Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Reverse (-)

22892972 .. 22895258

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1192000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGCATTCAACAAAATCTGAGTCTGATATCACAAGCTTAGCTGCATCATCACCGTCAAGGTCCCCAAAGGCACCTGTGTACTATGTGCAGAGCCCTTCAAGGGACTCGCACGATGGGGACAAGTCCTCGTCAATGCACGCCACTCCAATCTACAACAACAGCCCCATGGAGTCACCCTCACACCCCTCCTTCGGCCGCCACTCGAGGAACTCCTCCGCGAGCAAATTCTCGGGGATTTTCAGGTCCTCTTCAGGTAGGAAAGGCGGTAGTAAGCAGAGGAATGACAAGGGGTGGCCGGAGTGCAAGGTGATTATGGAGGACGGGGCTTATGATGAGTTCAAAGATAATTCGCTTTCGCGGCGAGTGCAGGTCTTGATTGCTCTACTTAGCTTTGTGTTGTTGTTCACTGTCTTCTGCTTGATCATATGGGGCGCAAGCAGGCCTTACAAAGCAGAAGTAGTAGTTAAGAGCTTGGAAATCAGTAACTTCTACATTGGTGAGGGCTCGGACTTCAGTGGAGTTCCATCAAAGATGGTGACAGTGAATGGTTCATTAAGATTGAGTGTGCGCAACTCTGCTTCAATCTTTGGCATTCATGTTACCTCCTCACCTATCGGTCTCCTTTATTCGGAGATTGCGGTAGCAATTGGTCAGTTGAAGAAATATTATCAGCCTAGAAAGAGCCTCCGAACGACATCAGTGAACTTGCATGGTACTAAGGTTCCTCTATATGGAGCTGGATCAAGTTTGATATACACAAAAACTGGTGCATTGGTTCCGATTCCATTGACCTTAAACTTTGAAATCTGGTCTCGAGCGTATGTTGTAGGGAAGCTAGTGAAAACAAAGCATCGAAAGCGAATCTCATGCCCTTTGATTTTGGATCCCACTGTCACCAAGCCCATCAAGTTCAAAAAGAGCTCATGCACTTATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

LEA_2

Protein Analysis

314

Amino Acids

34.39

Weight (kDa)

9.88

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	2 cut(s)	221, 361
AciI	CCGC	5 cut(s)	199, 219, 267, 361, 641
AclWI	GGATC	3 cut(s)	751, 881, 894
AcoI	YGGCCR	2 cut(s)	196, 296
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	2 cut(s)	237, 499
AfaI	GTAC	2 cut(s)	83, 718
AfiI	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
AgsI	TTSAA	7 cut(s)	12, 102, 343, 585, 661, 806, 916
AluBI	AGCT	7 cut(s)	39, 44, 393, 474, 740, 838, 924
AluI	AGCT	7 cut(s)	39, 44, 393, 474, 740, 838, 924
Alw21I	GWGCWC	1 cut(s)	926
Alw26I	GTCTC	2 cut(s)	626, 819
AlwI	GGATC	3 cut(s)	751, 881, 894
Ama87I	CYCGRG	3 cut(s)	205, 232, 816
AoxI	GGCC	3 cut(s)	196, 296, 443
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	2 cut(s)	437, 573
AspS9I	GGNCC	2 cut(s)	63, 246
AsuHPI	GGTGA	7 cut(s)	45, 168, 322, 512, 550, 603, 889
AvaI	CYCGRG	3 cut(s)	205, 232, 816
AvaII	GGWCC	2 cut(s)	63, 246
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BamHI	GGATCC	1 cut(s)	886
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	3 cut(s)	98, 509, 926
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	926
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	4 cut(s)	110, 529, 535, 914
BcgI	CGANNNNNNTGC	2 cut(s)	852, 886
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	626, 819
BfaI	CTAG	2 cut(s)	678, 839
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	3 cut(s)	45, 199, 362
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	3 cut(s)	46, 200, 363
Bme18I	GGWCC	2 cut(s)	63, 246
BmeT110I	CYCGRG	3 cut(s)	205, 232, 816
BmgT120I	GGNCC	2 cut(s)	63, 246
BmiI	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
BmsI	GCATC	2 cut(s)	56, 862
BpiI	GAAGAC	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu1102I	GCTNAGC	1 cut(s)	40
BsaI	GGTCTC	2 cut(s)	626, 819
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
Bse1I	ACTGG	1 cut(s)	772
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	2 cut(s)	205, 598
BseX3I	CGGCCG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	2 cut(s)	110, 389
Bsh1236I	CGCG	2 cut(s)	221, 361
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	198, 298, 445
BshNI	GGYRCC	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	926
BsiHKCI	CYCGRG	3 cut(s)	205, 232, 816
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	3 cut(s)	49, 119, 134
BslI	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
BsmAI	GTCTC	2 cut(s)	626, 819
BsmFI	GGGAC	3 cut(s)	49, 119, 134
BsmI	GAATGC	2 cut(s)	7, 594
BsnI	GGCC	3 cut(s)	198, 298, 445
Bso31I	GGTCTC	2 cut(s)	626, 819
BsoBI	CYCGRG	3 cut(s)	205, 232, 816
Bsp1286I	GDGCHC	3 cut(s)	98, 509, 926
Bsp143I	GATC	3 cut(s)	423, 743, 886
Bsp1720I	GCTNAGC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	5 cut(s)	199, 219, 267, 361, 641
BspANI	GGCC	3 cut(s)	198, 298, 445
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	2 cut(s)	221, 361
BspLI	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	3 cut(s)	751, 881, 894
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	2 cut(s)	626, 819
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	3 cut(s)	423, 743, 886
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	57, 412, 544, 895
Bst6I	CTCTTC	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	141, 223, 439, 443
BstDEI	CTNAG	4 cut(s)	21, 40, 389, 720
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	2 cut(s)	221, 361
BstHHI	GCGC	2 cut(s)	437, 573
BstKTI	GATC	3 cut(s)	426, 746, 889
BstMAI	GTCTC	2 cut(s)	626, 819
BstMBI	GATC	3 cut(s)	423, 743, 886
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 367, 859
BstUI	CGCG	2 cut(s)	221, 361
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BstZI	CGGCCG	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	198, 298, 445
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	5 cut(s)	408, 523, 549, 708, 891
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	4 cut(s)	141, 223, 439, 443
CfoI	GCGC	2 cut(s)	437, 573
Cfr13I	GGNCC	2 cut(s)	63, 246
Csp6I	GTAC	2 cut(s)	82, 717
CviAII	CATG	5 cut(s)	169, 599, 713, 870, 927
CviQI	GTAC	2 cut(s)	82, 717
DdeI	CTNAG	4 cut(s)	21, 40, 389, 720
DpnI	GATC	3 cut(s)	425, 745, 888
DpnII	GATC	3 cut(s)	423, 743, 886
EaeI	YGGCCR	2 cut(s)	196, 296
EagI	CGGCCG	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	924
EclXI	CGGCCG	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	445
Eco24I	GRGCYC	3 cut(s)	98, 509, 926
Eco31I	GGTCTC	2 cut(s)	626, 819
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	63, 246
Eco52I	CGGCCG	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	924
Eco57I	CTGAAG	2 cut(s)	237, 499
Eco88I	CYCGRG	3 cut(s)	205, 232, 816
EcoICRI	GAGCTC	1 cut(s)	924
EcoO109I	RGGNCCY	2 cut(s)	63, 246
EcoRV	GATATC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	9
EcoT38I	GRGCYC	3 cut(s)	98, 509, 926
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	172, 602, 716, 873, 930
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FaqI	GGGAC	3 cut(s)	49, 119, 134
FatI	CATG	5 cut(s)	168, 598, 712, 869, 926
FauNDI	CATATG	1 cut(s)	428
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	45, 199, 362
FriOI	GRGCYC	3 cut(s)	98, 509, 926
Fsp4HI	GCNGC	3 cut(s)	45, 199, 362
FspBI	CTAG	2 cut(s)	678, 839
FspI	TGCGCA	1 cut(s)	572
GlaI	GCGC	2 cut(s)	436, 572
GluI	GCNGC	3 cut(s)	45, 199, 362
HaeIII	GGCC	3 cut(s)	198, 298, 445
HapII	CCGG	1 cut(s)	299
HhaI	GCGC	2 cut(s)	437, 573
Hin1II	CATG	5 cut(s)	172, 602, 716, 873, 930
Hin6I	GCGC	2 cut(s)	435, 571
HinP1I	GCGC	2 cut(s)	435, 571
HindIII	AAGCTT	1 cut(s)	37
HinfI	GANTC	5 cut(s)	23, 107, 173, 784, 864
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	7 cut(s)	45, 168, 322, 512, 550, 603, 889
Hpy166II	GTNNAC	3 cut(s)	82, 408, 706
Hpy188I	TCNGA	6 cut(s)	22, 28, 511, 634, 692, 783
Hpy188III	TCNNGA	2 cut(s)	376, 816
Hpy8I	GTNNAC	3 cut(s)	82, 408, 706
HpyAV	CCTTC	2 cut(s)	108, 202
HpyCH4III	ACNGT	4 cut(s)	57, 412, 544, 895
HpyCH4V	TGCA	9 cut(s)	7, 47, 91, 139, 306, 370, 712, 773, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 367, 859
HpyF3I	CTNAG	4 cut(s)	21, 40, 389, 720
Hsp92II	CATG	5 cut(s)	172, 602, 716, 873, 930
HspAI	GCGC	2 cut(s)	435, 571
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	423, 743, 886
LmnI	GCTCC	1 cut(s)	737
LpnPI	CCDG	9 cut(s)	90, 229, 240, 312, 356, 427, 726, 753, 796
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	56, 862
MaeI	CTAG	2 cut(s)	678, 839
MaeIII	GTNAC	5 cut(s)	174, 485, 538, 601, 895
MalI	GATC	3 cut(s)	425, 745, 888
MboI	GATC	3 cut(s)	423, 743, 886
MboII	GAAGA	3 cut(s)	243, 406, 673
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	3 cut(s)	98, 509, 926
MluCI	AATT	3 cut(s)	227, 349, 648
MlyI	GAGTC	3 cut(s)	32, 101, 182
Mph1103I	ATGCAT	1 cut(s)	9
MseI	TTAA	3 cut(s)	468, 557, 797
MspI	CCGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	2 cut(s)	7, 594
MvnI	CGCG	2 cut(s)	221, 361
MwoI	GCNNNNNNNGC	3 cut(s)	361, 367, 859
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	3 cut(s)	423, 743, 886
NlaIII	CATG	5 cut(s)	172, 602, 716, 873, 930
NlaIV	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
NmuCI	GTSAC	3 cut(s)	174, 538, 895
NsbI	TGCGCA	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	9
PaeR7I	CTCGAG	2 cut(s)	205, 816
PceI	AGGCCT	1 cut(s)	445
PctI	GAATGC	2 cut(s)	7, 594
PfeI	GAWTC	2 cut(s)	784, 864
PkrI	GCNGC	3 cut(s)	46, 200, 363
PleI	GAGTC	3 cut(s)	31, 101, 181
PpsI	GAGTC	3 cut(s)	31, 101, 181
PpuMI	RGGWCCY	2 cut(s)	63, 246
Psp124BI	GAGCTC	1 cut(s)	926
Psp5II	RGGWCCY	2 cut(s)	63, 246
PspN4I	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
PspPI	GGNCC	2 cut(s)	63, 246
PspPPI	RGGWCCY	2 cut(s)	63, 246
PspXI	VCTCGAGB	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	886
RsaI	GTAC	2 cut(s)	83, 718
RsaNI	GTAC	2 cut(s)	82, 717
SacI	GAGCTC	1 cut(s)	926
SaqAI	TTAA	3 cut(s)	468, 557, 797
SatI	GCNGC	3 cut(s)	45, 199, 362
Sau3AI	GATC	3 cut(s)	423, 743, 886
Sau96I	GGNCC	2 cut(s)	63, 246
SchI	GAGTC	3 cut(s)	32, 101, 182
SduI	GDGCHC	3 cut(s)	98, 509, 926
SfaNI	GCATC	2 cut(s)	56, 862
Sfr274I	CTCGAG	2 cut(s)	205, 816
SinI	GGWCC	2 cut(s)	63, 246
SlaI	CTCGAG	2 cut(s)	205, 816
SmlI	CTYRAG	2 cut(s)	205, 816
SmoI	CTYRAG	2 cut(s)	205, 816
Sse9I	AATT	3 cut(s)	227, 349, 648
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	5 cut(s)	199, 219, 267, 361, 641
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	2 cut(s)	678, 839
SstI	GAGCTC	1 cut(s)	926
StuI	AGGCCT	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	57, 412, 544, 895
TaqI	TCGA	3 cut(s)	206, 817, 856
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	3 cut(s)	227, 349, 648
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	2 cut(s)	201, 364
TfiI	GAWTC	2 cut(s)	784, 864
Tru1I	TTAA	3 cut(s)	468, 557, 797
Tru9I	TTAA	3 cut(s)	468, 557, 797
TscAI	CASTG	5 cut(s)	415, 523, 549, 708, 898
TseFI	GTSAC	3 cut(s)	174, 538, 895
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	3 cut(s)	174, 538, 895
TspDTI	ATGAA	2 cut(s)	543, 587
TspRI	CASTG	5 cut(s)	415, 523, 549, 708, 898
VpaK11BI	GGWCC	2 cut(s)	63, 246
XapI	RAATTY	1 cut(s)	227
XhoI	CTCGAG	2 cut(s)	205, 816
XspI	CTAG	2 cut(s)	678, 839
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.