTCACTGTACACAACCCTGCTTCAATTTTTGGCATTCATGTTAGCTCCACACCCATCAATCTTCTCTATTCAGGGGCGGATCCAACCACAGGCTTGGCTACAGCCGCGACTTGCCGTCTTGCCGACTTGGACTCTCGGACTCTTGGAGGCTGGCCGCTGGAGCACAGAGGCGCAGAGGCGGCAGAGCAATCTGACTCACTCAGCGACCCGGGTCACCCGGCGATCTGCAAAAGTGCAAGGCTGGAAGCCTGGAACCAGCAACTGAGCAACCCATCTCCGGTAATCCGGTCTCCGAGGCTCCGAGATCCCCACCGCGGCACCGCCACGGCGCCTCCAGCCCACCACTCCACCAGCAACCCCTCTGGTTGTCTCCGTCACTCCGTGGACCGTGTTGTGATTCTTGATTTCTTCATTTTCTTATTGATTTGTTTGATTTTGACCATTCCTGTTTCTACGGCAACCATTGAAAGAGCATTTTCAGCTATAAACATTGTTAAAAATAAACTCAGAAACAAAATGGAAGATGAGTTTCTTGGTGATTGTATGGTCCTTCACATTGAGAAAGAGTATGCTGAATCTATTGACAATGATGAGGTGATAAAAGAGTTTGAAGCTTCATGTACTCGTAGAGTTAGATTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200
Pfam Domains
Protein Families
LEA_2

Protein Analysis

404

Amino Acids

44.36

Weight (kDa)

8.37

Isoelectric Point (pI)

60.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 331 - 378 7.6e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 887, 898
AccI GTMKAC 1 cut(s) 501
AccII CGCG 3 cut(s) 227, 677, 885
AciI CCGC 8 cut(s) 225, 647, 675, 725, 749, 883, 885, 891
AclWI GGATC 3 cut(s) 644, 657, 869
AcoI YGGCCR 3 cut(s) 202, 308, 722
AcyI GRCGYC 1 cut(s) 899
AdeI CACNNNGTG 1 cut(s) 952
AfaI GTAC 3 cut(s) 80, 579, 1192
AfiI CCNNNNNNNGG 9 cut(s) 100, 200, 204, 231, 261, 264, 659, 847, 884
AgsI TTSAA 6 cut(s) 89, 99, 460, 594, 1037, 1181
AhdI GACNNNNNGTC 1 cut(s) 684
AjnI CCWGG 1 cut(s) 818
AluBI AGCT 7 cut(s) 36, 41, 464, 483, 615, 1052, 1184
AluI AGCT 7 cut(s) 36, 41, 464, 483, 615, 1052, 1184
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 4 cut(s) 118, 120, 864, 944
AlwI GGATC 3 cut(s) 644, 657, 869
AlwNI CAGNNNCTG 1 cut(s) 832
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 4 cut(s) 147, 202, 308, 722
ApeKI GCWGC 2 cut(s) 273, 283
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 2 cut(s) 743, 901
AspS9I GGNCC 4 cut(s) 60, 252, 955, 1117
AsuC2I CCSGG 3 cut(s) 779, 780, 788
AsuHPI GGTGA 5 cut(s) 42, 174, 776, 1118, 1177
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 4 cut(s) 60, 252, 955, 1117
AxyI CCTNAGG 1 cut(s) 259
BamHI GGATCC 1 cut(s) 649
BanI GGYRCC 2 cut(s) 887, 898
Bbv12I GWGCWC 1 cut(s) 735
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 285, 295
BccI CCATC 5 cut(s) 52, 61, 116, 632, 850
BceAI ACGGC 3 cut(s) 669, 912, 1041
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 1 cut(s) 820
BcnI CCSGG 3 cut(s) 779, 780, 788
BcoDI GTCTC 4 cut(s) 118, 120, 864, 944
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 902
BglII AGATCT 1 cut(s) 381
BisI GCNGC 6 cut(s) 274, 284, 675, 725, 750, 886
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 6 cut(s) 275, 285, 676, 726, 751, 887
Bme1390I CCNGG 4 cut(s) 779, 780, 788, 820
Bme18I GGWCC 4 cut(s) 60, 252, 955, 1117
BmeRI GACNNNNNGTC 1 cut(s) 684
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 4 cut(s) 60, 252, 955, 1117
BmiI GGNNCC 8 cut(s) 62, 72, 534, 651, 824, 869, 889, 900
BmrFI CCNGG 4 cut(s) 779, 780, 788, 820
BmsI GCATC 1 cut(s) 534
BoxI GACNNNNGTC 1 cut(s) 780
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 2 cut(s) 749, 888
Bpu10I CCTNAGC 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 196
BpuMI CCSGG 3 cut(s) 779, 780, 788
BsaHI GRCGYC 1 cut(s) 899
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 5 cut(s) 778, 863, 883, 894, 951
BsaWI WCCGGW 2 cut(s) 847, 855
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 886, 916
Bsc4I CCNNNNNNNGG 9 cut(s) 100, 200, 204, 231, 261, 264, 659, 847, 884
Bse118I RCCGGY 2 cut(s) 204, 231
Bse21I CCTNAGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 820
BseDI CCNNGG 5 cut(s) 778, 863, 883, 894, 951
BseLI CCNNNNNNNGG 9 cut(s) 100, 200, 204, 231, 261, 264, 659, 847, 884
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 6 cut(s) 252, 273, 456, 784, 824, 1090
BseRI GAGGAG 3 cut(s) 127, 211, 247
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 285, 295
Bsh1236I CGCG 3 cut(s) 227, 677, 885
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 4 cut(s) 149, 204, 310, 724
BshNI GGYRCC 2 cut(s) 887, 898
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 735
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 8 cut(s) 205, 232, 277, 311, 779, 788, 848, 856
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 9 cut(s) 100, 200, 204, 231, 261, 264, 659, 847, 884
BsmAI GTCTC 4 cut(s) 118, 120, 864, 944
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 603
BsnI GGCC 4 cut(s) 149, 204, 310, 724
Bso31I GGTCTC 1 cut(s) 864
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 735
Bsp1407I TGTACA 1 cut(s) 577
Bsp143I GATC 5 cut(s) 349, 381, 649, 792, 874
Bsp1720I GCTNAGC 1 cut(s) 37
BspACI CCGC 8 cut(s) 225, 647, 675, 725, 749, 883, 885, 891
BspANI GGCC 4 cut(s) 149, 204, 310, 724
BspCNI CTCAG 6 cut(s) 251, 272, 457, 783, 825, 1089
BspFNI CGCG 3 cut(s) 227, 677, 885
BspLI GGNNCC 8 cut(s) 62, 72, 534, 651, 824, 869, 889, 900
BspPI GGATC 3 cut(s) 644, 657, 869
BspT107I GGYRCC 2 cut(s) 887, 898
BspTNI GGTCTC 1 cut(s) 864
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 2 cut(s) 204, 231
BsrGI TGTACA 1 cut(s) 577
BssAI RCCGGY 2 cut(s) 204, 231
BssECI CCNNGG 5 cut(s) 778, 863, 883, 894, 951
BssMI GATC 5 cut(s) 349, 381, 649, 792, 874
BssNI GRCGYC 1 cut(s) 899
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 4 cut(s) 490, 553, 577, 959
BstACI GRCGYC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 577
BstC8I GCNNGC 6 cut(s) 147, 206, 229, 448, 452, 722
BstDEI CTNAG 8 cut(s) 37, 238, 259, 465, 566, 770, 833, 1076
BstDSI CCRYGG 3 cut(s) 883, 894, 951
BstEII GGTNACC 1 cut(s) 782
BstENI CCTNNNNNAGG 1 cut(s) 262
BstFNI CGCG 3 cut(s) 227, 677, 885
BstH2I RGCGCY 1 cut(s) 902
BstHHI GCGC 2 cut(s) 743, 901
BstKTI GATC 5 cut(s) 352, 384, 652, 795, 877
BstMAI GTCTC 4 cut(s) 118, 120, 864, 944
BstMBI GATC 5 cut(s) 349, 381, 649, 792, 874
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 5 cut(s) 674, 730, 749, 905, 1049
BstNI CCWGG 1 cut(s) 820
BstPAI GACNNNNGTC 1 cut(s) 780
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 4 cut(s) 777, 778, 786, 818
BstSFI CTRYAG 1 cut(s) 669
BstUI CGCG 3 cut(s) 227, 677, 885
BstV1I GCAGC 2 cut(s) 285, 295
BstX2I RGATCY 3 cut(s) 381, 649, 874
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 3 cut(s) 381, 649, 874
BstZI CGGCCG 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 259
BsuRI GGCC 4 cut(s) 149, 204, 310, 724
BtgI CCRYGG 3 cut(s) 883, 894, 951
BtsIMutI CAGTG 2 cut(s) 558, 573
Cac8I GCNNGC 6 cut(s) 147, 206, 229, 448, 452, 722
CaiI CAGNNNCTG 1 cut(s) 832
CfoI GCGC 2 cut(s) 743, 901
Cfr10I RCCGGY 2 cut(s) 204, 231
Cfr13I GGNCC 4 cut(s) 60, 252, 955, 1117
Cfr42I CCGCGG 1 cut(s) 886
Cfr9I CCCGGG 1 cut(s) 778
Csp6I GTAC 3 cut(s) 79, 578, 1191
CviAII CATG 3 cut(s) 119, 608, 1188
CviQI GTAC 3 cut(s) 79, 578, 1191
DdeI CTNAG 8 cut(s) 37, 238, 259, 465, 566, 770, 833, 1076
DinI GGCGCC 1 cut(s) 900
DpnI GATC 5 cut(s) 351, 383, 651, 794, 876
DpnII GATC 5 cut(s) 349, 381, 649, 792, 874
DraIII CACNNNGTG 1 cut(s) 952
DriI GACNNNNNGTC 1 cut(s) 684
EaeI YGGCCR 3 cut(s) 202, 308, 722
EagI CGGCCG 1 cut(s) 202
Eam1105I GACNNNNNGTC 1 cut(s) 684
EciI GGCGGA 1 cut(s) 662
EclXI CGGCCG 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 864
Eco47I GGWCC 4 cut(s) 60, 252, 955, 1117
Eco52I CGGCCG 1 cut(s) 202
Eco81I CCTNAGG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 778
Eco91I GGTNACC 1 cut(s) 782
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 60, 252
EcoO65I GGTNACC 1 cut(s) 782
EcoRII CCWGG 1 cut(s) 818
EgeI GGCGCC 1 cut(s) 900
EheI GGCGCC 1 cut(s) 900
FaeI CATG 3 cut(s) 122, 611, 1191
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 46
FatI CATG 3 cut(s) 118, 607, 1187
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 6 cut(s) 274, 284, 675, 725, 750, 886
Fsp4HI GCNGC 6 cut(s) 274, 284, 675, 725, 750, 886
FspBI CTAG 1 cut(s) 33
GlaI GCGC 2 cut(s) 742, 900
GluI GCNGC 6 cut(s) 274, 284, 675, 725, 750, 886
GsuI CTGGAG 2 cut(s) 749, 888
HaeII RGCGCY 1 cut(s) 902
HaeIII GGCC 4 cut(s) 149, 204, 310, 724
HapII CCGG 8 cut(s) 205, 232, 277, 311, 779, 788, 848, 856
HhaI GCGC 2 cut(s) 743, 901
Hin1I GRCGYC 1 cut(s) 899
Hin1II CATG 3 cut(s) 122, 611, 1191
Hin6I GCGC 2 cut(s) 741, 899
HinP1I GCGC 2 cut(s) 741, 899
HindIII AAGCTT 1 cut(s) 1182
HinfI GANTC 9 cut(s) 20, 104, 179, 570, 701, 709, 764, 967, 1145
HpaII CCGG 8 cut(s) 205, 232, 277, 311, 779, 788, 848, 856
HphI GGTGA 5 cut(s) 42, 174, 776, 1118, 1177
Hpy166II GTNNAC 5 cut(s) 79, 417, 502, 580, 955
Hpy188I TCNGA 8 cut(s) 19, 25, 520, 708, 763, 864, 872, 1079
Hpy188III TCNNGA 4 cut(s) 353, 385, 478, 971
Hpy8I GTNNAC 5 cut(s) 79, 417, 502, 580, 955
HpyAV CCTTC 4 cut(s) 105, 208, 329, 1130
HpyCH4III ACNGT 4 cut(s) 490, 553, 577, 959
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 4 cut(s) 145, 379, 798, 806
HpyF10VI GCNNNNNNNGC 5 cut(s) 674, 730, 749, 905, 1049
HpyF3I CTNAG 8 cut(s) 37, 238, 259, 465, 566, 770, 833, 1076
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 1 cut(s) 899
Hsp92II CATG 3 cut(s) 122, 611, 1191
HspAI GCGC 2 cut(s) 741, 899
KasI GGCGCC 1 cut(s) 898
KroI GCCGGC 1 cut(s) 204
KroNI GCCGGC 1 cut(s) 206
KspI CCGCGG 1 cut(s) 886
Kzo9I GATC 5 cut(s) 349, 381, 649, 792, 874
LmnI GCTCC 5 cut(s) 46, 443, 620, 730, 873
Lsp1109I GCAGC 2 cut(s) 285, 295
LweI GCATC 1 cut(s) 534
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 180, 782, 944
MalI GATC 5 cut(s) 351, 383, 651, 794, 876
MboI GATC 5 cut(s) 349, 381, 649, 792, 874
MboII GAAGA 5 cut(s) 344, 415, 623, 970, 1103
MflI RGATCY 3 cut(s) 381, 649, 874
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 2 cut(s) 156, 594
Mly113I GGCGCC 1 cut(s) 899
MlyI GAGTC 5 cut(s) 29, 188, 695, 703, 758
MmeI TCCRAC 2 cut(s) 560, 677
MroNI GCCGGC 1 cut(s) 204
MseI TTAA 2 cut(s) 431, 1065
MspA1I CMGCKG 2 cut(s) 727, 885
MspI CCGG 8 cut(s) 205, 232, 277, 311, 779, 788, 848, 856
MspR9I CCNGG 4 cut(s) 779, 780, 788, 820
Mva1269I GAATGC 1 cut(s) 603
MvaI CCWGG 1 cut(s) 820
MvnI CGCG 3 cut(s) 227, 677, 885
MwoI GCNNNNNNNGC 5 cut(s) 674, 730, 749, 905, 1049
NaeI GCCGGC 1 cut(s) 206
NarI GGCGCC 1 cut(s) 899
NciI CCSGG 3 cut(s) 779, 780, 788
NdeII GATC 5 cut(s) 349, 381, 649, 792, 874
NgoMIV GCCGGC 1 cut(s) 204
NlaIII CATG 3 cut(s) 122, 611, 1191
NlaIV GGNNCC 8 cut(s) 62, 72, 534, 651, 824, 869, 889, 900
NmuCI GTSAC 3 cut(s) 180, 782, 944
PctI GAATGC 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 206
PfeI GAWTC 4 cut(s) 104, 570, 967, 1145
PkrI GCNGC 6 cut(s) 275, 285, 676, 726, 751, 887
PleI GAGTC 5 cut(s) 28, 187, 695, 703, 758
PluTI GGCGCC 1 cut(s) 902
PpsI GAGTC 5 cut(s) 28, 187, 695, 703, 758
PpuMI RGGWCCY 2 cut(s) 60, 252
PshAI GACNNNNGTC 1 cut(s) 780
Psp5II RGGWCCY 2 cut(s) 60, 252
Psp6I CCWGG 1 cut(s) 818
PspEI GGTNACC 1 cut(s) 782
PspGI CCWGG 1 cut(s) 818
PspN4I GGNNCC 8 cut(s) 62, 72, 534, 651, 824, 869, 889, 900
PspPI GGNCC 4 cut(s) 60, 252, 955, 1117
PspPPI RGGWCCY 2 cut(s) 60, 252
PstNI CAGNNNCTG 1 cut(s) 832
PsuI RGATCY 3 cut(s) 381, 649, 874
RsaI GTAC 3 cut(s) 80, 579, 1192
RsaNI GTAC 3 cut(s) 79, 578, 1191
SacII CCGCGG 1 cut(s) 886
SaqAI TTAA 2 cut(s) 431, 1065
SatI GCNGC 6 cut(s) 274, 284, 675, 725, 750, 886
Sau3AI GATC 5 cut(s) 349, 381, 649, 792, 874
Sau96I GGNCC 4 cut(s) 60, 252, 955, 1117
SchI GAGTC 5 cut(s) 29, 188, 695, 703, 758
ScrFI CCNGG 4 cut(s) 779, 780, 788, 820
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 669
SfoI GGCGCC 1 cut(s) 900
Sfr303I CCGCGG 1 cut(s) 886
SgrBI CCGCGG 1 cut(s) 886
SinI GGWCC 4 cut(s) 60, 252, 955, 1117
SmaI CCCGGG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 2 cut(s) 156, 594
SsiI CCGC 8 cut(s) 225, 647, 675, 725, 749, 883, 885, 891
SspDI GGCGCC 1 cut(s) 898
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 4 cut(s) 777, 778, 786, 818
TaaI ACNGT 4 cut(s) 490, 553, 577, 959
TaiI ACGT 1 cut(s) 507
TaqI TCGA 1 cut(s) 368
TasI AATT 2 cut(s) 156, 594
TatI WGTACW 3 cut(s) 78, 577, 1190
TauI GCSGC 4 cut(s) 677, 727, 752, 888
TfiI GAWTC 4 cut(s) 104, 570, 967, 1145
Tru1I TTAA 2 cut(s) 431, 1065
Tru9I TTAA 2 cut(s) 431, 1065
TscAI CASTG 2 cut(s) 558, 580
TseFI GTSAC 3 cut(s) 180, 782, 944
TseI GCWGC 2 cut(s) 273, 283
Tsp45I GTSAC 3 cut(s) 180, 782, 944
TspDTI ATGAA 3 cut(s) 596, 970, 1176
TspGWI ACGGA 2 cut(s) 932, 940
TspMI CCCGGG 1 cut(s) 778
TspRI CASTG 2 cut(s) 558, 580
VpaK11BI GGWCC 4 cut(s) 60, 252, 955, 1117
XagI CCTNNNNNAGG 1 cut(s) 262
XmaI CCCGGG 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.