Prupe.1G566700_v2.0.a1

plastid-lipid-associated protein 4

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
46247930 .. 46253777
5848 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G566700.1

Sequence Viewer

Length: 756 bp
ATGGCCTTATCTTCTTCTCCTCTGTCACCTACGCTCCTCACAACCACCCAATCCTCCTCTTCACCTTCAACCCCAAAACTACTCCCTTCTCATTCTCCACTCACCTCCTTCAGCTTTCCAACCAAACCCACGACCACCCACACCATTCACTTTCACAGACTCTCGAGCACTTCAGCCTCTGACAAATGGAGAGCCAAAGTTTCATTCTTTCCTGCTTTTTCGAGCAAAGGCAAAGATGCTAAAACTCTCAAGGAGGAGCTTCTTGATGCCATTGCATCGCTTGATCGAGGCGCTGATGCCACTCCAGAGGACCAGCAAACAGTTGATCAGATTGCACGCAAACTTGAAGCAGTTAATCCAACGAAGGAGCCACTCAAATCTGATTTACTGAATGGAAAATGGGAGCTTATATACACTACTTCAAAGTCTATTCTGCAAACTCAGAGACCCAAATTTTTGAGATCAAGGGTAAATTACCAAGCAATCAATGCTGACACACTTAGGGCCCAAAATATGGAATCATGGCCAACTTTCAATCAGGTAACAGCTGATTTGACGCCTTTGAATGCAAGAAAAGTGGCTGTAAAATTTGATTATTTCAAAATTGCAGGTCTGATACCTGTTAAGGCACCTGGAAGAGCACGCGGAGAACTGGAAATTACATATTTGGATGAAGAACTTCGTGTCTCAAGGGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTTGATCCGTCTTATCGAGTTCCTGTCTGA

Protein Analysis

252

Amino Acids

27.88

Weight (kDa)

9.67

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 628
AccB7I CCANNNNNTGG 1 cut(s) 514
AccII CGCG 1 cut(s) 645
AciI CCGC 1 cut(s) 645
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 1 cut(s) 524
AcsI RAATTY 2 cut(s) 452, 587
AcuI CTGAAG 2 cut(s) 94, 156
AcyI GRCGYC 1 cut(s) 557
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 7 cut(s) 69, 347, 423, 535, 565, 601, 721
AjnI CCWGG 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 4 cut(s) 114, 259, 406, 548
AluI AGCT 4 cut(s) 114, 259, 406, 548
Alw21I GWGCWC 2 cut(s) 170, 643
Alw26I GTCTC 2 cut(s) 439, 691
AlwI GGATC 1 cut(s) 725
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 163
AoxI GGCC 3 cut(s) 3, 504, 524
ApaI GGGCCC 1 cut(s) 508
ApoI RAATTY 2 cut(s) 452, 587
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 3 cut(s) 310, 504, 505
AsuHPI GGTGA 4 cut(s) 18, 54, 94, 707
AvaI CYCGRG 1 cut(s) 163
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 508
BalI TGGCCA 1 cut(s) 526
BanI GGYRCC 1 cut(s) 628
BanII GRGCYC 1 cut(s) 508
Bbv12I GWGCWC 2 cut(s) 170, 643
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 439, 691
BfoI RGCGCY 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 599
Bme1390I CCNGG 1 cut(s) 633
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 310, 504, 505
BmiI GGNNCC 3 cut(s) 369, 506, 630
BmrFI CCNGG 1 cut(s) 633
BmsI GCATC 4 cut(s) 226, 256, 284, 286
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 233, 673
BsaHI GRCGYC 1 cut(s) 557
BsaI GGTCTC 1 cut(s) 439
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 633
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 657
BseRI GAGGAG 4 cut(s) 9, 26, 46, 269
BseSI GKGCMC 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 645
BshFI GGCC 3 cut(s) 5, 506, 526
BshNI GGYRCC 1 cut(s) 628
BsiHKAI GWGCWC 2 cut(s) 170, 643
BsiHKCI CYCGRG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 2 cut(s) 439, 691
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 3 cut(s) 5, 506, 526
Bso31I GGTCTC 1 cut(s) 439
BsoBI CYCGRG 1 cut(s) 163
Bsp120I GGGCCC 1 cut(s) 504
Bsp1286I GDGCHC 3 cut(s) 170, 508, 643
Bsp143I GATC 4 cut(s) 283, 325, 461, 730
BspACI CCGC 1 cut(s) 645
BspANI GGCC 3 cut(s) 5, 506, 526
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 3 cut(s) 369, 506, 630
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 1 cut(s) 725
BspQI GCTCTTC 1 cut(s) 631
BspT107I GGYRCC 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 1 cut(s) 657
BssMI GATC 4 cut(s) 283, 325, 461, 730
BssNI GRCGYC 1 cut(s) 557
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 2 cut(s) 64, 631
BstACI GRCGYC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 337, 643
BstDEI CTNAG 2 cut(s) 441, 500
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 4 cut(s) 286, 328, 464, 733
BstMAI GTCTC 2 cut(s) 439, 691
BstMBI GATC 4 cut(s) 283, 325, 461, 730
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNI CCWGG 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 1 cut(s) 645
BsuRI GGCC 3 cut(s) 5, 506, 526
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 1 cut(s) 676
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 2 cut(s) 337, 643
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 310, 504, 505
CseI GACGC 1 cut(s) 565
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 1 cut(s) 522
DdeI CTNAG 2 cut(s) 441, 500
DpnI GATC 4 cut(s) 285, 327, 463, 732
DpnII GATC 4 cut(s) 283, 325, 461, 730
EaeI YGGCCR 1 cut(s) 524
Eam1104I CTCTTC 2 cut(s) 64, 631
EarI CTCTTC 2 cut(s) 64, 631
Eco24I GRGCYC 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 94, 156
Eco88I CYCGRG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 508
FaeI CATG 1 cut(s) 525
FaiI YATR 5 cut(s) 410, 412, 515, 523, 664
FatI CATG 1 cut(s) 521
FbaI TGATCA 1 cut(s) 325
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 1 cut(s) 508
GlaI GCGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 3 cut(s) 5, 506, 526
HgaI GACGC 1 cut(s) 565
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 1 cut(s) 525
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 2 cut(s) 159, 518
HphI GGTGA 4 cut(s) 18, 54, 94, 707
Hpy188I TCNGA 6 cut(s) 181, 330, 382, 444, 615, 755
Hpy188III TCNNGA 4 cut(s) 163, 263, 305, 718
HpyAV CCTTC 4 cut(s) 75, 96, 118, 358
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 5 cut(s) 275, 335, 436, 569, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 2 cut(s) 441, 500
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 1 cut(s) 525
HspAI GCGC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 283, 325, 461, 730
LguI GCTCTTC 1 cut(s) 631
LmnI GCTCC 4 cut(s) 39, 256, 367, 403
LpnPI CCDG 9 cut(s) 225, 318, 326, 524, 594, 618, 633, 638, 645
LweI GCATC 4 cut(s) 226, 256, 284, 286
MaeIII GTNAC 3 cut(s) 24, 541, 695
MalI GATC 4 cut(s) 285, 327, 463, 732
MboI GATC 4 cut(s) 283, 325, 461, 730
MboII GAAGA 5 cut(s) 3, 6, 51, 648, 686
MhlI GDGCHC 3 cut(s) 170, 508, 643
MlsI TGGCCA 1 cut(s) 526
MluCI AATT 5 cut(s) 452, 472, 587, 603, 657
MluNI TGGCCA 1 cut(s) 526
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 2 cut(s) 143, 383
MnlI CCTC 9 cut(s) 30, 47, 64, 67, 115, 187, 247, 281, 301
Mox20I TGGCCA 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 678
MscI TGGCCA 1 cut(s) 526
MseI TTAA 2 cut(s) 354, 624
Msp20I TGGCCA 1 cut(s) 526
MspA1I CMGCKG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 633
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 1 cut(s) 488
NdeII GATC 4 cut(s) 283, 325, 461, 730
NlaIII CATG 1 cut(s) 525
NlaIV GGNNCC 3 cut(s) 369, 506, 630
NmuCI GTSAC 2 cut(s) 24, 695
PaeR7I CTCGAG 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 631
PctI GAATGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 514
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 3 cut(s) 369, 506, 630
PspOMI GGGCCC 1 cut(s) 504
PspPI GGNCC 3 cut(s) 310, 504, 505
PstNI CAGNNNCTG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 548
SapI GCTCTTC 1 cut(s) 631
SaqAI TTAA 2 cut(s) 354, 624
Sau3AI GATC 4 cut(s) 283, 325, 461, 730
Sau96I GGNCC 3 cut(s) 310, 504, 505
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 633
SduI GDGCHC 3 cut(s) 170, 508, 643
SfaNI GCATC 4 cut(s) 226, 256, 284, 286
Sfr274I CTCGAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 163
SmlI CTYRAG 3 cut(s) 163, 248, 688
SmoI CTYRAG 3 cut(s) 163, 248, 688
Sse9I AATT 5 cut(s) 452, 472, 587, 603, 657
SsiI CCGC 1 cut(s) 645
StyD4I CCNGG 1 cut(s) 631
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 4 cut(s) 164, 221, 286, 742
TasI AATT 5 cut(s) 452, 472, 587, 603, 657
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 2 cut(s) 354, 624
Tru9I TTAA 2 cut(s) 354, 624
TseFI GTSAC 2 cut(s) 24, 695
Tsp45I GTSAC 2 cut(s) 24, 695
TspDTI ATGAA 3 cut(s) 192, 687, 703
TspGWI ACGGA 1 cut(s) 723
Van91I CCANNNNNTGG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 2 cut(s) 452, 587
XhoI CTCGAG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.