Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

9843460 .. 9845176

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTGGAGGTCATTCGCAAGAAGCTTCAAACTCATTAATGTACCAAATGGTTTGATATCCAAGCCAATTCGCTCTACTCTCCTCTATTCAACTTCTTCAAGAAAGTTAGAAGGAAAAGTAGCGGTCATAACCGGCGGGGCAAGCGGAATAGGGAAGGCCACAGCGGAGGAATTTGTGAGCCAAGGTGCGCAAGTGATTATCGTAGATATAGATGAAGAGGCTGGTCATATGGTCGCGACCGAACTTGGCTCAGCCGCACATTTCTTAAGATGTGATGTCACTGAGGAGGAACAAATCGCTAAGGCCGTGGAGACCGCCGTGACTCGTCATGGGAAGCTCGACGTAATGCTCAATAGTGCGGGAATATCATGCTCCATATCACCACCAAGCATAGCGGACCTAGACATGGACACTTACGACAAAGTGATGCGTCTCAACGTGCGAGGTACTGTCTTAGGGATAAAGCACGCGGCTCGAGCCATGATCCCCGCTGGCTCGGGCTCCATCCTCTGCCTCTCTAGCATCAGCGGCTTGATGGGTGGTCTAGGCCCACACGCATACTCAATCTCTAAATTCACAATCCCGGGTGTGGTCAAGACGGTTGCGAGCGAGCTGTGTAAGCACGGACTAAGAATCAATTGTATATCGCCCGCAGGCATCCCGACGCCTCTAACTTTGAGGATGTTTCGAGAGGCGTTTGCGGGTCATAGCATTCGGGAGGAACAACTTTTGGCGATTGTGAACGCGACGGGAGAACTAAAGGGAGAGAAGTGTGAGGAGATAGATGTGGCTAAAGCGGCTTTGTATTTGGCATCGGATGATGCTAAGTTTGTGACGGGGCATAACCTTGTTGTTGATGGTGGATTTACTTGTTTCAAGTCTCTTAATCTCCCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

300

Amino Acids

31.7

Weight (kDa)

7.07

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	39 - 225	1.3e-48	short chain dehydrogenase
KR	PF08659	42 - 190	1.9e-12	KR domain
adh_short_C2	PF13561	47 - 290	1.4e-56	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AccII	CGCG	3 cut(s)	236, 470, 746
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	170, 572
AcyI	GRCGYC	1 cut(s)	665
AfaI	GTAC	2 cut(s)	42, 448
AfiI	CCNNNNNNNGG	2 cut(s)	406, 589
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	4 cut(s)	28, 90, 99, 877
AluBI	AGCT	3 cut(s)	24, 337, 613
AluI	AGCT	3 cut(s)	24, 337, 613
Alw26I	GTCTC	3 cut(s)	305, 437, 885
AlwI	GGATC	1 cut(s)	478
Ama87I	CYCGRG	3 cut(s)	474, 496, 583
AoxI	GGCC	3 cut(s)	156, 303, 547
ApoI	RAATTY	2 cut(s)	170, 572
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	397, 548
AsuC2I	CCSGG	2 cut(s)	584, 585
AsuHPI	GGTGA	1 cut(s)	372
AvaI	CYCGRG	3 cut(s)	474, 496, 583
AvaII	GGWCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	503
BccI	CCATC	3 cut(s)	512, 529, 851
BceAI	ACGGC	2 cut(s)	290, 302
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BcnI	CCSGG	2 cut(s)	584, 585
BcoDI	GTCTC	3 cut(s)	305, 437, 885
BfaI	CTAG	3 cut(s)	401, 519, 545
BfrI	CTTAAG	1 cut(s)	265
BisI	GCNGC	4 cut(s)	255, 471, 529, 798
BlpI	GCTNAGC	1 cut(s)	250
BlsI	GCNGC	4 cut(s)	256, 472, 530, 799
Bme1390I	CCNGG	2 cut(s)	584, 585
Bme18I	GGWCC	1 cut(s)	397
BmeT110I	CYCGRG	3 cut(s)	474, 496, 583
BmgT120I	GGNCC	2 cut(s)	397, 548
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	2 cut(s)	584, 585
BmsI	GCATC	5 cut(s)	417, 531, 666, 811, 821
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	250
BpuMI	CCSGG	2 cut(s)	584, 585
BsaHI	GRCGYC	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	3 cut(s)	181, 306, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 589
Bse118I	RCCGGY	1 cut(s)	131
BseDI	CCNNGG	3 cut(s)	181, 306, 583
BseGI	GGATG	4 cut(s)	504, 657, 687, 823
BseLI	CCNNNNNNNGG	2 cut(s)	406, 589
BseMII	CTCAG	2 cut(s)	264, 273
BseRI	GAGGAG	3 cut(s)	71, 299, 791
Bsh1236I	CGCG	3 cut(s)	236, 470, 746
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	158, 305, 549
BsiEI	CGRYCG	1 cut(s)	240
BsiHKCI	CYCGRG	3 cut(s)	474, 496, 583
BsiSI	CCGG	2 cut(s)	132, 584
BslI	CCNNNNNNNGG	2 cut(s)	406, 589
BsmAI	GTCTC	3 cut(s)	305, 437, 885
BsmBI	CGTCTC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	3 cut(s)	158, 305, 549
Bso31I	GGTCTC	1 cut(s)	305
BsoBI	CYCGRG	3 cut(s)	474, 496, 583
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	1 cut(s)	483
Bsp1720I	GCTNAGC	1 cut(s)	250
Bsp68I	TCGCGA	1 cut(s)	236
BspANI	GGCC	3 cut(s)	158, 305, 549
BspCNI	CTCAG	2 cut(s)	263, 274
BspFNI	CGCG	3 cut(s)	236, 470, 746
BspLI	GGNNCC	1 cut(s)	502
BspPI	GGATC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	181, 306, 583
BssMI	GATC	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	665
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	451, 601
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	665
BstAFI	CTTAAG	1 cut(s)	265
BstC8I	GCNNGC	7 cut(s)	142, 468, 493, 607, 611, 651, 655
BstDEI	CTNAG	6 cut(s)	250, 282, 300, 454, 629, 825
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	4 cut(s)	504, 657, 687, 823
BstFNI	CGCG	3 cut(s)	236, 470, 746
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	3 cut(s)	305, 437, 885
BstMBI	GATC	1 cut(s)	483
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	6 cut(s)	141, 476, 519, 528, 619, 797
BstSCI	CCNGG	2 cut(s)	582, 583
BstUI	CGCG	3 cut(s)	236, 470, 746
BsuRI	GGCC	3 cut(s)	158, 305, 549
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	504, 657, 687, 823
BtsIMutI	CAGTG	1 cut(s)	279
BtuMI	TCGCGA	1 cut(s)	236
Cac8I	GCNNGC	7 cut(s)	142, 468, 493, 607, 611, 651, 655
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	397, 548
Cfr9I	CCCGGG	1 cut(s)	583
CseI	GACGC	2 cut(s)	419, 673
Csp6I	GTAC	2 cut(s)	41, 447
CviAII	CATG	4 cut(s)	329, 369, 406, 481
CviQI	GTAC	2 cut(s)	41, 447
DdeI	CTNAG	6 cut(s)	250, 282, 300, 454, 629, 825
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	305
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	397
Eco88I	CYCGRG	3 cut(s)	474, 496, 583
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	4 cut(s)	332, 372, 409, 484
FatI	CATG	4 cut(s)	328, 368, 405, 480
FauI	CCCGC	5 cut(s)	128, 352, 496, 658, 694
FauNDI	CATATG	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	255, 471, 529, 798
FokI	GGATG	4 cut(s)	491, 644, 694, 830
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	4 cut(s)	255, 471, 529, 798
FspBI	CTAG	3 cut(s)	401, 519, 545
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	4 cut(s)	255, 471, 529, 798
HaeIII	GGCC	3 cut(s)	158, 305, 549
HapII	CCGG	2 cut(s)	132, 584
HgaI	GACGC	2 cut(s)	419, 673
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	4 cut(s)	332, 372, 409, 484
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	2 cut(s)	322, 633
HpaII	CCGG	2 cut(s)	132, 584
HphI	GGTGA	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	1 cut(s)	817
Hpy188III	TCNNGA	6 cut(s)	99, 235, 595, 661, 689, 716
Hpy8I	GTNNAC	1 cut(s)	742
Hpy99I	CGWCG	3 cut(s)	344, 667, 751
HpyAV	CCTTC	3 cut(s)	104, 148, 903
HpyCH4III	ACNGT	2 cut(s)	451, 601
HpyCH4IV	ACGT	2 cut(s)	342, 438
HpyF10VI	GCNNNNNNNGC	6 cut(s)	141, 476, 519, 528, 619, 797
HpyF3I	CTNAG	6 cut(s)	250, 282, 300, 454, 629, 825
HpySE526I	ACGT	2 cut(s)	342, 438
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	4 cut(s)	332, 372, 409, 484
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	377, 506
LpnPI	CCDG	5 cut(s)	145, 207, 477, 597, 639
LweI	GCATC	5 cut(s)	417, 531, 666, 811, 821
MaeI	CTAG	3 cut(s)	401, 519, 545
MaeII	ACGT	2 cut(s)	342, 438
MaeIII	GTNAC	3 cut(s)	277, 319, 832
MalI	GATC	1 cut(s)	485
MboI	GATC	1 cut(s)	483
MboII	GAAGA	2 cut(s)	87, 227
MfeI	CAATTG	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	4 cut(s)	66, 170, 572, 637
MlyI	GAGTC	1 cut(s)	316
MseI	TTAA	4 cut(s)	36, 266, 885, 901
MspA1I	CMGCKG	3 cut(s)	164, 491, 528
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	2 cut(s)	132, 584
MspR9I	CCNGG	2 cut(s)	584, 585
MunI	CAATTG	1 cut(s)	637
Mva1269I	GAATGC	1 cut(s)	711
MvnI	CGCG	3 cut(s)	236, 470, 746
MwoI	GCNNNNNNNGC	6 cut(s)	141, 476, 519, 528, 619, 797
NciI	CCSGG	2 cut(s)	584, 585
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	1 cut(s)	483
NlaIII	CATG	4 cut(s)	332, 372, 409, 484
NlaIV	GGNNCC	1 cut(s)	502
NmuCI	GTSAC	3 cut(s)	277, 319, 832
NruI	TCGCGA	1 cut(s)	236
NsbI	TGCGCA	1 cut(s)	189
PaeR7I	CTCGAG	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	633
PkrI	GCNGC	4 cut(s)	256, 472, 530, 799
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PshBI	ATTAAT	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	397, 548
PspXI	VCTCGAGB	1 cut(s)	474
RruI	TCGCGA	1 cut(s)	236
RsaI	GTAC	2 cut(s)	42, 448
RsaNI	GTAC	2 cut(s)	41, 447
SaqAI	TTAA	4 cut(s)	36, 266, 885, 901
SatI	GCNGC	4 cut(s)	255, 471, 529, 798
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	2 cut(s)	397, 548
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	2 cut(s)	584, 585
SduI	GDGCHC	1 cut(s)	503
SfaNI	GCATC	5 cut(s)	417, 531, 666, 811, 821
Sfr274I	CTCGAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	474
SmaI	CCCGGG	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	265, 474
SmoI	CTYRAG	2 cut(s)	265, 474
Sse9I	AATT	4 cut(s)	66, 170, 572, 637
SspMI	CTAG	3 cut(s)	401, 519, 545
StyD4I	CCNGG	2 cut(s)	582, 583
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	451, 601
TaiI	ACGT	2 cut(s)	345, 441
TaqI	TCGA	3 cut(s)	339, 475, 688
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	4 cut(s)	66, 170, 572, 637
TauI	GCSGC	4 cut(s)	257, 473, 531, 800
TfiI	GAWTC	1 cut(s)	633
Tru1I	TTAA	4 cut(s)	36, 266, 885, 901
Tru9I	TTAA	4 cut(s)	36, 266, 885, 901
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	3 cut(s)	277, 319, 832
Tsp45I	GTSAC	3 cut(s)	277, 319, 832
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	639
TspMI	CCCGGG	1 cut(s)	583
TspRI	CASTG	1 cut(s)	286
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	2 cut(s)	170, 572
XhoI	CTCGAG	1 cut(s)	474
XmaI	CCCGGG	1 cut(s)	583
XspI	CTAG	3 cut(s)	401, 519, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.