Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Reverse (-)

24319947 .. 24324473

Gene Structure 4527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTACCTGAGCATGGCATTATCTTCTTCATGGTCACCTACGCTCCTTACAACCACCCAATCCTCCTCACCTCCCAAACTTGTCCATTCTCATTCCCCGCTCACCTCCTTGGCCTTCCCTTCCAAACCCACCACCACCACCCACACCATTGTTCCCGCGCTTTCCCACAAATGGAGAGCCAGAATTTCCTTCTTTCCTGCGTTTTTGAGCAAAGGCAAAGACATCAAAACTCTCAAGGAGGAGCTTCTCGATGCCATTGCTTCGCTCGATCGAGGCGCCGACGCCACTCCAGAGGACCAGCAAGCTGTTGATCAGATTACACGCAAACTTGAAGCAGTTACTCCAGTAAAGGAACCACTCAAATCTGGTCTACTCGATGGAAAATGGGAGCTTCTCTATACCACTTCAAAATCTATTCTCCAAACTGGGAGACCCAAGTTTTTAAGATCAAGAGTAAACTACCAAGCAATCAATGTGGACACACTCAGGGCCCAAAATATGGAGTCGTGGCCAACTTTCAATCAGGTAACAGCCGATTTAACACCTCTGAATGCAAGAAAGGTGGCTGTAAAATTCGACTATTTCAAGATTGCAGGCCTGATACCTGTTAAGGCACCTGACAGAGCCCGTGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGTGTCTCAAGAGGCGATAAAGGAAACCTGTTCATCTTGAAATTGGTTGATCCATCCTATCGAGTTCCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

247

Amino Acids

27.45

Weight (kDa)

9.59

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	77 - 236	3.4e-36	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	275, 613
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccBSI	CCGCTC	1 cut(s)	100
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	98, 156
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	2 cut(s)	183, 572
AcyI	GRCGYC	2 cut(s)	276, 282
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	13, 171, 499
AgsI	TTSAA	5 cut(s)	332, 408, 520, 586, 706
AluBI	AGCT	3 cut(s)	244, 305, 391
AluI	AGCT	3 cut(s)	244, 305, 391
Alw26I	GTCTC	2 cut(s)	424, 676
AlwI	GGATC	1 cut(s)	710
AoxI	GGCC	4 cut(s)	111, 489, 509, 595
ApaI	GGGCCC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	183, 572
AspLEI	GCGC	2 cut(s)	160, 278
AspS9I	GGNCC	3 cut(s)	295, 489, 490
AsuHPI	GGTGA	4 cut(s)	27, 60, 94, 644
AvaII	GGWCC	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	511
BanI	GGYRCC	2 cut(s)	275, 613
BanII	GRGCYC	2 cut(s)	493, 628
BccI	CCATC	2 cut(s)	371, 727
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	424, 676
BfoI	RGCGCY	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	295, 489, 490
BmiI	GGNNCC	4 cut(s)	277, 354, 491, 615
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	435
BpmI	CTGGAG	2 cut(s)	273, 327
Bpu10I	CCTNAGC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	218, 658
BsaHI	GRCGYC	2 cut(s)	276, 282
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	108, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 171, 499
Bse1I	ACTGG	3 cut(s)	344, 430, 642
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	108, 628
BseGI	GGATG	2 cut(s)	661, 719
BseLI	CCNNNNNNNGG	3 cut(s)	13, 171, 499
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	499
BseNI	ACTGG	3 cut(s)	344, 430, 642
BseRI	GAGGAG	2 cut(s)	55, 254
BseSI	GKGCMC	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	4 cut(s)	113, 491, 511, 597
BshNI	GGYRCC	2 cut(s)	275, 613
BsiEI	CGRYCG	1 cut(s)	271
BslI	CCNNNNNNNGG	3 cut(s)	13, 171, 499
BsmAI	GTCTC	2 cut(s)	424, 676
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	4 cut(s)	113, 491, 511, 597
Bso31I	GGTCTC	1 cut(s)	424
Bsp120I	GGGCCC	1 cut(s)	489
Bsp1286I	GDGCHC	2 cut(s)	493, 628
Bsp143I	GATC	4 cut(s)	268, 310, 446, 715
BspACI	CCGC	2 cut(s)	98, 156
BspANI	GGCC	4 cut(s)	113, 491, 511, 597
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	277, 354, 491, 615
BspPI	GGATC	1 cut(s)	710
BspT107I	GGYRCC	2 cut(s)	275, 613
BspTNI	GGTCTC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	344, 430, 642
BssECI	CCNNGG	2 cut(s)	108, 628
BssMI	GATC	4 cut(s)	268, 310, 446, 715
BssNI	GRCGYC	2 cut(s)	276, 282
BssT1I	CCWWGG	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	2 cut(s)	276, 282
BstC8I	GCNNGC	2 cut(s)	303, 595
BstDEI	CTNAG	2 cut(s)	8, 485
BstDSI	CCRYGG	1 cut(s)	628
BstEII	GGTNACC	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	661, 719
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	2 cut(s)	160, 278
BstKTI	GATC	4 cut(s)	271, 313, 449, 718
BstMAI	GTCTC	2 cut(s)	424, 676
BstMBI	GATC	4 cut(s)	268, 310, 446, 715
BstMCI	CGRYCG	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	493
BstUI	CGCG	1 cut(s)	158
BsuRI	GGCC	4 cut(s)	113, 491, 511, 597
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	2 cut(s)	661, 719
Cac8I	GCNNGC	2 cut(s)	303, 595
CfoI	GCGC	2 cut(s)	160, 278
Cfr13I	GGNCC	3 cut(s)	295, 489, 490
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	4 cut(s)	456, 491, 543, 578
CviAII	CATG	2 cut(s)	13, 30
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	8, 485
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	4 cut(s)	270, 312, 448, 717
DpnII	GATC	4 cut(s)	268, 310, 446, 715
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	597
Eco24I	GRGCYC	2 cut(s)	493, 628
Eco31I	GGTCTC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	489
EcoO65I	GGTNACC	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	493, 628
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	16, 33
FaiI	YATR	5 cut(s)	14, 31, 399, 500, 649
FatI	CATG	2 cut(s)	12, 29
FauI	CCCGC	2 cut(s)	105, 163
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	370
FokI	GGATG	2 cut(s)	668, 706
FriOI	GRGCYC	2 cut(s)	493, 628
GlaI	GCGC	2 cut(s)	159, 277
GsuI	CTGGAG	2 cut(s)	273, 327
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	4 cut(s)	113, 491, 511, 597
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	160, 278
Hin1I	GRCGYC	2 cut(s)	276, 282
Hin1II	CATG	2 cut(s)	16, 33
Hin6I	GCGC	2 cut(s)	158, 276
HinP1I	GCGC	2 cut(s)	158, 276
HinfI	GANTC	1 cut(s)	503
HphI	GGTGA	4 cut(s)	27, 60, 94, 644
Hpy166II	GTNNAC	4 cut(s)	371, 457, 478, 635
Hpy188I	TCNGA	3 cut(s)	315, 549, 740
Hpy188III	TCNNGA	6 cut(s)	248, 290, 450, 586, 675, 703
Hpy8I	GTNNAC	4 cut(s)	371, 457, 478, 635
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	124, 129, 199
HpyCH4V	TGCA	2 cut(s)	554, 593
HpyF3I	CTNAG	2 cut(s)	8, 485
Hsp92I	GRCGYC	2 cut(s)	276, 282
Hsp92II	CATG	2 cut(s)	16, 33
HspAI	GCGC	2 cut(s)	158, 276
KasI	GGCGCC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	268, 310, 446, 715
LmnI	GCTCC	3 cut(s)	48, 241, 388
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	3 cut(s)	33, 337, 526
MalI	GATC	4 cut(s)	270, 312, 448, 717
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	4 cut(s)	268, 310, 446, 715
MboII	GAAGA	3 cut(s)	15, 18, 671
MhlI	GDGCHC	2 cut(s)	493, 628
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	4 cut(s)	183, 572, 642, 707
MluNI	TGGCCA	1 cut(s)	511
Mly113I	GGCGCC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	9 cut(s)	73, 76, 81, 115, 232, 266, 286, 555, 671
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	3 cut(s)	443, 539, 609
Msp20I	TGGCCA	1 cut(s)	511
Mva1269I	GAATGC	1 cut(s)	556
MvnI	CGCG	1 cut(s)	158
NarI	GGCGCC	1 cut(s)	276
NdeII	GATC	4 cut(s)	268, 310, 446, 715
NlaIII	CATG	2 cut(s)	16, 33
NlaIV	GGNNCC	4 cut(s)	277, 354, 491, 615
NmuCI	GTSAC	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	597
PctI	GAATGC	1 cut(s)	556
PflMI	CCANNNNNTGG	1 cut(s)	499
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	1 cut(s)	511
PluTI	GGCGCC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	511
PspEI	GGTNACC	1 cut(s)	33
PspN4I	GGNNCC	4 cut(s)	277, 354, 491, 615
PspOMI	GGGCCC	1 cut(s)	489
PspPI	GGNCC	3 cut(s)	295, 489, 490
PvuI	CGATCG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	443, 539, 609
Sau3AI	GATC	4 cut(s)	268, 310, 446, 715
Sau96I	GGNCC	3 cut(s)	295, 489, 490
SchI	GAGTC	1 cut(s)	512
SduI	GDGCHC	2 cut(s)	493, 628
SfaNI	GCATC	1 cut(s)	241
SfoI	GGCGCC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	2 cut(s)	233, 673
SmoI	CTYRAG	2 cut(s)	233, 673
Sse9I	AATT	4 cut(s)	183, 572, 642, 707
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	2 cut(s)	98, 156
SspDI	GGCGCC	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	6 cut(s)	249, 267, 271, 375, 576, 727
TasI	AATT	4 cut(s)	183, 572, 642, 707
Tru1I	TTAA	3 cut(s)	443, 539, 609
Tru9I	TTAA	3 cut(s)	443, 539, 609
TseFI	GTSAC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	3 cut(s)	18, 672, 688
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	183, 572
XmiI	GTMKAC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.