Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Forward (+)

43107429 .. 43111959

Gene Structure 4531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCATTATCTTCTTCCTGGTCGCCTACGCTCCTTACAACCACCCAGTTCTCCTCACCTCCCAAACTAGTCCATTCTCATTCCCCGCTCACCTCCTTGACCTTCCCTTCCAAACCCACCACCACCACCCACACCGTTGTTCCCGTGCTTTCCCACAAATGGAGGGCCAGAATTTCCTTCTTTCCTGCGTTTTTGAGCAAAGGCAAAGACGCCAAAACTCTCAAGGAGGAGCTTCTCGATGCCATTGCTTCGCTCGATCGAGGCGCTGACTCCACTCCAGAGGACCAGCTAGCTGTTGATCAGATTACACGCAAACTTGAAGCAGTTACTCCAGTAAAGGAGCCACTCAAATCTGGTCTACTCGATGGAAAATGGGAGCTTCTCTATACTACTTCAAAATCTATTCTCCAAACTGGGAGACCCAAGTTTTTAAGATCAAGAGTAAACTACCAAGCAATCAATGTGGACACACTCAGGGCCCAAAATATGGAGTCGTGGCCAACTTTCAATCAGGTAACAGCCGATTTAACACCTCTGAATGCAAGAAAAGTGGCTGTAAAATTCGACTATTTCAAGATTGCAGGCCTGATACCTGTTAAGGCACCTGACAGAGCCCGTGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGTGTCTCAAGAGGCGATAAAGGAAACCTGTTCATCTTGAAATTGGTTGATCCATCCTATCGAGTTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

242

Amino Acids

27.02

Weight (kDa)

9.61

Isoelectric Point (pI)

32.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	73 - 232	6.8e-35	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	601
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	171, 560
AcyI	GRCGYC	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	159, 487
AgsI	TTSAA	5 cut(s)	320, 396, 508, 574, 694
AhlI	ACTAGT	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	4 cut(s)	232, 289, 293, 379
AluI	AGCT	4 cut(s)	232, 289, 293, 379
Alw26I	GTCTC	2 cut(s)	412, 664
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	4 cut(s)	165, 477, 497, 583
ApaI	GGGCCC	1 cut(s)	481
ApoI	RAATTY	2 cut(s)	171, 560
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	4 cut(s)	165, 283, 477, 478
AsuHPI	GGTGA	3 cut(s)	48, 82, 632
AsuNHI	GCTAGC	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	601
BanII	GRGCYC	2 cut(s)	481, 616
BccI	CCATC	2 cut(s)	359, 715
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	19
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	412, 664
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	2 cut(s)	68, 290
BfoI	RGCGCY	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	4 cut(s)	165, 283, 477, 478
BmiI	GGNNCC	3 cut(s)	342, 479, 603
BmrFI	CCNGG	1 cut(s)	19
BmrI	ACTGGG	2 cut(s)	40, 423
BmsI	GCATC	1 cut(s)	229
BmtI	GCTAGC	1 cut(s)	293
BmuI	ACTGGG	2 cut(s)	40, 423
BpmI	CTGGAG	2 cut(s)	261, 315
BpuEI	CTTGAG	2 cut(s)	206, 646
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 487
Bse1I	ACTGG	4 cut(s)	46, 332, 418, 630
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	2 cut(s)	649, 707
BseLI	CCNNNNNNNGG	2 cut(s)	159, 487
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	487
BseNI	ACTGG	4 cut(s)	46, 332, 418, 630
BseRI	GAGGAG	2 cut(s)	43, 242
BseSI	GKGCMC	1 cut(s)	481
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	4 cut(s)	167, 479, 499, 585
BshNI	GGYRCC	1 cut(s)	601
BsiEI	CGRYCG	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	159, 487
BsmAI	GTCTC	2 cut(s)	412, 664
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	4 cut(s)	167, 479, 499, 585
Bso31I	GGTCTC	1 cut(s)	412
Bsp120I	GGGCCC	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	481, 616
Bsp143I	GATC	4 cut(s)	256, 298, 434, 703
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	4 cut(s)	167, 479, 499, 585
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	3 cut(s)	342, 479, 603
BspOI	GCTAGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	698
BspT107I	GGYRCC	1 cut(s)	601
BspTNI	GGTCTC	1 cut(s)	412
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	4 cut(s)	46, 332, 418, 630
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	4 cut(s)	256, 298, 434, 703
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	642
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	291, 583
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	649, 707
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	4 cut(s)	259, 301, 437, 706
BstMAI	GTCTC	2 cut(s)	412, 664
BstMBI	GATC	4 cut(s)	256, 298, 434, 703
BstMCI	CGRYCG	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	17
BstSLI	GKGCMC	1 cut(s)	481
BsuRI	GGCC	4 cut(s)	167, 479, 499, 585
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	2 cut(s)	649, 707
Cac8I	GCNNGC	2 cut(s)	291, 583
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	4 cut(s)	165, 283, 477, 478
CseI	GACGC	1 cut(s)	218
CspCI	CAANNNNNGTGG	4 cut(s)	444, 479, 531, 566
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	4 cut(s)	258, 300, 436, 705
DpnII	GATC	4 cut(s)	256, 298, 434, 703
EaeI	YGGCCR	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	585
Eco24I	GRGCYC	2 cut(s)	481, 616
Eco31I	GGTCTC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	17
EcoT38I	GRGCYC	2 cut(s)	481, 616
FaiI	YATR	3 cut(s)	387, 488, 637
FauI	CCCGC	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	358
FokI	GGATG	2 cut(s)	656, 694
FriOI	GRGCYC	2 cut(s)	481, 616
FspBI	CTAG	2 cut(s)	68, 290
GlaI	GCGC	1 cut(s)	265
GsuI	CTGGAG	2 cut(s)	261, 315
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	4 cut(s)	167, 479, 499, 585
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	2 cut(s)	269, 491
HphI	GGTGA	3 cut(s)	48, 82, 632
Hpy166II	GTNNAC	4 cut(s)	359, 445, 466, 623
Hpy188I	TCNGA	3 cut(s)	303, 537, 728
Hpy188III	TCNNGA	6 cut(s)	236, 278, 438, 574, 663, 691
Hpy8I	GTNNAC	4 cut(s)	359, 445, 466, 623
HpyAV	CCTTC	3 cut(s)	112, 117, 187
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	542, 581
HpyF3I	CTNAG	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	256, 298, 434, 703
LmnI	GCTCC	4 cut(s)	36, 229, 340, 376
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	68, 290
MaeIII	GTNAC	2 cut(s)	325, 514
MalI	GATC	4 cut(s)	258, 300, 436, 705
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	4 cut(s)	256, 298, 434, 703
MboII	GAAGA	3 cut(s)	3, 6, 659
MhlI	GDGCHC	2 cut(s)	481, 616
MlsI	TGGCCA	1 cut(s)	499
MluCI	AATT	4 cut(s)	171, 560, 630, 695
MluNI	TGGCCA	1 cut(s)	499
MlyI	GAGTC	2 cut(s)	263, 500
MnlI	CCTC	9 cut(s)	64, 69, 103, 156, 220, 254, 274, 543, 659
Mox20I	TGGCCA	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	499
MseI	TTAA	3 cut(s)	431, 527, 597
Msp20I	TGGCCA	1 cut(s)	499
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	256, 298, 434, 703
NheI	GCTAGC	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	342, 479, 603
PceI	AGGCCT	1 cut(s)	585
PctI	GAATGC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	487
Ple19I	CGATCG	1 cut(s)	259
PleI	GAGTC	2 cut(s)	263, 499
PpsI	GAGTC	2 cut(s)	263, 499
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	342, 479, 603
PspOMI	GGGCCC	1 cut(s)	477
PspPI	GGNCC	4 cut(s)	165, 283, 477, 478
PvuI	CGATCG	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	431, 527, 597
Sau3AI	GATC	4 cut(s)	256, 298, 434, 703
Sau96I	GGNCC	4 cut(s)	165, 283, 477, 478
SchI	GAGTC	2 cut(s)	263, 500
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	2 cut(s)	481, 616
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	2 cut(s)	221, 661
SmoI	CTYRAG	2 cut(s)	221, 661
SpeI	ACTAGT	1 cut(s)	67
Sse9I	AATT	4 cut(s)	171, 560, 630, 695
SseBI	AGGCCT	1 cut(s)	585
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	2 cut(s)	68, 290
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	6 cut(s)	237, 255, 259, 363, 564, 715
TasI	AATT	4 cut(s)	171, 560, 630, 695
Tru1I	TTAA	3 cut(s)	431, 527, 597
Tru9I	TTAA	3 cut(s)	431, 527, 597
TspDTI	ATGAA	2 cut(s)	660, 676
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	2 cut(s)	171, 560
XmiI	GTMKAC	1 cut(s)	358
XspI	CTAG	2 cut(s)	68, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.