Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Reverse (-)

37335450 .. 37337147

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g37370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGAGATTTGCCAATTTCCGAAACATTTTTACGAGGATACAATGGCAGAGCAGAGAGCAGCATGGCCTTATCTTGTTCTTGGTCACCTATGCTTCTCACAACCACCCAATCCTCCTCCTCCTCCGCCGCGTCGCCGTCGACTCCTAAACTAGTGCCCTGTCATTTTCCGGGGAAACCCACCACCACCACCATTCACACACTCTCCAGCTGCAGTTCAAGTTCTCAGAAATGGAGAGCCAAAGTTTCATTCTTTCCTGCATTTTTGAACAAACGCAAAGATACTCGGCCTCTCAAGGACGAGCTTCTTGACGCCATTGCTCCGCTCGATCGAGGCGCCGATGCCACTCCGGAGGACCAGCAAACTGTTGATCAGATTGCACGCAAACTTGAAGCAGTAAACCCAACAAAGGAACCACTCAAATCTGATTTACTCAATGGAAAATGGGAGCTTATATACACTACTTCAATGTCTATTCTGCAAACTCAGAGACCCAAAATTTTGATCGATCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

173

Amino Acids

18.96

Weight (kDa)

9.05

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	3 cut(s)	126, 129, 323
AcsI	RAATTY	1 cut(s)	498
AcyI	GRCGYC	2 cut(s)	312, 336
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	219, 268, 392, 468
AhlI	ACTAGT	1 cut(s)	151
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	210, 304, 451
AluI	AGCT	3 cut(s)	210, 304, 451
Alw26I	GTCTC	1 cut(s)	484
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	2 cut(s)	66, 287
ApeKI	GCWGC	2 cut(s)	60, 210
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	72, 197
BceAI	ACGGC	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	484
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	211
BfoI	RGCGCY	1 cut(s)	339
BfuI	GTATCC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	61, 129, 211
BlsI	GCNGC	3 cut(s)	62, 130, 212
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	2 cut(s)	337, 414
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	171
Bsa29I	ATCGAT	1 cut(s)	507
BsaHI	GRCGYC	2 cut(s)	312, 336
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	349
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	239, 500
BseRI	GAGGAG	3 cut(s)	106, 109, 112
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	72, 197
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	68, 289
BshNI	GGYRCC	1 cut(s)	335
BshVI	ATCGAT	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	170, 350
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	68, 289
Bso31I	GGTCTC	1 cut(s)	484
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	328, 370, 504, 508
BspACI	CCGC	3 cut(s)	126, 129, 323
BspANI	GGCC	2 cut(s)	68, 289
BspCNI	CTCAG	2 cut(s)	238, 499
BspDI	ATCGAT	1 cut(s)	507
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	337, 414
BspMAI	CTGCAG	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	4 cut(s)	328, 370, 504, 508
BssNI	GRCGYC	2 cut(s)	312, 336
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	2 cut(s)	312, 336
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	225, 486
BstEII	GGTNACC	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	4 cut(s)	331, 373, 507, 511
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	4 cut(s)	328, 370, 504, 508
BstMCI	CGRYCG	1 cut(s)	331
BstPI	GGTNACC	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	159
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	72, 197
Bsu15I	ATCGAT	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	68, 289
BsuTUI	ATCGAT	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	507
CseI	GACGC	2 cut(s)	120, 320
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	6 cut(s)	68, 210, 239, 289, 304, 451
CviKI_1	RGCY	6 cut(s)	68, 210, 239, 289, 304, 451
DdeI	CTNAG	2 cut(s)	225, 486
DinI	GGCGCC	1 cut(s)	337
DpnI	GATC	4 cut(s)	330, 372, 506, 510
DpnII	GATC	4 cut(s)	328, 370, 504, 508
EciI	GGCGGA	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	337
EheI	GGCGCC	1 cut(s)	337
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	65, 92, 455, 457
FatI	CATG	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	61, 129, 211
Fsp4HI	GCNGC	3 cut(s)	61, 129, 211
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	3 cut(s)	61, 129, 211
GsuI	CTGGAG	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	68, 289
HapII	CCGG	2 cut(s)	170, 350
HgaI	GACGC	2 cut(s)	120, 320
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	2 cut(s)	312, 336
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	170, 350
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	141, 400
Hpy188I	TCNGA	5 cut(s)	22, 228, 375, 427, 489
Hpy188III	TCNNGA	2 cut(s)	308, 350
Hpy8I	GTNNAC	2 cut(s)	141, 400
Hpy99I	CGWCG	2 cut(s)	136, 142
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	213, 260, 380, 481
HpyF3I	CTNAG	2 cut(s)	225, 486
Hsp92I	GRCGYC	2 cut(s)	312, 336
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	336
KasI	GGCGCC	1 cut(s)	335
Kpn2I	TCCGGA	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	328, 370, 504, 508
LmnI	GCTCC	2 cut(s)	325, 448
LpnPI	CCDG	6 cut(s)	172, 183, 220, 270, 363, 371
Lsp1109I	GCAGC	2 cut(s)	72, 197
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	4 cut(s)	330, 372, 506, 510
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	4 cut(s)	328, 370, 504, 508
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	2 cut(s)	15, 498
Mly113I	GGCGCC	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	8 cut(s)	29, 124, 127, 130, 133, 300, 326, 346
MroI	TCCGGA	1 cut(s)	349
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	2 cut(s)	170, 350
MspR9I	CCNGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	131
NarI	GGCGCC	1 cut(s)	336
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	328, 370, 504, 508
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	337, 414
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	62, 130, 212
Ple19I	CGATCG	1 cut(s)	331
PleI	GAGTC	1 cut(s)	136
PluTI	GGCGCC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	136
PspEI	GGTNACC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	337, 414
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	139
SatI	GCNGC	3 cut(s)	61, 129, 211
Sau3AI	GATC	4 cut(s)	328, 370, 504, 508
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	91, 212, 306, 453, 518
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	211
SfoI	GGCGCC	1 cut(s)	337
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	151
Sse9I	AATT	2 cut(s)	15, 498
SsiI	CCGC	3 cut(s)	126, 129, 323
SspDI	GGCGCC	1 cut(s)	335
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	4 cut(s)	140, 327, 331, 507
TasI	AATT	2 cut(s)	15, 498
TauI	GCSGC	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	2 cut(s)	60, 210
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	498
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.