Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Reverse (-)

546160 .. 546967

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0005400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTCATTCCCTAGCCTCGCCGCCGGCTACTGCAACAACGCCAATCTCAGCAAGGACCAAGAGCAAGACACATTTTCCGTCGTCTCTCAAAGTCACGACTGGCCATCAAGTTTCAGATGGTCCTAACAAACTTGTTCACCGCAGGGCTGCGGGCTTGGGTTTGGCTGGTGCTGCGCTGAGCGTTATTGTGGGTGACCGGAGTGCCAATGCAGCCGCCAGAAGGCCGCCCCCGCCTCCGGATGACGAGAAAAAGGAGAAGAAGGATCCCAATGTGAGCGGTGCTCTTGCAAAAGTGTTGGCTAGCAAAAAGAGAAAGGAAGCCATGAAGGAATCCGTGGCTAAACTAAGAGAAAAAGGGAAGCCTGTTCCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

125

Amino Acids

13.06

Weight (kDa)

10.45

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	7 cut(s)	23, 142, 152, 216, 227, 233, 279
AclWI	GGATC	2 cut(s)	260, 273
AcoI	YGGCCR	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	222, 238
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	2 cut(s)	260, 273
Aor13HI	TCCGGA	1 cut(s)	238
AoxI	GGCC	2 cut(s)	103, 224
ApeKI	GCWGC	3 cut(s)	149, 173, 212
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	57, 122
AsuHPI	GGTGA	2 cut(s)	131, 206
AsuNHI	GCTAGC	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	57, 122
BalI	TGGCCA	1 cut(s)	105
BamHI	GGATCC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	3 cut(s)	136, 160, 224
BccI	CCATC	2 cut(s)	113, 114
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	2 cut(s)	14, 303
BisI	GCNGC	6 cut(s)	23, 150, 174, 213, 216, 227
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	6 cut(s)	24, 151, 175, 214, 217, 228
Bme18I	GGWCC	2 cut(s)	57, 122
BmgT120I	GGNCC	2 cut(s)	57, 122
BmiI	GGNNCC	1 cut(s)	267
BmtI	GCTAGC	1 cut(s)	306
BplI	GAGNNNNNCTC	2 cut(s)	268, 300
Bpu1102I	GCTNAGC	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	2 cut(s)	198, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 238
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	106
BseAI	TCCGGA	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	222, 238
BseMII	CTCAG	2 cut(s)	63, 170
BseNI	ACTGG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	136, 160, 224
BshFI	GGCC	2 cut(s)	105, 226
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	3 cut(s)	26, 199, 239
BslI	CCNNNNNNNGG	2 cut(s)	222, 238
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	105, 226
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	265
Bsp1720I	GCTNAGC	1 cut(s)	179
BspACI	CCGC	7 cut(s)	23, 142, 152, 216, 227, 233, 279
BspANI	GGCC	2 cut(s)	105, 226
BspCNI	CTCAG	2 cut(s)	62, 171
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	267
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	260, 273
BsrBI	CCGCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	27, 154, 304
BstDEI	CTNAG	3 cut(s)	49, 179, 347
BstDSI	CCRYGG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 212, 232
BstPI	GGTNACC	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	136, 160, 224
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	105, 226
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	27, 154, 304
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	57, 122
CviAII	CATG	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	49, 179, 347
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	57, 122
Eco91I	GGTNACC	1 cut(s)	194
EcoO65I	GGTNACC	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	328
FaiI	YATR	1 cut(s)	326
FatI	CATG	1 cut(s)	324
FauI	CCCGC	2 cut(s)	145, 240
Fnu4HI	GCNGC	6 cut(s)	23, 150, 174, 213, 216, 227
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	6 cut(s)	23, 150, 174, 213, 216, 227
FspBI	CTAG	2 cut(s)	14, 303
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	6 cut(s)	23, 150, 174, 213, 216, 227
HaeIII	GGCC	2 cut(s)	105, 226
HapII	CCGG	3 cut(s)	26, 199, 239
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	3 cut(s)	26, 199, 239
HphI	GGTGA	2 cut(s)	131, 206
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	97, 239, 371
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	216, 256, 322
HpyCH4V	TGCA	3 cut(s)	35, 212, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 212, 232
HpyF3I	CTNAG	3 cut(s)	49, 179, 347
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	39, 87, 130, 153, 212, 232, 252
Lsp1109I	GCAGC	3 cut(s)	136, 160, 224
MaeI	CTAG	2 cut(s)	14, 303
MaeIII	GTNAC	2 cut(s)	94, 194
MalI	GATC	1 cut(s)	267
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	105
MnlI	CCTC	2 cut(s)	28, 246
Mox20I	TGGCCA	1 cut(s)	105
MroI	TCCGGA	1 cut(s)	238
MroNI	GCCGGC	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	105
MspI	CCGG	3 cut(s)	26, 199, 239
MwoI	GCNNNNNNNGC	3 cut(s)	173, 212, 232
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	1 cut(s)	265
NgoMIV	GCCGGC	1 cut(s)	25
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	94, 194
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	6 cut(s)	24, 151, 175, 214, 217, 228
PspEI	GGTNACC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	57, 122
PsuI	RGATCY	1 cut(s)	265
SatI	GCNGC	6 cut(s)	23, 150, 174, 213, 216, 227
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	57, 122
SduI	GDGCHC	1 cut(s)	286
SinI	GGWCC	2 cut(s)	57, 122
SsiI	CCGC	7 cut(s)	23, 142, 152, 216, 227, 233, 279
SspMI	CTAG	2 cut(s)	14, 303
TauI	GCSGC	3 cut(s)	25, 218, 229
TfiI	GAWTC	1 cut(s)	332
TseFI	GTSAC	2 cut(s)	94, 194
TseI	GCWGC	3 cut(s)	149, 173, 212
Tsp45I	GTSAC	2 cut(s)	94, 194
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	2 cut(s)	69, 325
VpaK11BI	GGWCC	2 cut(s)	57, 122
XspI	CTAG	2 cut(s)	14, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.