Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Forward (+)

9528774 .. 9530582

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTTTACCTTGGTGCTTAAAGACTGGAGTTTTAACGTCTCCGGCCGCCGGATTTAATCATCCATCGGACAGTGGCTTCGCCGTTCCGACGAAGTTACTGAGTATTCGAAAAGGTGATCGGGAAAGATTGAGAATCCAAGCTGTTTTCAGCTTTCCTCCAAGAAACGGTGGAGCCGAGAAGCGGAAACAGCTCAAACATGAACTTGTCGAAGCCATTGAGCCTCTTGAACGTGGTGCCACTGCCTCGCCTGATGATCAGCTTCTGATTGATCAGTTAGCACGTAAGGTGGAAGCAGTAAACCCAACCAAGGAGCCTCTGAAGTCTGATTTGATCAATGGGAAATGGGAGCTCATTTACACAACATCTGCTGCGATTTTGCAAGCAAAGAAACCAAGGTTCTTAAGATCGTTAACTAACTACCAATGTATCAATATGGATACACTAAAGGTGCAAAGAATGGAGACTTGGCCTTTCTATAACTCGGTAACTGGAGACTTGACACCCCTCAACTCGAAGACGGTTGCTGTGAAACTTCAAGTGTTTAAAATTCTCGGCTTTATTCCGGTAAAAGCACCTGATGGTACTGCACGCGGTGAACTAGAGATTACCTATGTGGACGAGGAACTACGGATATCAAGGGGCAAAGGCAACTTGTTGTTTATATTGAAGATGTTTGATCCCACTTATCGAATCCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

234

Amino Acids

26.25

Weight (kDa)

9.56

Isoelectric Point (pI)

28.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	63 - 183	4e-29	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	1 cut(s)	594
AciI	CCGC	3 cut(s)	48, 184, 594
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	341
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	4 cut(s)	50, 167, 183, 310
AflII	CTTAAG	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	230, 539, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AluBI	AGCT	5 cut(s)	143, 153, 193, 262, 352
AluI	AGCT	5 cut(s)	143, 153, 193, 262, 352
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	3 cut(s)	45, 458, 489
AlwI	GGATC	1 cut(s)	674
AlwNI	CAGNNNCTG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	45, 470
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	549
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AsuHPI	GGTGA	2 cut(s)	128, 608
AsuII	TTCGAA	1 cut(s)	109
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	2 cut(s)	73, 575
BceAI	ACGGC	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	433
BclI	TGATCA	3 cut(s)	256, 271, 333
BcoDI	GTCTC	3 cut(s)	45, 458, 489
BfaI	CTAG	1 cut(s)	602
BfrI	CTTAAG	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	433
BisI	GCNGC	2 cut(s)	48, 372
BlsI	GCNGC	2 cut(s)	49, 373
BmiI	GGNNCC	3 cut(s)	175, 238, 315
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	2 cut(s)	48, 513
Bpu14I	TTCGAA	1 cut(s)	109
BsaAI	YACGTR	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	11, 309, 395
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 167, 183, 310
Bse1I	ACTGG	2 cut(s)	31, 496
BseDI	CCNNGG	3 cut(s)	11, 309, 395
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	4 cut(s)	50, 167, 183, 310
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	31, 496
BseX3I	CGGCCG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	2 cut(s)	47, 472
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	3 cut(s)	44, 51, 566
BslI	CCNNNNNNNGG	4 cut(s)	50, 167, 183, 310
BsmAI	GTCTC	3 cut(s)	45, 458, 489
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	47, 472
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
BspACI	CCGC	3 cut(s)	48, 184, 594
BspANI	GGCC	2 cut(s)	47, 472
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	3 cut(s)	175, 238, 315
BspPI	GGATC	1 cut(s)	674
BspT104I	TTCGAA	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	403
BsrI	ACTGG	2 cut(s)	31, 496
BssECI	CCNNGG	3 cut(s)	11, 309, 395
BssMI	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
BssT1I	CCWWGG	3 cut(s)	11, 309, 395
Bst4CI	ACNGT	3 cut(s)	74, 170, 523
BstAFI	CTTAAG	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	384, 592
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	6 cut(s)	121, 259, 274, 336, 410, 682
BstMAI	GTCTC	3 cut(s)	45, 458, 489
BstMBI	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	358
BstV2I	GAAGAC	1 cut(s)	524
BstZI	CGGCCG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	2 cut(s)	47, 472
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	79, 240
Cac8I	GCNNGC	2 cut(s)	384, 592
CaiI	CAGNNNCTG	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	1 cut(s)	200
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	6 cut(s)	120, 258, 273, 335, 409, 681
DpnII	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
DraI	TTTAAA	1 cut(s)	547
DraIII	CACNNNGTG	1 cut(s)	596
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	352
EclXI	CGGCCG	1 cut(s)	45
Eco130I	CCWWGG	3 cut(s)	11, 309, 395
Eco24I	GRGCYC	1 cut(s)	354
Eco32I	GATATC	1 cut(s)	636
Eco52I	CGGCCG	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	636
EcoT14I	CCWWGG	3 cut(s)	11, 309, 395
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	3 cut(s)	11, 309, 395
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	203
FaiI	YATR	5 cut(s)	201, 437, 480, 615, 665
FatI	CATG	1 cut(s)	199
FbaI	TGATCA	3 cut(s)	256, 271, 333
Fnu4HI	GCNGC	2 cut(s)	48, 372
FokI	GGATG	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	48, 372
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	2 cut(s)	48, 372
GsuI	CTGGAG	2 cut(s)	48, 513
HaeIII	GGCC	2 cut(s)	47, 472
HapII	CCGG	3 cut(s)	44, 51, 566
Hin1II	CATG	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HinfI	GANTC	2 cut(s)	135, 693
HpaI	GTTAAC	1 cut(s)	414
HpaII	CCGG	3 cut(s)	44, 51, 566
HphI	GGTGA	2 cut(s)	128, 608
Hpy166II	GTNNAC	4 cut(s)	301, 414, 599, 619
Hpy188I	TCNGA	6 cut(s)	70, 90, 267, 321, 328, 704
Hpy188III	TCNNGA	2 cut(s)	122, 227
Hpy8I	GTNNAC	4 cut(s)	301, 414, 599, 619
Hpy99I	CGWCG	1 cut(s)	94
HpyCH4III	ACNGT	3 cut(s)	74, 170, 523
HpyCH4IV	ACGT	3 cut(s)	38, 232, 283
HpyCH4V	TGCA	3 cut(s)	382, 454, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	3 cut(s)	38, 232, 283
Hsp92II	CATG	1 cut(s)	203
Ksp22I	TGATCA	3 cut(s)	256, 271, 333
KspAI	GTTAAC	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
LmnI	GCTCC	3 cut(s)	173, 313, 349
LpnPI	CCDG	7 cut(s)	12, 57, 64, 264, 477, 579, 591
Lsp1109I	GCAGC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	3 cut(s)	38, 232, 283
MaeIII	GTNAC	2 cut(s)	96, 487
MalI	GATC	6 cut(s)	120, 258, 273, 335, 409, 681
MboI	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
MboII	GAAGA	2 cut(s)	529, 682
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	168, 234, 256, 327, 518, 616
MseI	TTAA	6 cut(s)	20, 35, 57, 404, 413, 546
MspCI	CTTAAG	1 cut(s)	403
MspI	CCGG	3 cut(s)	44, 51, 566
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	3 cut(s)	175, 238, 315
NmeAIII	GCCGAG	2 cut(s)	202, 534
NspV	TTCGAA	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	135, 693
PkrI	GCNGC	2 cut(s)	49, 373
Ppu21I	YACGTR	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	354
PspN4I	GGNNCC	3 cut(s)	175, 238, 315
PstNI	CAGNNNCTG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	6 cut(s)	20, 35, 57, 404, 413, 546
SatI	GCNGC	2 cut(s)	48, 372
Sau3AI	GATC	6 cut(s)	118, 256, 271, 333, 407, 679
SduI	GDGCHC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	1 cut(s)	549
SsiI	CCGC	3 cut(s)	48, 184, 594
SspMI	CTAG	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	354
StyI	CCWWGG	3 cut(s)	11, 309, 395
TaaI	ACNGT	3 cut(s)	74, 170, 523
TaiI	ACGT	3 cut(s)	41, 235, 286
TaqI	TCGA	4 cut(s)	109, 210, 515, 691
TasI	AATT	1 cut(s)	549
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	135, 693
Tru1I	TTAA	6 cut(s)	20, 35, 57, 404, 413, 546
Tru9I	TTAA	6 cut(s)	20, 35, 57, 404, 413, 546
TscAI	CASTG	2 cut(s)	79, 247
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	1 cut(s)	646
TspRI	CASTG	2 cut(s)	79, 247
Vha464I	CTTAAG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	549
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.