Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Reverse (-)

23662108 .. 23667105

Gene Structure 4998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAACCTGAGCATGGCATTATCTTCTTCTTGGTCACTTACGCTCCTTACAACCACCCAATCCTCCTCACCTCCCAAACTTGTCCATTCTCATTCCCCGCTCACCTCCTTGACCTTCCCTTCCAAACCCACCACCACCACCCACACCATTGTTCCCGCGCTTTCCCACAAATGGAGAGCCAGAATTTCCTTCTTTCCTGCGTTTTCGAGCAAAGGCAAAGGCGCCAAAACTCTCAAGGAGGAGCTTCTCGATGCCATTGCTTCACTCGATCGAGGCGCCGACGCCACTCCAGAGGATCAGCAAGCTGTTGATCAGATTGCACGCAAACTTGAAGCAGTTACTCCAGTAAAGGAGCCACTCAAATCTGGTCTACTCGATGGAAAATGGGAGCTTCTCTACACTACTTCAAAATCTCTTCTCCAAACTGGGAGACCCAAGTTTTTGAGATCGAGAGTGAACTACCAAGCAATCAATGTGGACACTCTCAGGGCCCAAAATATGGAGTCGTGGCCAACTTTCAATCAGGTAACAGCAGATTTAATACCTCTGAATGCAAGAAAAGTGGCTGTAAAATTCGACTATTTCAAGATTGCAGGCCTGATACCTGTTAAGGCACCAGACAAAACCCCTGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGTGTCTCAAGAGGTGATAAAGGAAACCTGTTCATCTTGAAATTGGTTGATCCATCCTATCGAGTTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

246

Amino Acids

27.25

Weight (kDa)

9.59

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	77 - 236	8.2e-36	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	221, 275, 613
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	98, 156
AclWI	GGATC	2 cut(s)	303, 710
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	2 cut(s)	183, 572
AcyI	GRCGYC	3 cut(s)	222, 276, 282
AfiI	CCNNNNNNNGG	3 cut(s)	13, 171, 499
AgsI	TTSAA	5 cut(s)	332, 408, 520, 586, 706
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	3 cut(s)	244, 305, 391
AluI	AGCT	3 cut(s)	244, 305, 391
Alw26I	GTCTC	2 cut(s)	424, 676
AlwI	GGATC	2 cut(s)	303, 710
AoxI	GGCC	3 cut(s)	489, 509, 595
ApaI	GGGCCC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	183, 572
AspLEI	GCGC	3 cut(s)	160, 224, 278
AspS9I	GGNCC	2 cut(s)	489, 490
AsuHPI	GGTGA	4 cut(s)	60, 94, 644, 692
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	511
BanI	GGYRCC	3 cut(s)	221, 275, 613
BanII	GRGCYC	1 cut(s)	493
BccI	CCATC	2 cut(s)	371, 727
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	630
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	424, 676
BfoI	RGCGCY	2 cut(s)	225, 279
Bme1390I	CCNGG	1 cut(s)	630
BmgT120I	GGNCC	2 cut(s)	489, 490
BmiI	GGNNCC	5 cut(s)	223, 277, 354, 491, 615
BmrFI	CCNGG	1 cut(s)	630
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	435
BpmI	CTGGAG	2 cut(s)	273, 327
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	218, 658
BsaHI	GRCGYC	3 cut(s)	222, 276, 282
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 171, 499
Bse1I	ACTGG	3 cut(s)	344, 430, 642
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	2 cut(s)	661, 719
BseLI	CCNNNNNNNGG	3 cut(s)	13, 171, 499
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	499
BseNI	ACTGG	3 cut(s)	344, 430, 642
BseRI	GAGGAG	2 cut(s)	55, 254
BseSI	GKGCMC	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	491, 511, 597
BshNI	GGYRCC	3 cut(s)	221, 275, 613
BsiEI	CGRYCG	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	13, 171, 499
BsmAI	GTCTC	2 cut(s)	424, 676
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	3 cut(s)	491, 511, 597
Bso31I	GGTCTC	1 cut(s)	424
Bsp120I	GGGCCC	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp143I	GATC	5 cut(s)	268, 295, 310, 446, 715
BspACI	CCGC	2 cut(s)	98, 156
BspANI	GGCC	3 cut(s)	491, 511, 597
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	5 cut(s)	223, 277, 354, 491, 615
BspPI	GGATC	2 cut(s)	303, 710
BspT107I	GGYRCC	3 cut(s)	221, 275, 613
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	344, 430, 642
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	5 cut(s)	268, 295, 310, 446, 715
BssNI	GRCGYC	3 cut(s)	222, 276, 282
Bst2UI	CCWGG	1 cut(s)	630
Bst6I	CTCTTC	2 cut(s)	420, 654
BstACI	GRCGYC	3 cut(s)	222, 276, 282
BstC8I	GCNNGC	3 cut(s)	303, 322, 595
BstDEI	CTNAG	2 cut(s)	8, 485
BstF5I	GGATG	2 cut(s)	661, 719
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	2 cut(s)	225, 279
BstHHI	GCGC	3 cut(s)	160, 224, 278
BstKTI	GATC	5 cut(s)	271, 298, 313, 449, 718
BstMAI	GTCTC	2 cut(s)	424, 676
BstMBI	GATC	5 cut(s)	268, 295, 310, 446, 715
BstMCI	CGRYCG	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	491, 511, 597
BtsCI	GGATG	2 cut(s)	661, 719
Cac8I	GCNNGC	3 cut(s)	303, 322, 595
CfoI	GCGC	3 cut(s)	160, 224, 278
Cfr13I	GGNCC	2 cut(s)	489, 490
CseI	GACGC	1 cut(s)	290
CspCI	CAANNNNNGTGG	4 cut(s)	456, 491, 543, 578
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	9 cut(s)	179, 244, 305, 355, 391, 491, 511, 566, 597
CviKI_1	RGCY	9 cut(s)	179, 244, 305, 355, 391, 491, 511, 566, 597
DdeI	CTNAG	2 cut(s)	8, 485
DinI	GGCGCC	2 cut(s)	223, 277
DpnI	GATC	5 cut(s)	270, 297, 312, 448, 717
DpnII	GATC	5 cut(s)	268, 295, 310, 446, 715
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	2 cut(s)	420, 654
EarI	CTCTTC	2 cut(s)	420, 654
Eco147I	AGGCCT	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	493
EgeI	GGCGCC	2 cut(s)	223, 277
EheI	GGCGCC	2 cut(s)	223, 277
FaeI	CATG	1 cut(s)	16
FaiI	YATR	3 cut(s)	14, 500, 649
FatI	CATG	1 cut(s)	12
FauI	CCCGC	2 cut(s)	105, 163
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	370
FokI	GGATG	2 cut(s)	668, 706
FriOI	GRGCYC	1 cut(s)	493
GlaI	GCGC	3 cut(s)	159, 223, 277
GsuI	CTGGAG	2 cut(s)	273, 327
HaeII	RGCGCY	2 cut(s)	225, 279
HaeIII	GGCC	3 cut(s)	491, 511, 597
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	3 cut(s)	160, 224, 278
Hin1I	GRCGYC	3 cut(s)	222, 276, 282
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	3 cut(s)	158, 222, 276
HinP1I	GCGC	3 cut(s)	158, 222, 276
HinfI	GANTC	1 cut(s)	503
HphI	GGTGA	4 cut(s)	60, 94, 644, 692
Hpy166II	GTNNAC	4 cut(s)	371, 457, 478, 635
Hpy188I	TCNGA	3 cut(s)	315, 549, 740
Hpy188III	TCNNGA	6 cut(s)	248, 290, 450, 586, 675, 703
Hpy8I	GTNNAC	4 cut(s)	371, 457, 478, 635
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	124, 129, 199
HpyCH4V	TGCA	3 cut(s)	320, 554, 593
HpyF3I	CTNAG	2 cut(s)	8, 485
Hsp92I	GRCGYC	3 cut(s)	222, 276, 282
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	3 cut(s)	158, 222, 276
KasI	GGCGCC	2 cut(s)	221, 275
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	5 cut(s)	268, 295, 310, 446, 715
LmnI	GCTCC	4 cut(s)	48, 241, 352, 388
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	3 cut(s)	33, 337, 526
MalI	GATC	5 cut(s)	270, 297, 312, 448, 717
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	5 cut(s)	268, 295, 310, 446, 715
MboII	GAAGA	4 cut(s)	15, 18, 407, 671
MhlI	GDGCHC	1 cut(s)	493
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	4 cut(s)	183, 572, 642, 707
MluNI	TGGCCA	1 cut(s)	511
Mly113I	GGCGCC	2 cut(s)	222, 276
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	9 cut(s)	73, 76, 81, 115, 232, 266, 286, 555, 671
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	2 cut(s)	539, 609
Msp20I	TGGCCA	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	630
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	158
NarI	GGCGCC	2 cut(s)	222, 276
NdeII	GATC	5 cut(s)	268, 295, 310, 446, 715
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	5 cut(s)	223, 277, 354, 491, 615
NmuCI	GTSAC	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	597
PctI	GAATGC	1 cut(s)	556
PflMI	CCANNNNNTGG	1 cut(s)	499
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	1 cut(s)	511
PluTI	GGCGCC	2 cut(s)	225, 279
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	5 cut(s)	223, 277, 354, 491, 615
PspOMI	GGGCCC	1 cut(s)	489
PspPI	GGNCC	2 cut(s)	489, 490
PvuI	CGATCG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	539, 609
Sau3AI	GATC	5 cut(s)	268, 295, 310, 446, 715
Sau96I	GGNCC	2 cut(s)	489, 490
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	1 cut(s)	493
SfaNI	GCATC	1 cut(s)	241
SfoI	GGCGCC	2 cut(s)	223, 277
SmlI	CTYRAG	2 cut(s)	233, 673
SmoI	CTYRAG	2 cut(s)	233, 673
Sse9I	AATT	4 cut(s)	183, 572, 642, 707
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	2 cut(s)	98, 156
SspDI	GGCGCC	2 cut(s)	221, 275
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	628
TaqI	TCGA	8 cut(s)	206, 249, 267, 271, 375, 449, 576, 727
TasI	AATT	4 cut(s)	183, 572, 642, 707
Tru1I	TTAA	2 cut(s)	539, 609
Tru9I	TTAA	2 cut(s)	539, 609
TseFI	GTSAC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	3 cut(s)	17, 672, 688
Van91I	CCANNNNNTGG	1 cut(s)	499
XapI	RAATTY	2 cut(s)	183, 572
XmiI	GTMKAC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.