RchiOBHm_Chr2g0090181

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002766
Physical Location & Seq
Forward (+)
4114651 .. 4116916
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46543

Sequence Viewer

Length: 909 bp
ATGCACGCCAAGTCCGATTCCGACGTCACGAGCTTAGCACCGTCGTCGCCGCGATCGCCGAAGCGGCCAGTGTACTATGTCCAGAGCCCATCTAGGGATTCAAACGATGGCGACAAGTCCTCCACCATGCACGCCACGCCGGCCTTCAACAGCCCAACGGAAAGCCCATCTCACCCTTCCTACGGCCGCCACTCGCGGGCCTCCTCCGCCAGCCGGGTCTCCGGTACCTTTAAAGGTTCCCGGAAACGCAGCAACGATAAAGGTTGGCCTGAATGCAAAGTGATCGAAGAAGAAGGGGACTACAATGGGCTCTATGAGGAGAAGGGCATTTCTAGAAGATGCCAGATTTTGATGGCTTTGTTTGGGTTTATTGTCATCTTTTCGATTTTCTGCTTGATTCTTTGGGGTGCTAGTAGACCTTACAAAGCTCGGGTTGCTGTTAAGAGCTTAGCTGTTCATAACTTTTATTTCGGGGAAGGATCGGACATAACTGGTGTGCCTACGAAGATGTTGACGATGAATTGTTCAATGAGGATGAGTGTGTACAACCCTGCTACGTTTTTTGGTATTCATGTCAGCTCCACCACAATTAGCCTTATGTATTCAGATATTGCTGTTGCAACTGGTCAGTTAAAGAACTACTATCAACCAAGAAAGAGCCACCGGAATGTGGCTGTGAACCTCCAAGGAGTGAAGGTGCCTTTATATGGGGCTGGGGCGAGCTTAGCAGTCGACGATACCAATGGAGGAGTTCCGATGACACTCGTGTTTGAGGTTCGGTCACGAGGGAATGTGGTGGGGAAGTTGGTGAGAACAAGGCACCGGAGGCGCGTATCTTGCTCCATGGATGTAGACTCTCATAAAACCAAAGCCATCACATTAAAAGCGAGTTCATGTACGTACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

302

Amino Acids

33.2

Weight (kDa)

9.82

Isoelectric Point (pI)

64.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 179 - 281 8.8e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 3 cut(s) 224, 697, 819
AccI GTMKAC 3 cut(s) 415, 732, 852
AccII CGCG 3 cut(s) 52, 196, 831
AciI CCGC 5 cut(s) 50, 64, 187, 196, 207
AclWI GGATC 1 cut(s) 487
AcoI YGGCCR 2 cut(s) 65, 184
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 5 cut(s) 74, 226, 545, 898, 902
AfiI CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 670, 707
AgsI TTSAA 3 cut(s) 102, 148, 528
AluBI AGCT 6 cut(s) 33, 428, 447, 452, 579, 723
AluI AGCT 6 cut(s) 33, 428, 447, 452, 579, 723
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 487
Ama87I CYCGRG 1 cut(s) 429
AoxI GGCC 5 cut(s) 65, 141, 184, 198, 266
ApeKI GCWGC 1 cut(s) 249
AsiSI GCGATCGC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 831
AspS9I GGNCC 1 cut(s) 198
AsuC2I CCSGG 2 cut(s) 215, 241
AsuHPI GGTGA 2 cut(s) 164, 820
AvaI CYCGRG 1 cut(s) 429
BanI GGYRCC 3 cut(s) 224, 697, 819
BanII GRGCYC 2 cut(s) 89, 312
BauI CACGAG 3 cut(s) 28, 764, 783
BbvI GCAGC 1 cut(s) 261
BccI CCATC 5 cut(s) 97, 101, 175, 346, 881
BceAI ACGGC 1 cut(s) 199
BcgI CGANNNNNNTGC 4 cut(s) 27, 61, 265, 299
BcnI CCSGG 2 cut(s) 215, 241
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 3 cut(s) 93, 333, 411
BglI GCCNNNNNGGC 2 cut(s) 64, 140
BisI GCNGC 4 cut(s) 50, 65, 187, 250
BlpI GCTNAGC 3 cut(s) 34, 448, 724
BlsI GCNGC 4 cut(s) 51, 66, 188, 251
Bme1390I CCNGG 2 cut(s) 215, 241
BmeT110I CYCGRG 1 cut(s) 429
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 4 cut(s) 226, 238, 699, 821
BmrFI CCNGG 2 cut(s) 215, 241
BmsI GCATC 1 cut(s) 329
Bpu1102I GCTNAGC 3 cut(s) 34, 448, 724
BpuMI CCSGG 2 cut(s) 215, 241
BsaAI YACGTR 1 cut(s) 900
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 223
BsaJI CCNNGG 2 cut(s) 685, 843
BsaWI WCCGGW 3 cut(s) 221, 663, 822
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 681, 711
Bsc4I CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 670, 707
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 68, 496, 628
BseDI CCNNGG 2 cut(s) 685, 843
BseGI GGATG 2 cut(s) 540, 853
BseLI CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 670, 707
BseNI ACTGG 3 cut(s) 68, 496, 628
BseRI GAGGAG 3 cut(s) 193, 332, 762
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 713
Bsh1236I CGCG 3 cut(s) 52, 196, 831
Bsh1285I CGRYCG 2 cut(s) 56, 187
BshFI GGCC 5 cut(s) 67, 143, 186, 200, 268
BshNI GGYRCC 3 cut(s) 224, 697, 819
BsiEI CGRYCG 2 cut(s) 56, 187
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 6 cut(s) 140, 214, 222, 241, 664, 823
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 6 cut(s) 94, 182, 196, 213, 670, 707
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 5 cut(s) 67, 143, 186, 200, 268
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 429
Bsp1286I GDGCHC 2 cut(s) 89, 312
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 3 cut(s) 53, 282, 479
Bsp1720I GCTNAGC 3 cut(s) 34, 448, 724
Bsp19I CCATGG 1 cut(s) 843
BspACI CCGC 5 cut(s) 50, 64, 187, 196, 207
BspANI GGCC 5 cut(s) 67, 143, 186, 200, 268
BspFNI CGCG 3 cut(s) 52, 196, 831
BspLI GGNNCC 4 cut(s) 226, 238, 699, 821
BspPI GGATC 1 cut(s) 487
BspT107I GGYRCC 3 cut(s) 224, 697, 819
BspTNI GGTCTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 3 cut(s) 68, 496, 628
BssAI RCCGGY 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 685, 843
BssMI GATC 3 cut(s) 53, 282, 479
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 3 cut(s) 28, 764, 783
BssT1I CCWWGG 2 cut(s) 685, 843
Bst2BI CACGAG 3 cut(s) 28, 764, 783
Bst4CI ACNGT 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 543
BstBAI YACGTR 1 cut(s) 900
BstC8I GCNNGC 6 cut(s) 6, 132, 141, 198, 211, 721
BstDEI CTNAG 3 cut(s) 34, 448, 724
BstDSI CCRYGG 1 cut(s) 843
BstF5I GGATG 2 cut(s) 540, 853
BstFNI CGCG 3 cut(s) 52, 196, 831
BstHHI GCGC 1 cut(s) 831
BstKTI GATC 3 cut(s) 56, 285, 482
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 3 cut(s) 53, 282, 479
BstMCI CGRYCG 2 cut(s) 56, 187
BstMWI GCNNNNNNNGC 9 cut(s) 55, 64, 136, 140, 206, 434, 725, 826, 837
BstSCI CCNGG 2 cut(s) 213, 239
BstSNI TACGTA 1 cut(s) 900
BstUI CGCG 3 cut(s) 52, 196, 831
BstV1I GCAGC 1 cut(s) 261
BstZI CGGCCG 1 cut(s) 184
BsuRI GGCC 5 cut(s) 67, 143, 186, 200, 268
BtgI CCRYGG 1 cut(s) 843
BtsCI GGATG 2 cut(s) 540, 853
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 6 cut(s) 6, 132, 141, 198, 211, 721
CfoI GCGC 1 cut(s) 831
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 5 cut(s) 73, 225, 544, 897, 901
CviAII CATG 4 cut(s) 127, 572, 844, 894
CviQI GTAC 5 cut(s) 73, 225, 544, 897, 901
DdeI CTNAG 3 cut(s) 34, 448, 724
DpnI GATC 3 cut(s) 55, 284, 481
DpnII GATC 3 cut(s) 53, 282, 479
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 65, 184
EagI CGGCCG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 196
EclXI CGGCCG 1 cut(s) 184
Eco105I TACGTA 1 cut(s) 900
Eco130I CCWWGG 2 cut(s) 685, 843
Eco24I GRGCYC 2 cut(s) 89, 312
Eco31I GGTCTC 1 cut(s) 223
Eco52I CGGCCG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 429
EcoT14I CCWWGG 2 cut(s) 685, 843
EcoT38I GRGCYC 2 cut(s) 89, 312
ErhI CCWWGG 2 cut(s) 685, 843
FaeI CATG 4 cut(s) 130, 575, 847, 897
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 126, 571, 843, 893
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 3 cut(s) 415, 732, 852
Fnu4HI GCNGC 4 cut(s) 50, 65, 187, 250
FokI GGATG 2 cut(s) 547, 860
FriOI GRGCYC 2 cut(s) 89, 312
Fsp4HI GCNGC 4 cut(s) 50, 65, 187, 250
FspBI CTAG 3 cut(s) 93, 333, 411
GlaI GCGC 1 cut(s) 830
GluI GCNGC 4 cut(s) 50, 65, 187, 250
GsaI CCCAGC 1 cut(s) 717
HaeIII GGCC 5 cut(s) 67, 143, 186, 200, 268
HapII CCGG 6 cut(s) 140, 214, 222, 241, 664, 823
HhaI GCGC 1 cut(s) 831
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 4 cut(s) 130, 575, 847, 897
Hin6I GCGC 1 cut(s) 829
HinP1I GCGC 1 cut(s) 829
HincII GTYRAC 2 cut(s) 513, 733
HindII GTYRAC 2 cut(s) 513, 733
HinfI GANTC 4 cut(s) 17, 98, 397, 854
HpaII CCGG 6 cut(s) 140, 214, 222, 241, 664, 823
HphI GGTGA 2 cut(s) 164, 820
Hpy166II GTNNAC 7 cut(s) 73, 416, 513, 544, 679, 733, 853
Hpy188I TCNGA 5 cut(s) 16, 22, 484, 607, 756
Hpy188III TCNNGA 4 cut(s) 28, 82, 333, 783
Hpy8I GTNNAC 7 cut(s) 73, 416, 513, 544, 679, 733, 853
Hpy99I CGWCG 4 cut(s) 26, 46, 49, 737
HpyAV CCTTC 6 cut(s) 154, 186, 287, 316, 470, 688
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 3 cut(s) 24, 557, 899
HpyCH4V TGCA 4 cut(s) 4, 130, 276, 620
HpyF10VI GCNNNNNNNGC 9 cut(s) 55, 64, 136, 140, 206, 434, 725, 826, 837
HpyF3I CTNAG 3 cut(s) 34, 448, 724
HpySE526I ACGT 3 cut(s) 24, 557, 899
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 4 cut(s) 130, 575, 847, 897
HspAI GCGC 1 cut(s) 829
KpnI GGTACC 1 cut(s) 228
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Kzo9I GATC 3 cut(s) 53, 282, 479
LmnI GCTCC 2 cut(s) 584, 845
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 329
MaeI CTAG 3 cut(s) 93, 333, 411
MaeII ACGT 3 cut(s) 24, 557, 899
MaeIII GTNAC 2 cut(s) 25, 780
MalI GATC 3 cut(s) 55, 284, 481
MboI GATC 3 cut(s) 53, 282, 479
MboII GAAGA 4 cut(s) 299, 302, 348, 517
MhlI GDGCHC 2 cut(s) 89, 312
MluCI AATT 2 cut(s) 520, 588
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 139
MseI TTAA 4 cut(s) 231, 441, 632, 881
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 6 cut(s) 140, 214, 222, 241, 664, 823
MspR9I CCNGG 2 cut(s) 215, 241
Mva1269I GAATGC 1 cut(s) 278
MvnI CGCG 3 cut(s) 52, 196, 831
MwoI GCNNNNNNNGC 9 cut(s) 55, 64, 136, 140, 206, 434, 725, 826, 837
NaeI GCCGGC 1 cut(s) 141
NciI CCSGG 2 cut(s) 215, 241
NcoI CCATGG 1 cut(s) 843
NdeII GATC 3 cut(s) 53, 282, 479
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 4 cut(s) 130, 575, 847, 897
NlaIV GGNNCC 4 cut(s) 226, 238, 699, 821
NmuCI GTSAC 2 cut(s) 25, 780
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 278
PdiI GCCGGC 1 cut(s) 141
PfeI GAWTC 3 cut(s) 17, 98, 397
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 4 cut(s) 51, 66, 188, 251
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 848
Ppu21I YACGTR 1 cut(s) 900
PspFI CCCAGC 1 cut(s) 713
PspN4I GGNNCC 4 cut(s) 226, 238, 699, 821
PspPI GGNCC 1 cut(s) 198
PvuI CGATCG 1 cut(s) 56
RgaI GCGATCGC 1 cut(s) 56
RsaI GTAC 5 cut(s) 74, 226, 545, 898, 902
RsaNI GTAC 5 cut(s) 73, 225, 544, 897, 901
RseI CAYNNNNRTG 1 cut(s) 666
SalI GTCGAC 1 cut(s) 731
SaqAI TTAA 4 cut(s) 231, 441, 632, 881
SatI GCNGC 4 cut(s) 50, 65, 187, 250
Sau3AI GATC 3 cut(s) 53, 282, 479
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 2 cut(s) 215, 241
SduI GDGCHC 2 cut(s) 89, 312
SfaAI GCGATCGC 1 cut(s) 56
SfaNI GCATC 1 cut(s) 329
SgfI GCGATCGC 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 666
SnaBI TACGTA 1 cut(s) 900
Sse9I AATT 2 cut(s) 520, 588
SsiI CCGC 5 cut(s) 50, 64, 187, 196, 207
SspMI CTAG 3 cut(s) 93, 333, 411
StyD4I CCNGG 2 cut(s) 213, 239
StyI CCWWGG 2 cut(s) 685, 843
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 3 cut(s) 27, 560, 902
TaqI TCGA 3 cut(s) 285, 383, 732
TaqII GACCGA 1 cut(s) 768
TasI AATT 2 cut(s) 520, 588
TatI WGTACW 2 cut(s) 72, 543
TauI GCSGC 3 cut(s) 52, 67, 189
TfiI GAWTC 3 cut(s) 17, 98, 397
Tru1I TTAA 4 cut(s) 231, 441, 632, 881
Tru9I TTAA 4 cut(s) 231, 441, 632, 881
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 2 cut(s) 25, 780
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 2 cut(s) 25, 780
TspDTI ATGAA 4 cut(s) 446, 533, 560, 882
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 75
XbaI TCTAGA 1 cut(s) 332
XmiI GTMKAC 3 cut(s) 415, 732, 852
XspI CTAG 3 cut(s) 93, 333, 411
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.