Rh7BG345300

plastid-lipid-associated protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005370
Physical Location & Seq
Forward (+)
36093468 .. 36097402
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG345300.1

Sequence Viewer

Length: 672 bp
ATGAACCCGAGCATGGCATTATCTTCTTCCTGGTCACCTAGGCTCCTTACAACCACTCAGTTCTCCTCACCTCCCAAACTAGTCCATTCTCATTCCCCGCTCACCTCCTTGACCTTCCCTTCCAAACCCACCACCACCACCCACACCATTGTTCCCGCGCTTTCCCACAAATGGAGAGCCAGAATTTCCTTCTTTCCTGCGTTTTTGAGCAAAGGCAAAGACGCCAAAACTCTCAAGGAGGAGCTTCTCGATGCCATTGCTTCGCTCGATCGAGGCGCCGACGCCACTCCAGAGGACCAGCAAGCTGTTGATCAGATTGCACGCAAACTTGAAGCAGTTACTCCAGTAAAGGAGCCACTCAAATCTGGTCTACTCGATGGAAAATGGGAGCTTCTCTATACTACTTCAAAATCTATTCTCCAAACTGGGAGACCCAAGTTTTTAAGATCGAGAGTAAACTACCAAGCAATCAATGTGGACACTCTCAGGGCCCAAAATATGGAGTCTTGGCCAACTTTCAATCAGGTAACAGCCGATCTAACACCTCTGAATGCAAGAAAAGTGGCTGTAAAATTCGACTATTTCAAGATTGCAGGCCTGATTCCTGTTAAGGCACCTGACAGAGCCCGTGGTGCACTGGAAATTACATATTTGGATGAAGAGTTGCGGTGA

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

9.69

Isoelectric Point (pI)

33.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 77 - 223 2.2e-28 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 275, 613
AccB7I CCANNNNNTGG 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 370
AccII CGCG 1 cut(s) 158
AciI CCGC 3 cut(s) 98, 156, 667
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 2 cut(s) 183, 572
AcyI GRCGYC 3 cut(s) 222, 276, 282
AfiI CCNNNNNNNGG 3 cut(s) 13, 171, 499
AgsI TTSAA 4 cut(s) 332, 408, 520, 586
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 3 cut(s) 244, 305, 391
AluI AGCT 3 cut(s) 244, 305, 391
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 424
Alw44I GTGCAC 1 cut(s) 633
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 3 cut(s) 489, 509, 595
ApaI GGGCCC 1 cut(s) 493
ApaLI GTGCAC 1 cut(s) 633
ApoI RAATTY 2 cut(s) 183, 572
AspA2I CCTAGG 1 cut(s) 38
AspLEI GCGC 2 cut(s) 160, 278
AspS9I GGNCC 3 cut(s) 295, 489, 490
AsuHPI GGTGA 3 cut(s) 27, 60, 94
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 1 cut(s) 295
AvrII CCTAGG 1 cut(s) 38
BaeGI GKGCMC 2 cut(s) 493, 637
BalI TGGCCA 1 cut(s) 511
BanI GGYRCC 2 cut(s) 275, 613
BanII GRGCYC 2 cut(s) 493, 628
Bbv12I GWGCWC 1 cut(s) 637
BccI CCATC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 31
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 424
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 2 cut(s) 39, 80
BfoI RGCGCY 1 cut(s) 279
BlnI CCTAGG 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 3 cut(s) 295, 489, 490
BmiI GGNNCC 5 cut(s) 44, 277, 354, 491, 615
BmrFI CCNGG 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 273, 327
BpuEI CTTGAG 1 cut(s) 218
BsaHI GRCGYC 3 cut(s) 222, 276, 282
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 38, 628
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 171, 499
Bse1I ACTGG 3 cut(s) 344, 430, 642
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 38, 628
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 3 cut(s) 13, 171, 499
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 71, 499
BseNI ACTGG 3 cut(s) 344, 430, 642
BseRI GAGGAG 2 cut(s) 55, 254
BseSI GKGCMC 2 cut(s) 493, 637
Bsh1236I CGCG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 491, 511, 597
BshNI GGYRCC 2 cut(s) 275, 613
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 637
BsiHKCI CYCGRG 1 cut(s) 7
BslI CCNNNNNNNGG 3 cut(s) 13, 171, 499
BsmAI GTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 3 cut(s) 491, 511, 597
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 1 cut(s) 7
Bsp120I GGGCCC 1 cut(s) 489
Bsp1286I GDGCHC 3 cut(s) 493, 628, 637
Bsp143I GATC 4 cut(s) 268, 310, 446, 535
BspACI CCGC 3 cut(s) 98, 156, 667
BspANI GGCC 3 cut(s) 491, 511, 597
BspCNI CTCAG 2 cut(s) 70, 498
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 5 cut(s) 44, 277, 354, 491, 615
BspT107I GGYRCC 2 cut(s) 275, 613
BspTNI GGTCTC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 3 cut(s) 344, 430, 642
BssECI CCNNGG 2 cut(s) 38, 628
BssMI GATC 4 cut(s) 268, 310, 446, 535
BssNI GRCGYC 3 cut(s) 222, 276, 282
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 654
BstACI GRCGYC 3 cut(s) 222, 276, 282
BstC8I GCNNGC 3 cut(s) 303, 322, 595
BstDEI CTNAG 2 cut(s) 57, 485
BstDSI CCRYGG 1 cut(s) 628
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 1 cut(s) 661
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 279
BstHHI GCGC 2 cut(s) 160, 278
BstKTI GATC 4 cut(s) 271, 313, 449, 538
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 4 cut(s) 268, 310, 446, 535
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 632
BstNI CCWGG 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 29
BstSLI GKGCMC 2 cut(s) 493, 637
BstUI CGCG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 491, 511, 597
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 635
Cac8I GCNNGC 3 cut(s) 303, 322, 595
CfoI GCGC 2 cut(s) 160, 278
Cfr13I GGNCC 3 cut(s) 295, 489, 490
CseI GACGC 2 cut(s) 230, 290
CspCI CAANNNNNGTGG 4 cut(s) 456, 491, 543, 578
CviAII CATG 1 cut(s) 13
DdeI CTNAG 2 cut(s) 57, 485
DinI GGCGCC 1 cut(s) 277
DpnI GATC 4 cut(s) 270, 312, 448, 537
DpnII GATC 4 cut(s) 268, 310, 446, 535
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 597
Eco24I GRGCYC 2 cut(s) 493, 628
Eco31I GGTCTC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 295
Eco88I CYCGRG 1 cut(s) 7
Eco91I GGTNACC 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 489
EcoO65I GGTNACC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 2 cut(s) 493, 628
EgeI GGCGCC 1 cut(s) 277
EheI GGCGCC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 16
FaiI YATR 4 cut(s) 14, 399, 500, 649
FatI CATG 1 cut(s) 12
FauI CCCGC 2 cut(s) 105, 163
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 370
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 2 cut(s) 493, 628
FspBI CTAG 2 cut(s) 39, 80
GlaI GCGC 2 cut(s) 159, 277
GsuI CTGGAG 2 cut(s) 273, 327
HaeII RGCGCY 1 cut(s) 279
HaeIII GGCC 3 cut(s) 491, 511, 597
HgaI GACGC 2 cut(s) 230, 290
HhaI GCGC 2 cut(s) 160, 278
Hin1I GRCGYC 3 cut(s) 222, 276, 282
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 2 cut(s) 158, 276
HinP1I GCGC 2 cut(s) 158, 276
HinfI GANTC 2 cut(s) 503, 601
HphI GGTGA 3 cut(s) 27, 60, 94
Hpy166II GTNNAC 4 cut(s) 371, 457, 478, 635
Hpy188I TCNGA 2 cut(s) 315, 549
Hpy188III TCNNGA 4 cut(s) 248, 290, 450, 586
Hpy8I GTNNAC 4 cut(s) 371, 457, 478, 635
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 124, 129, 199
HpyCH4V TGCA 4 cut(s) 320, 554, 593, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 632
HpyF3I CTNAG 2 cut(s) 57, 485
Hsp92I GRCGYC 3 cut(s) 222, 276, 282
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 2 cut(s) 158, 276
KasI GGCGCC 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 4 cut(s) 268, 310, 446, 535
LmnI GCTCC 4 cut(s) 48, 241, 352, 388
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 39, 80
MaeIII GTNAC 3 cut(s) 33, 337, 526
MalI GATC 4 cut(s) 270, 312, 448, 537
MbiI CCGCTC 1 cut(s) 100
MboI GATC 4 cut(s) 268, 310, 446, 535
MboII GAAGA 3 cut(s) 15, 18, 671
MhlI GDGCHC 3 cut(s) 493, 628, 637
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 3 cut(s) 183, 572, 642
MluNI TGGCCA 1 cut(s) 511
Mly113I GGCGCC 1 cut(s) 276
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 7 cut(s) 76, 81, 115, 232, 266, 286, 555
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 2 cut(s) 443, 609
Msp20I TGGCCA 1 cut(s) 511
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 632
NarI GGCGCC 1 cut(s) 276
NdeII GATC 4 cut(s) 268, 310, 446, 535
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 5 cut(s) 44, 277, 354, 491, 615
NmuCI GTSAC 1 cut(s) 33
PceI AGGCCT 1 cut(s) 597
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 499
Ple19I CGATCG 1 cut(s) 271
PleI GAGTC 1 cut(s) 511
PluTI GGCGCC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 29
PspEI GGTNACC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 5 cut(s) 44, 277, 354, 491, 615
PspOMI GGGCCC 1 cut(s) 489
PspPI GGNCC 3 cut(s) 295, 489, 490
PvuI CGATCG 1 cut(s) 271
SaqAI TTAA 2 cut(s) 443, 609
Sau3AI GATC 4 cut(s) 268, 310, 446, 535
Sau96I GGNCC 3 cut(s) 295, 489, 490
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 3 cut(s) 493, 628, 637
SfaNI GCATC 1 cut(s) 241
SfoI GGCGCC 1 cut(s) 277
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 3 cut(s) 183, 572, 642
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 3 cut(s) 98, 156, 667
SspDI GGCGCC 1 cut(s) 275
SspMI CTAG 2 cut(s) 39, 80
StuI AGGCCT 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 38
TaqI TCGA 6 cut(s) 249, 267, 271, 375, 449, 576
TasI AATT 3 cut(s) 183, 572, 642
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 443, 609
Tru9I TTAA 2 cut(s) 443, 609
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 17, 672
TspRI CASTG 1 cut(s) 642
Van91I CCANNNNNTGG 1 cut(s) 499
VneI GTGCAC 1 cut(s) 633
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 183, 572
XmaJI CCTAGG 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 370
XspI CTAG 2 cut(s) 39, 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.