AT3G26070

plastid-lipid-associated protein 4, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005370
Physical Location & Seq
Forward (+)
9526687 .. 9528703
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G26070.1

Sequence Viewer

Length: 729 bp
ATGGCTTTACCTTCGTGCTTAAAGACTGGAGCTTTAATGTCTCCGGCCACTGGATTTAATTTTTCCGGCAGTCTTATGAAGTCAGACAGCGGCTTCGCCGTTCCGACAAAGTTACAGAGTACTCGAAAAGGTGATCGAGAGAGATTGAGAGTCCAAGCTATTTTCAGTTTCCCTCCTGCGTTTCTGACAAGAAACGGTCGAGCTGAGAAACAGAAACAGCTCAAACAAGAACTTCTTGAAGCCATTGAGCCTCTTGAACGTGGTGCTACGGCCTCGCCTGATGACCAGCTTCGGATTGATCAGTTAGCGCGTAAAGTGGAAGCAGTTAATCCCACCAAGGAGCCTTTGAAGTCTGATTTGGTCAATGGAAAATGGGAGCTCATTTATACAACCTCTGCTTCGATTTTGCAGGCAAAGAAACCAAGGTTCTTAAGATCAATAACCAACTACCAATCTATCAATGTGGATACACTTAAGGTGCAAAACATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACATAAAACCCCTCAATTCGAAGAAGGTTGCTGTGAAACTCCAAGTGTTTAAAATTCTCGGATTTATTCCTATAAAAGCACCTGATAGCGCCCGCGGTGAACTTGAGATTACCTATGTGGACGAGGAACTACGGTTATCAAGAGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTTGATCCCACTTATCGAATCCCTCTTTGA

Protein Analysis

242

Amino Acids

27.16

Weight (kDa)

9.71

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 72 - 232 5.3e-39 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 310, 618
AciI CCGC 3 cut(s) 90, 616, 618
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 576
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 50
AflII CTTAAG 2 cut(s) 430, 473
AgsI TTSAA 4 cut(s) 239, 257, 349, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 6 cut(s) 32, 158, 203, 220, 289, 379
AluI AGCT 6 cut(s) 32, 158, 203, 220, 289, 379
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 3 cut(s) 45, 485, 516
AlwI GGATC 1 cut(s) 698
AoxI GGCC 3 cut(s) 45, 270, 497
ApoI RAATTY 1 cut(s) 576
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 2 cut(s) 310, 614
AsuHPI GGTGA 3 cut(s) 143, 632, 680
AsuII TTCGAA 1 cut(s) 542
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 381
BceAI ACGGC 2 cut(s) 83, 285
BciVI GTATCC 1 cut(s) 460
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 45, 485, 516
BfoI RGCGCY 1 cut(s) 615
BfrI CTTAAG 2 cut(s) 430, 473
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmcAI AGTACT 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 342
BpmI CTGGAG 2 cut(s) 48, 540
Bpu14I TTCGAA 1 cut(s) 542
BpuEI CTTGAG 1 cut(s) 647
BsaJI CCNNGG 3 cut(s) 336, 422, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 31, 55, 523
BseDI CCNNGG 3 cut(s) 336, 422, 616
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 3 cut(s) 31, 55, 523
Bsh1236I CGCG 2 cut(s) 310, 618
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 47, 272, 499
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 381
BsiSI CCGG 2 cut(s) 44, 66
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 45, 485, 516
BsnI GGCC 3 cut(s) 47, 272, 499
Bsp119I TTCGAA 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 4 cut(s) 133, 298, 434, 703
BspACI CCGC 3 cut(s) 90, 616, 618
BspANI GGCC 3 cut(s) 47, 272, 499
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 2 cut(s) 310, 618
BspLI GGNNCC 1 cut(s) 342
BspPI GGATC 1 cut(s) 698
BspT104I TTCGAA 1 cut(s) 542
BspTI CTTAAG 2 cut(s) 430, 473
BsrI ACTGG 3 cut(s) 31, 55, 523
BssECI CCNNGG 3 cut(s) 336, 422, 616
BssMI GATC 4 cut(s) 133, 298, 434, 703
BssT1I CCWWGG 2 cut(s) 336, 422
Bst4CI ACNGT 2 cut(s) 197, 657
BstAFI CTTAAG 2 cut(s) 430, 473
BstBI TTCGAA 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 411, 616
BstDEI CTNAG 1 cut(s) 204
BstDSI CCRYGG 1 cut(s) 616
BstFNI CGCG 2 cut(s) 310, 618
BstH2I RGCGCY 1 cut(s) 615
BstHHI GCGC 2 cut(s) 310, 614
BstKTI GATC 4 cut(s) 136, 301, 437, 706
BstMAI GTCTC 3 cut(s) 45, 485, 516
BstMBI GATC 4 cut(s) 133, 298, 434, 703
BstMCI CGRYCG 1 cut(s) 199
BstUI CGCG 2 cut(s) 310, 618
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 3 cut(s) 47, 272, 499
BtgI CCRYGG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 411, 616
CfoI GCGC 2 cut(s) 310, 614
Cfr42I CCGCGG 1 cut(s) 619
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 487
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 204
DpnI GATC 4 cut(s) 135, 300, 436, 705
DpnII GATC 4 cut(s) 133, 298, 434, 703
DraI TTTAAA 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 2 cut(s) 336, 422
Eco24I GRGCYC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 336, 422
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 2 cut(s) 336, 422
FaeI CATG 1 cut(s) 490
FaiI YATR 8 cut(s) 77, 387, 488, 507, 527, 596, 639, 689
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 1 cut(s) 486
FauI CCCGC 1 cut(s) 623
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 91
GlaI GCGC 2 cut(s) 309, 613
GluI GCNGC 1 cut(s) 91
GsuI CTGGAG 2 cut(s) 48, 540
HaeII RGCGCY 1 cut(s) 615
HaeIII GGCC 3 cut(s) 47, 272, 499
HapII CCGG 2 cut(s) 44, 66
HhaI GCGC 2 cut(s) 310, 614
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 2 cut(s) 308, 612
HinP1I GCGC 2 cut(s) 308, 612
HinfI GANTC 2 cut(s) 150, 717
HpaII CCGG 2 cut(s) 44, 66
HphI GGTGA 3 cut(s) 143, 632, 680
Hpy166II GTNNAC 2 cut(s) 623, 643
Hpy188I TCNGA 6 cut(s) 85, 105, 186, 294, 355, 584
Hpy188III TCNNGA 4 cut(s) 137, 236, 254, 663
Hpy8I GTNNAC 2 cut(s) 623, 643
HpyAV CCTTC 2 cut(s) 21, 541
HpyCH4III ACNGT 2 cut(s) 197, 657
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 409, 481
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 2 cut(s) 308, 612
Ksp22I TGATCA 1 cut(s) 298
KspI CCGCGG 1 cut(s) 619
Kzo9I GATC 4 cut(s) 133, 298, 434, 703
LmnI GCTCC 3 cut(s) 29, 340, 376
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 3 cut(s) 111, 514, 668
MalI GATC 4 cut(s) 135, 300, 436, 705
MboI GATC 4 cut(s) 133, 298, 434, 703
MboII GAAGA 2 cut(s) 556, 706
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 3 cut(s) 58, 538, 576
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 7 cut(s) 183, 261, 283, 403, 545, 640, 659
MseI TTAA 7 cut(s) 20, 35, 57, 327, 431, 474, 573
MspA1I CMGCKG 2 cut(s) 90, 618
MspCI CTTAAG 2 cut(s) 430, 473
MspI CCGG 2 cut(s) 44, 66
MvnI CGCG 2 cut(s) 310, 618
NdeII GATC 4 cut(s) 133, 298, 434, 703
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 668
NspV TTCGAA 1 cut(s) 542
PfeI GAWTC 1 cut(s) 717
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp124BI GAGCTC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 342
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SacI GAGCTC 1 cut(s) 381
SacII CCGCGG 1 cut(s) 619
SaqAI TTAA 7 cut(s) 20, 35, 57, 327, 431, 474, 573
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 4 cut(s) 133, 298, 434, 703
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 381
Sfr303I CCGCGG 1 cut(s) 619
SfuI TTCGAA 1 cut(s) 542
SgrBI CCGCGG 1 cut(s) 619
SmlI CTYRAG 3 cut(s) 430, 473, 626
SmoI CTYRAG 3 cut(s) 430, 473, 626
Sse9I AATT 3 cut(s) 58, 538, 576
SsiI CCGC 3 cut(s) 90, 616, 618
SstI GAGCTC 1 cut(s) 381
StyI CCWWGG 2 cut(s) 336, 422
TaaI ACNGT 2 cut(s) 197, 657
TaiI ACGT 1 cut(s) 262
TaqI TCGA 6 cut(s) 124, 136, 199, 401, 542, 715
TasI AATT 3 cut(s) 58, 538, 576
TatI WGTACW 1 cut(s) 119
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 717
Tru1I TTAA 7 cut(s) 20, 35, 57, 327, 431, 474, 573
Tru9I TTAA 7 cut(s) 20, 35, 57, 327, 431, 474, 573
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 1 cut(s) 92
TspRI CASTG 1 cut(s) 55
Vha464I CTTAAG 2 cut(s) 430, 473
XapI RAATTY 1 cut(s) 576
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.