Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000774.1

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Reverse (-)

130840 .. 131184

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000774.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggcattatcttcttcctggttacctacgctccttacaaccacccaatcctcctcacctcccaaactagtccattctcattcctcgctcacctccttgaccttcccttccaaacccaccaccaccacccacaccgttgttcccgcgctttcccacaaatggagagccagaatttccttctttcctgcgtttttgagcaaaggcaaagacgccaaaactctcaaggaggagcttctcgatgccattgcttcgctcgatcgaggcgccgacgccactccagaggaccagctagctgttgatcaggtcggtttacctgtagtgtttcctatcctctgcttttcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

114

Amino Acids

12.29

Weight (kDa)

7.95

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	171
AcyI	GRCGYC	3 cut(s)	210, 264, 270
AfiI	CCNNNNNNNGG	1 cut(s)	159
AhlI	ACTAGT	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	3 cut(s)	232, 289, 293
AluI	AGCT	3 cut(s)	232, 289, 293
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	2 cut(s)	148, 266
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	48, 82
AsuNHI	GCTAGC	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	263
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	19
BclI	TGATCA	1 cut(s)	298
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	2 cut(s)	68, 290
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	1 cut(s)	229
BmtI	GCTAGC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	206
BsaHI	GRCGYC	3 cut(s)	210, 264, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	1 cut(s)	243
BseRI	GAGGAG	2 cut(s)	43, 242
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	256, 298
BspACI	CCGC	1 cut(s)	144
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	265
BspOI	GCTAGC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	243
BssMI	GATC	2 cut(s)	256, 298
BssNI	GRCGYC	3 cut(s)	210, 264, 270
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	136
BstACI	GRCGYC	3 cut(s)	210, 264, 270
BstC8I	GCNNGC	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	148, 266
BstKTI	GATC	2 cut(s)	259, 301
BstMBI	GATC	2 cut(s)	256, 298
BstMCI	CGRYCG	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	19
BstPI	GGTNACC	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	2 cut(s)	148, 266
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	2 cut(s)	218, 278
CviJI	RGCY	4 cut(s)	167, 232, 289, 293
CviKI_1	RGCY	4 cut(s)	167, 232, 289, 293
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	2 cut(s)	258, 300
DpnII	GATC	2 cut(s)	256, 298
Eco47I	GGWCC	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	21
EcoO65I	GGTNACC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	17
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	298
FspBI	CTAG	2 cut(s)	68, 290
GlaI	GCGC	2 cut(s)	147, 265
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	267
HgaI	GACGC	2 cut(s)	218, 278
HhaI	GCGC	2 cut(s)	148, 266
Hin1I	GRCGYC	3 cut(s)	210, 264, 270
Hin6I	GCGC	2 cut(s)	146, 264
HinP1I	GCGC	2 cut(s)	146, 264
HphI	GGTGA	2 cut(s)	48, 82
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188III	TCNNGA	3 cut(s)	236, 278, 342
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	112, 117, 187
HpyCH4III	ACNGT	1 cut(s)	136
Hsp92I	GRCGYC	3 cut(s)	210, 264, 270
HspAI	GCGC	2 cut(s)	146, 264
KasI	GGCGCC	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	256, 298
LmnI	GCTCC	2 cut(s)	36, 229
LpnPI	CCDG	8 cut(s)	4, 31, 181, 198, 287, 291, 299, 327
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	68, 290
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	2 cut(s)	258, 300
MboI	GATC	2 cut(s)	256, 298
MboII	GAAGA	2 cut(s)	3, 6
MluCI	AATT	1 cut(s)	171
Mly113I	GGCGCC	1 cut(s)	264
MnlI	CCTC	9 cut(s)	61, 64, 69, 94, 103, 220, 254, 274, 341
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	146
NarI	GGCGCC	1 cut(s)	264
NdeII	GATC	2 cut(s)	256, 298
NheI	GCTAGC	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	265
Ple19I	CGATCG	1 cut(s)	259
PluTI	GGCGCC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	283
PvuI	CGATCG	1 cut(s)	259
Sau3AI	GATC	2 cut(s)	256, 298
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	9 cut(s)	28, 61, 95, 104, 234, 291, 295, 306, 316
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	315
SfoI	GGCGCC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	67
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	1 cut(s)	144
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	68, 290
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	237, 255, 259
TasI	AATT	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	171
XspI	CTAG	2 cut(s)	68, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.