Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Forward (+)

61231781 .. 61234783

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG422300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTTTCAGCAAAGTCAGAGTCCGATATGACTAGCTTAGCTCCATCATCACCATCAAGGTCCCCAAAGGTTCCTGTGTACTATGTTCAAAGCCCTTCAAGGGATTCACAAGTCTCACATGATGGAGACAAGTCCTCCTCAATGCAGGCCACTCCAATTTACAATAATAGCCCTATGGAGTCACCCTCCCACCCCTCCTTCGGCCGGCACTCAAGGAACTCCTCCGCGAGCCGGTTCTCAGGGATTTTCAGGTCCTCCTCAGGGAGGAAAGGCAGCCGGAAGCAGCATAGGAACAATGACAAGGGGTGGCCGGAGTGTAAAGTGATTATGGAAGAAGGGGATTATGATGATCTTGATAAGGCTTTGTCGAGGCGTATGCAGATCTTGATTGCTCTCTTTGGCTTTGTGGTGTTGTTTACTATCTTCTGCTTAATCATTTGGGGAGCAAGCAAGCCTTTCAAAGCTGAGGTTTTAGTCAAGAGCTTGACAGTTAGCAATGTCTACGTTGGCGAGGGTTCAGACTTTTCAGGGGTTCCAACAAAGATGCTGACAGTGAATGGCTCACTAAGATTCACTGTACACAACCCTGCTTCAATTTTTGGCATTCATGTTAGCTCCACACCCATCAATCTTCTCTATTCAGACATTTCTGTTGCAACTGGTCAGGTTAGAAACTCTCTACCCCCTGAATCTCCATTTATTATCAAGCAATTCATAACTAATCGAAATATAATTGGTCAGTTCACACTAAAGGGTTTAATTGATTTCAAAAACCAAAACCCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

LEA_2

Protein Analysis

262

Amino Acids

28.89

Weight (kDa)

9.63

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	501
AccII	CGCG	1 cut(s)	227
AciI	CCGC	1 cut(s)	225
AcoI	YGGCCR	2 cut(s)	202, 308
AfaI	GTAC	2 cut(s)	80, 579
AfiI	CCNNNNNNNGG	6 cut(s)	100, 200, 204, 231, 261, 264
AgsI	TTSAA	5 cut(s)	89, 99, 460, 594, 769
AluBI	AGCT	5 cut(s)	36, 41, 464, 483, 615
AluI	AGCT	5 cut(s)	36, 41, 464, 483, 615
Alw26I	GTCTC	2 cut(s)	118, 120
AoxI	GGCC	3 cut(s)	147, 202, 308
ApeKI	GCWGC	2 cut(s)	273, 283
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	60, 252
AsuHPI	GGTGA	2 cut(s)	42, 174
AvaII	GGWCC	2 cut(s)	60, 252
AxyI	CCTNAGG	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	285, 295
BccI	CCATC	4 cut(s)	52, 61, 116, 632
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BcoDI	GTCTC	2 cut(s)	118, 120
BfaI	CTAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	2 cut(s)	274, 284
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	2 cut(s)	275, 285
Bme18I	GGWCC	2 cut(s)	60, 252
BmgT120I	GGNCC	2 cut(s)	60, 252
BmiI	GGNNCC	3 cut(s)	62, 72, 534
BmsI	GCATC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	6 cut(s)	100, 200, 204, 231, 261, 264
Bse118I	RCCGGY	2 cut(s)	204, 231
Bse1I	ACTGG	1 cut(s)	664
Bse21I	CCTNAGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	6 cut(s)	100, 200, 204, 231, 261, 264
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	252, 273, 456
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	3 cut(s)	127, 211, 247
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	285, 295
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	3 cut(s)	149, 204, 310
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	4 cut(s)	205, 232, 277, 311
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	6 cut(s)	100, 200, 204, 231, 261, 264
BsmAI	GTCTC	2 cut(s)	118, 120
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	149, 204, 310
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	349, 381
Bsp1720I	GCTNAGC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	3 cut(s)	149, 204, 310
BspCNI	CTCAG	3 cut(s)	251, 272, 457
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	3 cut(s)	62, 72, 534
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	2 cut(s)	204, 231
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	664
BssAI	RCCGGY	2 cut(s)	204, 231
BssMI	GATC	2 cut(s)	349, 381
Bst4CI	ACNGT	3 cut(s)	490, 553, 577
BstAUI	TGTACA	1 cut(s)	577
BstC8I	GCNNGC	5 cut(s)	147, 206, 229, 448, 452
BstDEI	CTNAG	5 cut(s)	37, 238, 259, 465, 566
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	2 cut(s)	352, 384
BstMAI	GTCTC	2 cut(s)	118, 120
BstMBI	GATC	2 cut(s)	349, 381
BstMCI	CGRYCG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	285, 295
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BstZI	CGGCCG	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	149, 204, 310
BtsIMutI	CAGTG	2 cut(s)	558, 573
Cac8I	GCNNGC	5 cut(s)	147, 206, 229, 448, 452
Cfr10I	RCCGGY	2 cut(s)	204, 231
Cfr13I	GGNCC	2 cut(s)	60, 252
Csp6I	GTAC	2 cut(s)	79, 578
CviAII	CATG	2 cut(s)	119, 608
CviQI	GTAC	2 cut(s)	79, 578
DdeI	CTNAG	5 cut(s)	37, 238, 259, 465, 566
DpnI	GATC	2 cut(s)	351, 383
DpnII	GATC	2 cut(s)	349, 381
EaeI	YGGCCR	2 cut(s)	202, 308
EagI	CGGCCG	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	60, 252
Eco52I	CGGCCG	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	2 cut(s)	60, 252
FaeI	CATG	2 cut(s)	122, 611
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	118, 607
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	274, 284
Fsp4HI	GCNGC	2 cut(s)	274, 284
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	2 cut(s)	274, 284
HaeIII	GGCC	3 cut(s)	149, 204, 310
HapII	CCGG	4 cut(s)	205, 232, 277, 311
Hin1II	CATG	2 cut(s)	122, 611
HinfI	GANTC	5 cut(s)	20, 104, 179, 570, 689
HpaII	CCGG	4 cut(s)	205, 232, 277, 311
HphI	GGTGA	2 cut(s)	42, 174
Hpy166II	GTNNAC	5 cut(s)	79, 417, 502, 580, 744
Hpy188I	TCNGA	4 cut(s)	19, 25, 520, 643
Hpy188III	TCNNGA	3 cut(s)	353, 385, 478
Hpy8I	GTNNAC	5 cut(s)	79, 417, 502, 580, 744
HpyAV	CCTTC	3 cut(s)	105, 208, 329
HpyCH4III	ACNGT	3 cut(s)	490, 553, 577
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	3 cut(s)	145, 379, 656
HpyF3I	CTNAG	5 cut(s)	37, 238, 259, 465, 566
HpySE526I	ACGT	1 cut(s)	504
Hsp92II	CATG	2 cut(s)	122, 611
KroI	GCCGGC	1 cut(s)	204
KroNI	GCCGGC	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	349, 381
LmnI	GCTCC	3 cut(s)	46, 443, 620
Lsp1109I	GCAGC	2 cut(s)	285, 295
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	1 cut(s)	180
MalI	GATC	2 cut(s)	351, 383
MboI	GATC	2 cut(s)	349, 381
MboII	GAAGA	3 cut(s)	344, 415, 623
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	5 cut(s)	156, 594, 710, 732, 759
MlyI	GAGTC	2 cut(s)	29, 188
MmeI	TCCRAC	1 cut(s)	560
MroNI	GCCGGC	1 cut(s)	204
MseI	TTAA	2 cut(s)	431, 758
MspI	CCGG	4 cut(s)	205, 232, 277, 311
Mva1269I	GAATGC	1 cut(s)	603
MvnI	CGCG	1 cut(s)	227
NaeI	GCCGGC	1 cut(s)	206
NdeII	GATC	2 cut(s)	349, 381
NgoMIV	GCCGGC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	122, 611
NlaIV	GGNNCC	3 cut(s)	62, 72, 534
NmuCI	GTSAC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	104, 570, 689
PkrI	GCNGC	2 cut(s)	275, 285
PleI	GAGTC	2 cut(s)	28, 187
PpsI	GAGTC	2 cut(s)	28, 187
PpuMI	RGGWCCY	2 cut(s)	60, 252
Psp5II	RGGWCCY	2 cut(s)	60, 252
PspN4I	GGNNCC	3 cut(s)	62, 72, 534
PspPI	GGNCC	2 cut(s)	60, 252
PspPPI	RGGWCCY	2 cut(s)	60, 252
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	2 cut(s)	80, 579
RsaNI	GTAC	2 cut(s)	79, 578
SaqAI	TTAA	2 cut(s)	431, 758
SatI	GCNGC	2 cut(s)	274, 284
Sau3AI	GATC	2 cut(s)	349, 381
Sau96I	GGNCC	2 cut(s)	60, 252
SchI	GAGTC	2 cut(s)	29, 188
SfaNI	GCATC	1 cut(s)	534
SinI	GGWCC	2 cut(s)	60, 252
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	5 cut(s)	156, 594, 710, 732, 759
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	490, 553, 577
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	2 cut(s)	368, 724
TasI	AATT	5 cut(s)	156, 594, 710, 732, 759
TatI	WGTACW	2 cut(s)	78, 577
TfiI	GAWTC	3 cut(s)	104, 570, 689
Tru1I	TTAA	2 cut(s)	431, 758
Tru9I	TTAA	2 cut(s)	431, 758
TscAI	CASTG	2 cut(s)	558, 580
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	2 cut(s)	273, 283
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	596, 703
TspRI	CASTG	2 cut(s)	558, 580
VpaK11BI	GGWCC	2 cut(s)	60, 252
XagI	CCTNNNNNAGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	501
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.