Rh7BG345200

plastid-lipid-associated protein 4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005370
Physical Location & Seq
Forward (+)
36076619 .. 36080496
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG345200.1

Sequence Viewer

Length: 741 bp
ATGAACCTGAGCATGGCATTATCTTCTTCTTGGTCACCTACGCTCCTTACAACCACCCAATCCTCCTCACCTCCCAAACTTGTCCATTCTCATTCCCCGCTCACCTCCTTGACCTTCCCTTCCAAACCCATCACCACCACCCACACCATTGTTCCCGCGCTTTCCCACAAATGGAGAGCCAGAATTTCCTTCTTTCCTGCGTTTTTGAGCAAAGGCAAAGACGCCAAAACTCTCAAGGAGGAGCTTCTCGATGCCATTGCTTCGCTCGATCGAGGCGCCGACGCCACTCCAGAGGACCAGCAAGCTGTTGATCAGATTGCACGCAAACTTGAAGCAGTTACTCCAGTAAAGGAGCCACTCAAATCTGGTCTACTCGATGGAAAATGGGAGCTTCTCTACACTACTTCAAAATCTCTTCTCCAAACTGGGAGACCCAAGTTTTTAAGATCGAGAGTAAACTACCAAGCAATCAATGTGGACACTCTCAGGGCCCAAAATATGGAATCGTGGCCAACTTTCAATCAGGTAACAGCTGATTTAATACCTCTGAATGCAAGAAAAGTGGCTGTAAAATTCGACTATTTCAAGATTGCAGGCCTGATACCTGTTAAGGCGCCTGACAGAGCCCCTGGTGAACTGGAAATTACATATTTGGATGAAGAGTTGCGTGTCTCAAGAGGTGATAAAGGAAACCTGTTCATCTTGAAATTGGTTGATCCATCCTATCGAGTTCCTGTCTGA

Protein Analysis

246

Amino Acids

27.32

Weight (kDa)

9.52

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 77 - 236 5.5e-36 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 275, 613
AccB7I CCANNNNNTGG 1 cut(s) 499
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 370
AccII CGCG 1 cut(s) 158
AciI CCGC 2 cut(s) 98, 156
AclWI GGATC 1 cut(s) 710
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 2 cut(s) 183, 572
AcyI GRCGYC 4 cut(s) 222, 276, 282, 614
AfiI CCNNNNNNNGG 3 cut(s) 13, 171, 499
AgsI TTSAA 5 cut(s) 332, 408, 520, 586, 706
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 4 cut(s) 244, 305, 391, 533
AluI AGCT 4 cut(s) 244, 305, 391, 533
Alw26I GTCTC 2 cut(s) 424, 676
AlwI GGATC 1 cut(s) 710
AoxI GGCC 3 cut(s) 489, 509, 595
ApaI GGGCCC 1 cut(s) 493
ApoI RAATTY 2 cut(s) 183, 572
AspLEI GCGC 3 cut(s) 160, 278, 616
AspS9I GGNCC 3 cut(s) 295, 489, 490
AsuHPI GGTGA 6 cut(s) 27, 60, 94, 124, 644, 692
AvaII GGWCC 1 cut(s) 295
BaeGI GKGCMC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 511
BanI GGYRCC 2 cut(s) 275, 613
BanII GRGCYC 2 cut(s) 493, 628
BccI CCATC 3 cut(s) 137, 371, 727
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 630
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 424, 676
BfoI RGCGCY 2 cut(s) 279, 617
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 3 cut(s) 295, 489, 490
BmiI GGNNCC 4 cut(s) 277, 354, 491, 615
BmrFI CCNGG 1 cut(s) 630
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 435
BpmI CTGGAG 2 cut(s) 273, 327
Bpu10I CCTNAGC 1 cut(s) 8
BpuEI CTTGAG 2 cut(s) 218, 658
BsaHI GRCGYC 4 cut(s) 222, 276, 282, 614
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 628
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 171, 499
Bse1I ACTGG 3 cut(s) 344, 430, 642
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 628
BseGI GGATG 2 cut(s) 661, 719
BseLI CCNNNNNNNGG 3 cut(s) 13, 171, 499
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 499
BseNI ACTGG 3 cut(s) 344, 430, 642
BseRI GAGGAG 2 cut(s) 55, 254
BseSI GKGCMC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 491, 511, 597
BshNI GGYRCC 2 cut(s) 275, 613
BsiEI CGRYCG 1 cut(s) 271
BslI CCNNNNNNNGG 3 cut(s) 13, 171, 499
BsmAI GTCTC 2 cut(s) 424, 676
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 3 cut(s) 491, 511, 597
Bso31I GGTCTC 1 cut(s) 424
Bsp120I GGGCCC 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 493, 628
Bsp143I GATC 4 cut(s) 268, 310, 446, 715
BspACI CCGC 2 cut(s) 98, 156
BspANI GGCC 3 cut(s) 491, 511, 597
BspCNI CTCAG 1 cut(s) 498
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 4 cut(s) 277, 354, 491, 615
BspPI GGATC 1 cut(s) 710
BspT107I GGYRCC 2 cut(s) 275, 613
BspTNI GGTCTC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 3 cut(s) 344, 430, 642
BssECI CCNNGG 1 cut(s) 628
BssMI GATC 4 cut(s) 268, 310, 446, 715
BssNI GRCGYC 4 cut(s) 222, 276, 282, 614
Bst2UI CCWGG 1 cut(s) 630
Bst6I CTCTTC 2 cut(s) 420, 654
BstACI GRCGYC 4 cut(s) 222, 276, 282, 614
BstC8I GCNNGC 3 cut(s) 303, 322, 595
BstDEI CTNAG 2 cut(s) 8, 485
BstEII GGTNACC 1 cut(s) 33
BstF5I GGATG 2 cut(s) 661, 719
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 2 cut(s) 279, 617
BstHHI GCGC 3 cut(s) 160, 278, 616
BstKTI GATC 4 cut(s) 271, 313, 449, 718
BstMAI GTCTC 2 cut(s) 424, 676
BstMBI GATC 4 cut(s) 268, 310, 446, 715
BstMCI CGRYCG 1 cut(s) 271
BstNI CCWGG 1 cut(s) 630
BstPI GGTNACC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 628
BstSLI GKGCMC 1 cut(s) 493
BstUI CGCG 1 cut(s) 158
BsuRI GGCC 3 cut(s) 491, 511, 597
BtsCI GGATG 2 cut(s) 661, 719
Cac8I GCNNGC 3 cut(s) 303, 322, 595
CfoI GCGC 3 cut(s) 160, 278, 616
Cfr13I GGNCC 3 cut(s) 295, 489, 490
CseI GACGC 2 cut(s) 230, 290
CspCI CAANNNNNGTGG 4 cut(s) 456, 491, 543, 578
CviAII CATG 1 cut(s) 13
DdeI CTNAG 2 cut(s) 8, 485
DinI GGCGCC 2 cut(s) 277, 615
DpnI GATC 4 cut(s) 270, 312, 448, 717
DpnII GATC 4 cut(s) 268, 310, 446, 715
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 2 cut(s) 420, 654
EarI CTCTTC 2 cut(s) 420, 654
Eco147I AGGCCT 1 cut(s) 597
Eco24I GRGCYC 2 cut(s) 493, 628
Eco31I GGTCTC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 295
Eco91I GGTNACC 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 489
EcoO65I GGTNACC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 493, 628
EgeI GGCGCC 2 cut(s) 277, 615
EheI GGCGCC 2 cut(s) 277, 615
FaeI CATG 1 cut(s) 16
FaiI YATR 3 cut(s) 14, 500, 649
FatI CATG 1 cut(s) 12
FauI CCCGC 2 cut(s) 105, 163
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 1 cut(s) 370
FokI GGATG 2 cut(s) 668, 706
FriOI GRGCYC 2 cut(s) 493, 628
GlaI GCGC 3 cut(s) 159, 277, 615
GsuI CTGGAG 2 cut(s) 273, 327
HaeII RGCGCY 2 cut(s) 279, 617
HaeIII GGCC 3 cut(s) 491, 511, 597
HgaI GACGC 2 cut(s) 230, 290
HhaI GCGC 3 cut(s) 160, 278, 616
Hin1I GRCGYC 4 cut(s) 222, 276, 282, 614
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 3 cut(s) 158, 276, 614
HinP1I GCGC 3 cut(s) 158, 276, 614
HinfI GANTC 1 cut(s) 503
HphI GGTGA 6 cut(s) 27, 60, 94, 124, 644, 692
Hpy166II GTNNAC 4 cut(s) 371, 457, 478, 635
Hpy188I TCNGA 3 cut(s) 315, 549, 740
Hpy188III TCNNGA 6 cut(s) 248, 290, 450, 586, 675, 703
Hpy8I GTNNAC 4 cut(s) 371, 457, 478, 635
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 124, 129, 199
HpyCH4V TGCA 3 cut(s) 320, 554, 593
HpyF3I CTNAG 2 cut(s) 8, 485
Hsp92I GRCGYC 4 cut(s) 222, 276, 282, 614
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 3 cut(s) 158, 276, 614
KasI GGCGCC 2 cut(s) 275, 613
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 4 cut(s) 268, 310, 446, 715
LmnI GCTCC 4 cut(s) 48, 241, 352, 388
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 33, 337, 526
MalI GATC 4 cut(s) 270, 312, 448, 717
MbiI CCGCTC 1 cut(s) 100
MboI GATC 4 cut(s) 268, 310, 446, 715
MboII GAAGA 4 cut(s) 15, 18, 407, 671
MhlI GDGCHC 2 cut(s) 493, 628
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 4 cut(s) 183, 572, 642, 707
MluNI TGGCCA 1 cut(s) 511
Mly113I GGCGCC 2 cut(s) 276, 614
MnlI CCTC 9 cut(s) 73, 76, 81, 115, 232, 266, 286, 555, 671
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 3 cut(s) 443, 539, 609
Msp20I TGGCCA 1 cut(s) 511
MspA1I CMGCKG 1 cut(s) 533
MspR9I CCNGG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 158
NarI GGCGCC 2 cut(s) 276, 614
NdeII GATC 4 cut(s) 268, 310, 446, 715
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 4 cut(s) 277, 354, 491, 615
NmuCI GTSAC 1 cut(s) 33
PceI AGGCCT 1 cut(s) 597
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 499
Ple19I CGATCG 1 cut(s) 271
PluTI GGCGCC 2 cut(s) 279, 617
Psp6I CCWGG 1 cut(s) 628
PspEI GGTNACC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 4 cut(s) 277, 354, 491, 615
PspOMI GGGCCC 1 cut(s) 489
PspPI GGNCC 3 cut(s) 295, 489, 490
PvuI CGATCG 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 533
SaqAI TTAA 3 cut(s) 443, 539, 609
Sau3AI GATC 4 cut(s) 268, 310, 446, 715
Sau96I GGNCC 3 cut(s) 295, 489, 490
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 2 cut(s) 493, 628
SfaNI GCATC 1 cut(s) 241
SfoI GGCGCC 2 cut(s) 277, 615
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 2 cut(s) 233, 673
SmoI CTYRAG 2 cut(s) 233, 673
Sse9I AATT 4 cut(s) 183, 572, 642, 707
SseBI AGGCCT 1 cut(s) 597
SsiI CCGC 2 cut(s) 98, 156
SspDI GGCGCC 2 cut(s) 275, 613
StuI AGGCCT 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 628
TaqI TCGA 7 cut(s) 249, 267, 271, 375, 449, 576, 727
TasI AATT 4 cut(s) 183, 572, 642, 707
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 3 cut(s) 443, 539, 609
Tru9I TTAA 3 cut(s) 443, 539, 609
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 3 cut(s) 17, 672, 688
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 2 cut(s) 183, 572
XmiI GTMKAC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.