Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Reverse (-)

14648157 .. 14649348

Gene Structure 1192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTCGGGGTTGGATTAAGAAAACATGTTACCTTTACAAGAGCTTTGGTTTCTCCAAGCTGCTTCAAGATGGGGTATTCATCCCAGAGTGGAAGACTTGAAGGAAAGGTGGCACTGATTACAGGAGCAGCAAGTGGTATAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGTGCCAAGGTTGTTCTTGCAGATATTCAACACCAGCTTGGCCAAGATGCAGCAAAGGAGCTTGGTCCTAATGCCAGCTTCATTGCCTGTGATGTCACAAAAGAATCCGACATTTCCAATGCTGTAGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGCACAGCAATGCAGGTGTAGCTTGTAAATCTCCTCCAAGCATTGTGGACCTTGACCTGGCAGTGTTTGATCGTGTCATGAACATTAACGTGCGAGGAGTCCTGGCAGGAATTAAGCACGCTTCTCGTGTGATGATCCCGCGCAAAACTGGCTCAATTCTCTGCACAGCCAGCGTCACAGGACTAATGGGAGGACTAGCACAGCACACCTATTCTCTGTCCAAGTTTGCTGTAATAGGCATTGTCAAGTCTCTGGCTGCAGAGCTACGCCAGCATGGGATCCGGGTCAATTGCATATCCCCATTCGCCATTCCAACCCCATTTGTAATCGAAGAAATGAGTCGGATTTACCCAGGAGCTGATGAAGAGAAGTTAATTGAAATTATACATCGCTCTGGGGCCCTAGAAGGAGCAAACTGTGAACCCAATGACATTGCCAATGCTGCACTTTACCTAGCTTCAGATGATGCTAAATATGTTAGTGGCCATAATTTGGTTGTAGATGGAGGTTTTACATCTTTCAAGACTTTTAGTTTCCCTGCACCAGATCAGGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

31.52

Weight (kDa)

8.18

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	36 - 222	4.4e-50	short chain dehydrogenase
KR	PF08659	38 - 211	6.3e-09	KR domain
adh_short_C2	PF13561	42 - 284	2.2e-60	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	829
AccII	CGCG	1 cut(s)	478
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	3 cut(s)	466, 610, 623
AcoI	YGGCCR	2 cut(s)	214, 820
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	780
AfiI	CCNNNNNNNGG	2 cut(s)	394, 829
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	5 cut(s)	67, 101, 203, 716, 859
AjnI	CCWGG	3 cut(s)	393, 438, 688
Alw26I	GTCTC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	466, 610, 623
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	214, 735, 820
ApaI	GGGCCC	1 cut(s)	739
ApeKI	GCWGC	5 cut(s)	60, 128, 224, 593, 779
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	4 cut(s)	239, 385, 735, 736
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	239, 385
BaeGI	GKGCMC	1 cut(s)	739
BalI	TGGCCA	2 cut(s)	216, 822
BamHI	GGATCC	1 cut(s)	615
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	739
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	100
BbvI	GCAGC	5 cut(s)	47, 140, 236, 580, 766
BccI	CCATC	3 cut(s)	64, 317, 833
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	3 cut(s)	395, 440, 690
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	3 cut(s)	533, 740, 791
BfmI	CTRYAG	2 cut(s)	297, 594
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
BlsI	GCNGC	5 cut(s)	62, 130, 226, 595, 781
Bme1390I	CCNGG	4 cut(s)	395, 440, 620, 690
Bme18I	GGWCC	2 cut(s)	239, 385
BmgT120I	GGNCC	4 cut(s)	239, 385, 735, 736
BmiI	GGNNCC	4 cut(s)	178, 617, 736, 737
BmrFI	CCNGG	4 cut(s)	395, 440, 620, 690
BmsI	GCATC	3 cut(s)	164, 211, 793
BpiI	GAAGAC	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	180, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 829
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	4 cut(s)	178, 255, 352, 768
BseBI	CCWGG	3 cut(s)	395, 440, 690
BseDI	CCNNGG	2 cut(s)	180, 688
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	394, 829
BseMI	GCAATG	4 cut(s)	178, 255, 352, 768
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	2 cut(s)	360, 447
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	5 cut(s)	47, 140, 236, 580, 766
BsgI	GTGCAG	3 cut(s)	484, 765, 861
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	3 cut(s)	216, 737, 822
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	619
BslI	CCNNNNNNNGG	2 cut(s)	394, 829
BsmAI	GTCTC	1 cut(s)	591
BsnI	GGCC	3 cut(s)	216, 737, 822
Bsp120I	GGGCCC	1 cut(s)	735
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	4 cut(s)	406, 471, 615, 883
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	3 cut(s)	216, 737, 822
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	4 cut(s)	178, 617, 736, 737
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	466, 610, 623
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	4 cut(s)	178, 255, 352, 768
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	2 cut(s)	180, 688
BssMI	GATC	4 cut(s)	406, 471, 615, 883
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	3 cut(s)	395, 440, 690
Bst4CI	ACNGT	1 cut(s)	755
Bst6I	CTCTTC	1 cut(s)	696
BstC8I	GCNNGC	5 cut(s)	250, 326, 456, 508, 608
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	4 cut(s)	409, 474, 618, 886
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	4 cut(s)	406, 471, 615, 883
BstMWI	GCNNNNNNNGC	6 cut(s)	325, 356, 486, 507, 607, 779
BstNI	CCWGG	3 cut(s)	395, 440, 690
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	4 cut(s)	393, 438, 618, 688
BstSFI	CTRYAG	2 cut(s)	297, 594
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	5 cut(s)	47, 140, 236, 580, 766
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	3 cut(s)	216, 737, 822
BtgZI	GCGATG	1 cut(s)	710
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	113, 405
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	5 cut(s)	250, 326, 456, 508, 608
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	4 cut(s)	239, 385, 735, 736
CseI	GACGC	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	3 cut(s)	26, 415, 611
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	4 cut(s)	408, 473, 617, 885
DpnII	GATC	4 cut(s)	406, 471, 615, 883
EaeI	YGGCCR	2 cut(s)	214, 820
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	2 cut(s)	239, 385
Eco57I	CTGAAG	1 cut(s)	780
EcoO109I	RGGNCCY	2 cut(s)	735, 736
EcoRII	CCWGG	3 cut(s)	393, 438, 688
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	739
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	29, 418, 614
FaiI	YATR	9 cut(s)	27, 140, 338, 416, 612, 632, 722, 813, 825
FatI	CATG	3 cut(s)	25, 414, 610
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	739
Fsp4HI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
FspBI	CTAG	3 cut(s)	533, 740, 791
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
HaeIII	GGCC	3 cut(s)	216, 737, 822
HapII	CCGG	1 cut(s)	619
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	29, 418, 614
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HinfI	GANTC	3 cut(s)	278, 435, 676
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	385, 758
Hpy188I	TCNGA	3 cut(s)	283, 681, 799
Hpy188III	TCNNGA	3 cut(s)	67, 415, 859
Hpy8I	GTNNAC	2 cut(s)	385, 758
HpyAV	CCTTC	2 cut(s)	95, 737
HpyCH4III	ACNGT	1 cut(s)	755
HpyCH4IV	ACGT	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	6 cut(s)	325, 356, 486, 507, 607, 779
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	29, 418, 614
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	406, 471, 615, 883
LmnI	GCTCC	4 cut(s)	125, 232, 692, 746
Lsp1109I	GCAGC	5 cut(s)	47, 140, 236, 580, 766
LweI	GCATC	3 cut(s)	164, 211, 793
MaeI	CTAG	3 cut(s)	533, 740, 791
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	28, 268, 511
MalI	GATC	4 cut(s)	408, 473, 617, 885
MboI	GATC	4 cut(s)	406, 471, 615, 883
MboII	GAAGA	3 cut(s)	105, 680, 713
MfeI	CAATTG	1 cut(s)	625
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	739
MlsI	TGGCCA	2 cut(s)	216, 822
MluCI	AATT	7 cut(s)	161, 447, 492, 625, 711, 717, 826
MluNI	TGGCCA	2 cut(s)	216, 822
MlyI	GAGTC	2 cut(s)	444, 685
MmeI	TCCRAC	3 cut(s)	306, 659, 674
MnlI	CCTC	4 cut(s)	381, 425, 521, 836
Mox20I	TGGCCA	2 cut(s)	216, 822
MscI	TGGCCA	2 cut(s)	216, 822
MseI	TTAA	5 cut(s)	17, 423, 450, 710, 895
MslI	CAYNNNNRTG	2 cut(s)	345, 425
Msp20I	TGGCCA	2 cut(s)	216, 822
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	4 cut(s)	395, 440, 620, 690
MunI	CAATTG	1 cut(s)	625
MvaI	CCWGG	3 cut(s)	395, 440, 690
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	6 cut(s)	325, 356, 486, 507, 607, 779
NciI	CCSGG	1 cut(s)	620
NdeII	GATC	4 cut(s)	406, 471, 615, 883
NlaIII	CATG	3 cut(s)	29, 418, 614
NlaIV	GGNNCC	4 cut(s)	178, 617, 736, 737
NmuCI	GTSAC	2 cut(s)	268, 511
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	1 cut(s)	414
PaqCI	CACCTGC	1 cut(s)	341
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	829
PkrI	GCNGC	5 cut(s)	62, 130, 226, 595, 781
PleI	GAGTC	2 cut(s)	443, 684
PpsI	GAGTC	2 cut(s)	443, 684
PscI	ACATGT	1 cut(s)	25
Psp6I	CCWGG	3 cut(s)	393, 438, 688
PspGI	CCWGG	3 cut(s)	393, 438, 688
PspN4I	GGNNCC	4 cut(s)	178, 617, 736, 737
PspOMI	GGGCCC	1 cut(s)	735
PspPI	GGNCC	4 cut(s)	239, 385, 735, 736
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	615
RseI	CAYNNNNRTG	2 cut(s)	345, 425
SaqAI	TTAA	5 cut(s)	17, 423, 450, 710, 895
SatI	GCNGC	5 cut(s)	61, 129, 225, 594, 780
Sau3AI	GATC	4 cut(s)	406, 471, 615, 883
Sau96I	GGNCC	4 cut(s)	239, 385, 735, 736
SchI	GAGTC	2 cut(s)	444, 685
ScrFI	CCNGG	4 cut(s)	395, 440, 620, 690
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	3 cut(s)	164, 211, 793
SfcI	CTRYAG	2 cut(s)	297, 594
SinI	GGWCC	2 cut(s)	239, 385
SmiMI	CAYNNNNRTG	2 cut(s)	345, 425
Sse9I	AATT	7 cut(s)	161, 447, 492, 625, 711, 717, 826
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	3 cut(s)	533, 740, 791
StyD4I	CCNGG	4 cut(s)	393, 438, 618, 688
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	755
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	666
TasI	AATT	7 cut(s)	161, 447, 492, 625, 711, 717, 826
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	5 cut(s)	17, 423, 450, 710, 895
Tru9I	TTAA	5 cut(s)	17, 423, 450, 710, 895
TscAI	CASTG	2 cut(s)	120, 405
TseFI	GTSAC	2 cut(s)	268, 511
TseI	GCWGC	5 cut(s)	60, 128, 224, 593, 779
Tsp45I	GTSAC	2 cut(s)	268, 511
TspDTI	ATGAA	5 cut(s)	69, 154, 244, 431, 714
TspRI	CASTG	2 cut(s)	120, 405
Van91I	CCANNNNNTGG	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	239, 385
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	3 cut(s)	533, 740, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.