Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005370

Physical Location & Seq

Genomic Coordinates Forward (+)

44532906 .. 44535987

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19957

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCATTATCTTCTGCTTGGTCACCTACGCTCCTTACAACCACCCAATCCTCCTCACCTCCCAAACTAGTCCATTCTCATTCCCCGCTCACCTCCTTGACCTTCCCTTCCAAACCCACCACCACCACCCACACCATTGTTCCCGCGCTTTCCCACAAATGGAGAGCCAGAATTTCCTTCTTTCCTGCGTTTTCGAGCAAAGGCAAAGACGCCAAAACTCTCAAGGTGGAGCTTCTCGATGCCATTGCTTCGCTCGATCGAGGCGCCGGCGCCGGCGTTTCCTATCCTCTGCTTTTCGTAATTTTAGGAAGCTTATTCCCAAGAAAACGGTTAACCGTTGAATGGGATTATCTATGTGGGAAACGTTGCAAATGGAGGCTTTTAGCACATAATAGTTACTCCCGTAAAGGAGCCACTCAAATCTGGTCTACTCGATGGAAAATGGGAGCTTCTCTACACTACTTCAAAATCTCTTCTCCAAACTGGGTTTCTTTTAGACCCAAGTTTTTAAGATCGAGAGTGAACTACCAAGCAATCAATGTGGACACTCTCAGGGCCCAAAATATGGAGTCGTGGCCAACTTTCAATCAGGTAACAGCCGATTTAATACCTCTGAATGCAAGAAAAGTGGCTGTAAAATTTGACTATTTCAAGATTGCAGGCCTGGTAAGTTTGTTATTGATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

229

Amino Acids

25.76

Weight (kDa)

10.43

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26070 AT3G26080 AT3G26080
fragaria_vesca	FvH4_5g29660 FvH4_5g29660
malus_domestica	MD15G1421400.v1.1 MD15G1421500.v1.1
prunus_persica	Prupe.1G566700_v2.0.a1 Prupe.1G566700_v2.0.a1
pyrus_communis	pycom15g37360 pycom15g37370
rosa_chinensis	RchiOBHm_Chr7g0222921 RchiOBHm_Chr7g0222941
rosa_laevigata	RLG00000002012 RLG00000002013
rosa_multiflora	Rmu_sc0000774.1_g000024 Rmu_sc0000774.1_g000025 Rmu_sc0000774.1_g000026
rosa_roxburghii	Rroxscaffold_3G00236410 Rroxscaffold_3G00236430
rosa_rugosa	Rorug07G0212300
rosa_samantha	Rh7AG357300 Rh7BG345200 Rh7BG345300 Rh7CG375400 Rh7DG352000 Rh7DG352100
rosa_wichuraiana	Rw7G030380 Rw7G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	263, 269
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	86, 144
AclI	AACGTT	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	171, 638
AcyI	GRCGYC	3 cut(s)	210, 264, 270
AfiI	CCNNNNNNNGG	3 cut(s)	159, 342, 565
AgsI	TTSAA	4 cut(s)	341, 466, 586, 652
AhlI	ACTAGT	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	663
AjuI	GAANNNNNNNTTGG	2 cut(s)	472, 504
AluBI	AGCT	3 cut(s)	232, 312, 449
AluI	AGCT	3 cut(s)	232, 312, 449
AoxI	GGCC	3 cut(s)	555, 575, 661
ApaI	GGGCCC	1 cut(s)	559
ApoI	RAATTY	2 cut(s)	171, 638
AspLEI	GCGC	3 cut(s)	148, 266, 272
AspS9I	GGNCC	2 cut(s)	555, 556
AsuHPI	GGTGA	3 cut(s)	15, 48, 82
BaeGI	GKGCMC	1 cut(s)	559
BalI	TGGCCA	1 cut(s)	577
BanI	GGYRCC	2 cut(s)	263, 269
BanII	GRGCYC	1 cut(s)	559
BccI	CCATC	1 cut(s)	429
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	665
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	2 cut(s)	267, 273
Bme1390I	CCNGG	1 cut(s)	665
BmgT120I	GGNCC	2 cut(s)	555, 556
BmiI	GGNNCC	4 cut(s)	265, 271, 412, 557
BmrFI	CCNGG	1 cut(s)	665
BmrI	ACTGGG	1 cut(s)	493
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	206
BsaHI	GRCGYC	3 cut(s)	210, 264, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 342, 565
Bse118I	RCCGGY	2 cut(s)	266, 272
Bse1I	ACTGG	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	665
BseLI	CCNNNNNNNGG	3 cut(s)	159, 342, 565
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	565
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	1 cut(s)	43
BseSI	GKGCMC	1 cut(s)	559
Bsh1236I	CGCG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	3 cut(s)	557, 577, 663
BshNI	GGYRCC	2 cut(s)	263, 269
BsiEI	CGRYCG	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	267, 273
BslI	CCNNNNNNNGG	3 cut(s)	159, 342, 565
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	557, 577, 663
Bsp120I	GGGCCC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp143I	GATC	2 cut(s)	256, 512
BspACI	CCGC	2 cut(s)	86, 144
BspANI	GGCC	3 cut(s)	557, 577, 663
BspCNI	CTCAG	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	4 cut(s)	265, 271, 412, 557
BspT107I	GGYRCC	2 cut(s)	263, 269
BsrBI	CCGCTC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	266, 272
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	2 cut(s)	266, 272
BssMI	GATC	2 cut(s)	256, 512
BssNI	GRCGYC	3 cut(s)	210, 264, 270
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	330, 337
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	3 cut(s)	210, 264, 270
BstC8I	GCNNGC	3 cut(s)	268, 274, 661
BstDEI	CTNAG	1 cut(s)	551
BstEII	GGTNACC	1 cut(s)	21
BstFNI	CGCG	1 cut(s)	146
BstH2I	RGCGCY	2 cut(s)	267, 273
BstHHI	GCGC	3 cut(s)	148, 266, 272
BstKTI	GATC	2 cut(s)	259, 515
BstMBI	GATC	2 cut(s)	256, 512
BstMCI	CGRYCG	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	559
BstUI	CGCG	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	557, 577, 663
Cac8I	GCNNGC	3 cut(s)	268, 274, 661
CfoI	GCGC	3 cut(s)	148, 266, 272
Cfr10I	RCCGGY	2 cut(s)	266, 272
Cfr13I	GGNCC	2 cut(s)	555, 556
CseI	GACGC	1 cut(s)	218
CspCI	CAANNNNNGTGG	4 cut(s)	522, 557, 609, 644
DdeI	CTNAG	1 cut(s)	551
DinI	GGCGCC	2 cut(s)	265, 271
DpnI	GATC	2 cut(s)	258, 514
DpnII	GATC	2 cut(s)	256, 512
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	559
Eco91I	GGTNACC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	555
EcoO65I	GGTNACC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	663
EcoT38I	GRGCYC	1 cut(s)	559
EgeI	GGCGCC	2 cut(s)	265, 271
EheI	GGCGCC	2 cut(s)	265, 271
FaiI	YATR	4 cut(s)	355, 390, 566, 685
FauI	CCCGC	2 cut(s)	93, 151
FblI	GTMKAC	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	559
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	3 cut(s)	147, 265, 271
HaeII	RGCGCY	2 cut(s)	267, 273
HaeIII	GGCC	3 cut(s)	557, 577, 663
HapII	CCGG	2 cut(s)	267, 273
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	3 cut(s)	148, 266, 272
Hin1I	GRCGYC	3 cut(s)	210, 264, 270
Hin6I	GCGC	3 cut(s)	146, 264, 270
HinP1I	GCGC	3 cut(s)	146, 264, 270
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	1 cut(s)	569
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	2 cut(s)	267, 273
HphI	GGTGA	3 cut(s)	15, 48, 82
Hpy166II	GTNNAC	4 cut(s)	333, 429, 523, 544
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	3 cut(s)	236, 516, 652
Hpy8I	GTNNAC	4 cut(s)	333, 429, 523, 544
HpyAV	CCTTC	3 cut(s)	112, 117, 187
HpyCH4III	ACNGT	2 cut(s)	330, 337
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	369, 620, 659
HpyF3I	CTNAG	1 cut(s)	551
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	3 cut(s)	210, 264, 270
HspAI	GCGC	3 cut(s)	146, 264, 270
KasI	GGCGCC	2 cut(s)	263, 269
KroI	GCCGGC	2 cut(s)	266, 272
KroNI	GCCGGC	2 cut(s)	268, 274
KspAI	GTTAAC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	256, 512
LmnI	GCTCC	4 cut(s)	36, 229, 410, 446
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	3 cut(s)	21, 395, 592
MalI	GATC	2 cut(s)	258, 514
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	256, 512
MboII	GAAGA	2 cut(s)	3, 465
MhlI	GDGCHC	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	577
MluCI	AATT	3 cut(s)	171, 300, 638
MluNI	TGGCCA	1 cut(s)	577
Mly113I	GGCGCC	2 cut(s)	264, 270
MlyI	GAGTC	1 cut(s)	578
MnlI	CCTC	8 cut(s)	61, 64, 69, 103, 254, 297, 369, 621
Mox20I	TGGCCA	1 cut(s)	577
MreI	CGCCGGCG	2 cut(s)	266, 272
MroNI	GCCGGC	2 cut(s)	266, 272
MscI	TGGCCA	1 cut(s)	577
MseI	TTAA	3 cut(s)	332, 509, 605
Msp20I	TGGCCA	1 cut(s)	577
MspI	CCGG	2 cut(s)	267, 273
MspR9I	CCNGG	1 cut(s)	665
Mva1269I	GAATGC	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	146
NaeI	GCCGGC	2 cut(s)	268, 274
NarI	GGCGCC	2 cut(s)	264, 270
NdeII	GATC	2 cut(s)	256, 512
NgoMIV	GCCGGC	2 cut(s)	266, 272
NlaIV	GGNNCC	4 cut(s)	265, 271, 412, 557
NmuCI	GTSAC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	622
PdiI	GCCGGC	2 cut(s)	268, 274
PflMI	CCANNNNNTGG	1 cut(s)	565
Ple19I	CGATCG	1 cut(s)	259
PleI	GAGTC	1 cut(s)	577
PluTI	GGCGCC	2 cut(s)	267, 273
PpsI	GAGTC	1 cut(s)	577
Psp1406I	AACGTT	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	663
PspEI	GGTNACC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	4 cut(s)	265, 271, 412, 557
PspOMI	GGGCCC	1 cut(s)	555
PspPI	GGNCC	2 cut(s)	555, 556
PvuI	CGATCG	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	332, 509, 605
Sau3AI	GATC	2 cut(s)	256, 512
Sau96I	GGNCC	2 cut(s)	555, 556
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	665
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	229
SfoI	GGCGCC	2 cut(s)	265, 271
SgrAI	CRCCGGYG	2 cut(s)	266, 272
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	67
Sse9I	AATT	3 cut(s)	171, 300, 638
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	2 cut(s)	86, 144
SspDI	GGCGCC	2 cut(s)	263, 269
SspMI	CTAG	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	330, 337
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	6 cut(s)	194, 237, 255, 259, 433, 515
TasI	AATT	3 cut(s)	171, 300, 638
Tru1I	TTAA	3 cut(s)	332, 509, 605
Tru9I	TTAA	3 cut(s)	332, 509, 605
TseFI	GTSAC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	21
Van91I	CCANNNNNTGG	1 cut(s)	565
XapI	RAATTY	2 cut(s)	171, 638
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.