Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Reverse (-)

23618190 .. 23622898

Gene Structure 4709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAACCTGAGCATGGCATTATCTTCTTCCTGGTCACCTACGCTCCTTACAACCACCCAGTTCTCCTCACCTCCCAAACTAGTCCATTTTCATTCCCCGCTCACCTCCTTGACCTTCCCTTCCAAACCCACCACCACCACCCACACCATTGTTCCCGCGCTTTCCCACAAATGGAGAGCCAGAATTTCCTTCTTTCCTGCGTTTTTGAGCAAAGGCAAAGACGCCAAAACTCTCAAGGAGGAGCTTCTCGATGCCATTGCTTCGCTCGATCGAGGCGCCGACGCCACTCCAGAGGACCAGCAAGCTGTTGATCAGATTACACGCAAACTTGAAGCAGTTACTCCAGTAAAGGAGCCACTCAAATCTGGTCTACTCGATGGAAAATGGGAGCTTCTCTATACTACTTCAAAATCTATTCTCCAGACTGGGAGACCCAAGTTTTTAAGATCAAGAGTAAACTACCAAGCAATCAATGTGGACACACTCAGGGCCCAAAATATGGAGTCATGGCCAACTTTCAATCAGTTTGAGTGTGATTTCACTTTGGTTGATGATGCCTTCGATTGCATCAGATTAAGCATTCTATTGCTATTAAACTTCCAGTGTGTGCAGTATCCCTCCAGTGGTGATATTGCAGCTACTGCATGTCGTGTAACAGCTAATTTAACACCTCTGAATGCAAGCAAAGTGGCTGTAAAATTCGACTATTTCAAGATTGCAGGCCTGATACCTGTTAAGGCACCTGACAGAGCCCGTGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGTGTCTCAAGAGGCGATAAAGGAAACCTGTTCATCTTGAAATTGGTTGATCCATCCTATCGAGTTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

288

Amino Acids

32.11

Weight (kDa)

8.8

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	77 - 278	7.5e-37	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	275, 739
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	98, 156
AclWI	GGATC	1 cut(s)	836
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	2 cut(s)	183, 698
AcyI	GRCGYC	3 cut(s)	222, 276, 282
AfiI	CCNNNNNNNGG	4 cut(s)	13, 171, 499, 623
AgsI	TTSAA	5 cut(s)	332, 408, 520, 712, 832
AhlI	ACTAGT	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	244, 305, 391, 638, 659
AluI	AGCT	5 cut(s)	244, 305, 391, 638, 659
Alw26I	GTCTC	2 cut(s)	424, 802
AlwI	GGATC	1 cut(s)	836
AlwNI	CAGNNNCTG	1 cut(s)	641
AoxI	GGCC	3 cut(s)	489, 509, 721
ApaI	GGGCCC	1 cut(s)	493
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	183, 698
AspLEI	GCGC	2 cut(s)	160, 278
AspS9I	GGNCC	3 cut(s)	295, 489, 490
AsuHPI	GGTGA	5 cut(s)	27, 60, 94, 638, 770
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	511
BanI	GGYRCC	2 cut(s)	275, 739
BanII	GRGCYC	2 cut(s)	493, 754
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	2 cut(s)	371, 853
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	624
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	424, 802
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	624
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	295, 489, 490
BmiI	GGNNCC	4 cut(s)	277, 354, 491, 741
BmrFI	CCNGG	1 cut(s)	31
BmrI	ACTGGG	2 cut(s)	52, 435
BmsI	GCATC	3 cut(s)	241, 544, 576
BmuI	ACTGGG	2 cut(s)	52, 435
BpmI	CTGGAG	4 cut(s)	273, 327, 404, 604
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	218, 784
BsaHI	GRCGYC	3 cut(s)	222, 276, 282
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	754
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 171, 499, 623
Bse1I	ACTGG	6 cut(s)	58, 344, 430, 601, 621, 768
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	754
BseGI	GGATG	2 cut(s)	787, 845
BseLI	CCNNNNNNNGG	4 cut(s)	13, 171, 499, 623
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	499
BseNI	ACTGG	6 cut(s)	58, 344, 430, 601, 621, 768
BseRI	GAGGAG	2 cut(s)	55, 254
BseSI	GKGCMC	1 cut(s)	493
BseXI	GCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	491, 511, 723
BshNI	GGYRCC	2 cut(s)	275, 739
BsiEI	CGRYCG	1 cut(s)	271
BslI	CCNNNNNNNGG	4 cut(s)	13, 171, 499, 623
BsmAI	GTCTC	2 cut(s)	424, 802
BsmI	GAATGC	2 cut(s)	579, 682
BsnI	GGCC	3 cut(s)	491, 511, 723
Bso31I	GGTCTC	1 cut(s)	424
Bsp120I	GGGCCC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	493, 754
Bsp143I	GATC	4 cut(s)	268, 310, 446, 841
BspACI	CCGC	2 cut(s)	98, 156
BspANI	GGCC	3 cut(s)	491, 511, 723
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	277, 354, 491, 741
BspPI	GGATC	1 cut(s)	836
BspT107I	GGYRCC	2 cut(s)	275, 739
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	6 cut(s)	58, 344, 430, 601, 621, 768
BssECI	CCNNGG	1 cut(s)	754
BssMI	GATC	4 cut(s)	268, 310, 446, 841
BssNI	GRCGYC	3 cut(s)	222, 276, 282
Bst2UI	CCWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	3 cut(s)	222, 276, 282
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	303, 682, 721
BstDEI	CTNAG	2 cut(s)	8, 485
BstDSI	CCRYGG	1 cut(s)	754
BstEII	GGTNACC	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	787, 845
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	160, 278
BstKTI	GATC	4 cut(s)	271, 313, 449, 844
BstMAI	GTCTC	2 cut(s)	424, 802
BstMBI	GATC	4 cut(s)	268, 310, 446, 841
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	641
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	648
BstPI	GGTNACC	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	647
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	3 cut(s)	491, 511, 723
BtgI	CCRYGG	1 cut(s)	754
BtsCI	GGATG	2 cut(s)	787, 845
BtsIMutI	CAGTG	2 cut(s)	608, 628
Cac8I	GCNNGC	3 cut(s)	303, 682, 721
CaiI	CAGNNNCTG	1 cut(s)	641
CfoI	GCGC	2 cut(s)	160, 278
Cfr13I	GGNCC	3 cut(s)	295, 489, 490
CseI	GACGC	2 cut(s)	230, 290
CspCI	CAANNNNNGTGG	4 cut(s)	456, 491, 669, 704
CviAII	CATG	3 cut(s)	13, 507, 645
DdeI	CTNAG	2 cut(s)	8, 485
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	4 cut(s)	270, 312, 448, 843
DpnII	GATC	4 cut(s)	268, 310, 446, 841
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco147I	AGGCCT	1 cut(s)	723
Eco24I	GRGCYC	2 cut(s)	493, 754
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	489
EcoO65I	GGTNACC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	2 cut(s)	493, 754
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
FaeI	CATG	3 cut(s)	16, 510, 648
FaiI	YATR	6 cut(s)	14, 399, 500, 508, 646, 775
FatI	CATG	3 cut(s)	12, 506, 644
FauI	CCCGC	2 cut(s)	105, 163
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	2 cut(s)	794, 832
FriOI	GRGCYC	2 cut(s)	493, 754
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	2 cut(s)	159, 277
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	4 cut(s)	273, 327, 404, 604
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	491, 511, 723
HgaI	GACGC	2 cut(s)	230, 290
HhaI	GCGC	2 cut(s)	160, 278
Hin1I	GRCGYC	3 cut(s)	222, 276, 282
Hin1II	CATG	3 cut(s)	16, 510, 648
Hin6I	GCGC	2 cut(s)	158, 276
HinP1I	GCGC	2 cut(s)	158, 276
HinfI	GANTC	1 cut(s)	503
HphI	GGTGA	5 cut(s)	27, 60, 94, 638, 770
Hpy166II	GTNNAC	4 cut(s)	371, 457, 478, 761
Hpy188I	TCNGA	4 cut(s)	315, 572, 675, 866
Hpy188III	TCNNGA	7 cut(s)	248, 290, 421, 450, 712, 801, 829
Hpy8I	GTNNAC	4 cut(s)	371, 457, 478, 761
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	4 cut(s)	124, 129, 199, 568
HpyCH4V	TGCA	6 cut(s)	567, 610, 635, 644, 680, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	641
HpyF3I	CTNAG	2 cut(s)	8, 485
Hsp92I	GRCGYC	3 cut(s)	222, 276, 282
Hsp92II	CATG	3 cut(s)	16, 510, 648
HspAI	GCGC	2 cut(s)	158, 276
KasI	GGCGCC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	268, 310, 446, 841
LmnI	GCTCC	4 cut(s)	48, 241, 352, 388
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	3 cut(s)	241, 544, 576
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	33, 337, 652
MalI	GATC	4 cut(s)	270, 312, 448, 843
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	4 cut(s)	268, 310, 446, 841
MboII	GAAGA	3 cut(s)	15, 18, 797
MhlI	GDGCHC	2 cut(s)	493, 754
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	5 cut(s)	183, 661, 698, 768, 833
MluNI	TGGCCA	1 cut(s)	511
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	9 cut(s)	76, 81, 115, 232, 266, 286, 628, 681, 797
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	5 cut(s)	443, 575, 593, 665, 735
Msp20I	TGGCCA	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	2 cut(s)	579, 682
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	641
NarI	GGCGCC	1 cut(s)	276
NdeII	GATC	4 cut(s)	268, 310, 446, 841
NlaIII	CATG	3 cut(s)	16, 510, 648
NlaIV	GGNNCC	4 cut(s)	277, 354, 491, 741
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	648
PceI	AGGCCT	1 cut(s)	723
PctI	GAATGC	2 cut(s)	579, 682
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	637
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	1 cut(s)	511
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	29
PspEI	GGTNACC	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	4 cut(s)	277, 354, 491, 741
PspOMI	GGGCCC	1 cut(s)	489
PspPI	GGNCC	3 cut(s)	295, 489, 490
PstNI	CAGNNNCTG	1 cut(s)	641
PvuI	CGATCG	1 cut(s)	271
SaqAI	TTAA	5 cut(s)	443, 575, 593, 665, 735
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	4 cut(s)	268, 310, 446, 841
Sau96I	GGNCC	3 cut(s)	295, 489, 490
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	493, 754
SfaNI	GCATC	3 cut(s)	241, 544, 576
SfoI	GGCGCC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	233, 799
SmoI	CTYRAG	2 cut(s)	233, 799
SpeI	ACTAGT	1 cut(s)	79
Sse9I	AATT	5 cut(s)	183, 661, 698, 768, 833
SseBI	AGGCCT	1 cut(s)	723
SsiI	CCGC	2 cut(s)	98, 156
SspDI	GGCGCC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	723
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	7 cut(s)	249, 267, 271, 375, 561, 702, 853
TasI	AATT	5 cut(s)	183, 661, 698, 768, 833
Tru1I	TTAA	5 cut(s)	443, 575, 593, 665, 735
Tru9I	TTAA	5 cut(s)	443, 575, 593, 665, 735
TscAI	CASTG	2 cut(s)	608, 628
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	4 cut(s)	17, 80, 798, 814
TspRI	CASTG	2 cut(s)	608, 628
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	183, 698
XceI	RCATGY	1 cut(s)	648
XmiI	GTMKAC	1 cut(s)	370
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.