Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

78051151 .. 78052852

Gene Structure 1702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTTTGTGGACAAGATCACTGTACCAAAGGAATATGTGGTTTGGCATGGATAGAAACCATAGTACTTTTCCGATTAGACATCGATTCAATCAAACTAGAGCTGGTGGTTTTATTATTCTGACCAAAAAAATGGAGACTAAACCTAGAACGTGGAACTCGCAGGTGGTTTATTATTCTAAATCCTTTTTGATTCCTTCTTCTCACCTCATAATCAGACTTGAAGGCAAGGTGGCACTAATTACTGGAGCAGCAAGTGGCCTAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGTGCCAAGGTTGTTCTTGCAGATATCGAACACCAGCTTGGGCAAGACGCGGCAAAGGAGCTTGGTCCTAATGCCAGCTTCATTGCCTGTGATGTCACAAAAGAATCCGACATTTCCAATGCTCTTGATATTATGTACAGAAATACAGGTGTAGCTTGTAACTCTCCTCCAAGCATTGTGGACCTTGACCTGGCAGTGTTTGATCGGGTCCACGCTTCGCATGTGATGATCCCTCACAAAACTGGCTCAATTCTCTGCACACCCAGCATCGCAGGACTAACGGGAGGATCTCTGGCTGCAGAGCTATGCCAGCATAGGATCCGGGTCAATTGCATATCCCCATTTGGCATTCCAACCCCAATGGTAATCAAAGAAATGAGTCGGATTTATCCAGGAGCTGATGTAGAGAGGCTAATCAAAATTTTATATCACTTTGGCGCCTTGGAAGGAGCAAACTGTGAACCCAATGACATTGCCAATGCTGCACTTTATCTAGCTTCAGATGATGCTAAGTATGTTAGTAGGCATAATATGGTTGTAGATGGAGGCTTTACATCTGTCAAGATTTCGAAGGTCCCTGCACCAGATCAGGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

298

Amino Acids

32.51

Weight (kDa)

8.98

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	77 - 143	6.2e-14	short chain dehydrogenase
adh_short_C2	PF13561	83 - 169	7.4e-10	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	196 - 284	9.7e-15	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	154
Acc36I	ACCTGC	1 cut(s)	154
AccB1I	GGYRCC	2 cut(s)	299, 734
AccII	CGCG	1 cut(s)	347
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	4 cut(s)	520, 592, 610, 623
AcsI	RAATTY	2 cut(s)	284, 717
AcuI	CTGAAG	1 cut(s)	780
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	3 cut(s)	26, 67, 434
AfiI	CCNNNNNNNGG	2 cut(s)	268, 487
AgsI	TTSAA	2 cut(s)	91, 224
AjnI	CCWGG	2 cut(s)	486, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	8 cut(s)	104, 334, 358, 375, 452, 601, 695, 794
AluI	AGCT	8 cut(s)	104, 334, 358, 375, 452, 601, 695, 794
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	4 cut(s)	520, 592, 610, 623
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	3 cut(s)	251, 593, 779
ApoI	RAATTY	2 cut(s)	284, 717
AspA2I	CCTAGG	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	4 cut(s)	362, 478, 505, 871
AsuC2I	CCSGG	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	197
AsuII	TTCGAA	1 cut(s)	866
AvaII	GGWCC	4 cut(s)	362, 478, 505, 871
AvrII	CCTAGG	1 cut(s)	262
BamHI	GGATCC	1 cut(s)	615
BanI	GGYRCC	2 cut(s)	299, 734
BbvI	GCAGC	3 cut(s)	263, 580, 766
BccI	CCATC	1 cut(s)	833
BciT130I	CCWGG	2 cut(s)	488, 690
BcnI	CCSGG	1 cut(s)	620
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	4 cut(s)	99, 147, 263, 791
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	738
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	4 cut(s)	252, 348, 594, 780
BlnI	CCTAGG	1 cut(s)	262
BlsI	GCNGC	4 cut(s)	253, 349, 595, 781
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	3 cut(s)	488, 620, 690
Bme18I	GGWCC	4 cut(s)	362, 478, 505, 871
BmgT120I	GGNCC	4 cut(s)	362, 478, 505, 871
BmiI	GGNNCC	5 cut(s)	301, 506, 617, 736, 873
BmrFI	CCNGG	3 cut(s)	488, 620, 690
BmsI	GCATC	3 cut(s)	287, 573, 793
BpmI	CTGGAG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	866
BpuMI	CCSGG	1 cut(s)	620
Bsa29I	ATCGAT	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	262, 303, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 487
Bse1I	ACTGG	2 cut(s)	250, 544
Bse3DI	GCAATG	3 cut(s)	301, 378, 768
BseBI	CCWGG	2 cut(s)	488, 690
BseCI	ATCGAT	1 cut(s)	85
BseDI	CCNNGG	3 cut(s)	262, 303, 738
BseLI	CCNNNNNNNGG	2 cut(s)	268, 487
BseMI	GCAATG	3 cut(s)	301, 378, 768
BseNI	ACTGG	2 cut(s)	250, 544
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	3 cut(s)	263, 580, 766
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	3 cut(s)	538, 765, 861
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	2 cut(s)	299, 734
BshVI	ATCGAT	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	619
BslFI	GGGAC	1 cut(s)	857
BslI	CCNNNNNNNGG	2 cut(s)	268, 487
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	857
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	261
Bsp119I	TTCGAA	1 cut(s)	866
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	5 cut(s)	301, 506, 617, 736, 873
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	154
BspPI	GGATC	4 cut(s)	520, 592, 610, 623
BspT104I	TTCGAA	1 cut(s)	866
BspT107I	GGYRCC	2 cut(s)	299, 734
BsrDI	GCAATG	3 cut(s)	301, 378, 768
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	2 cut(s)	250, 544
BssECI	CCNNGG	3 cut(s)	262, 303, 738
BssMI	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
BssNI	GRCGYC	1 cut(s)	735
BssT1I	CCWWGG	3 cut(s)	262, 303, 738
Bst2UI	CCWGG	2 cut(s)	488, 690
Bst4CI	ACNGT	2 cut(s)	24, 755
BstACI	GRCGYC	1 cut(s)	735
BstAUI	TGTACA	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	373, 608
BstDEI	CTNAG	1 cut(s)	807
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstFNI	CGCG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	6 cut(s)	20, 502, 528, 587, 618, 886
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	561, 607, 779
BstNI	CCWGG	2 cut(s)	488, 690
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	3 cut(s)	486, 618, 688
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	263, 580, 766
BstX2I	RGATCY	2 cut(s)	584, 615
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	584, 615
Bsu15I	ATCGAT	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	2 cut(s)	20, 498
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	373, 608
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	4 cut(s)	362, 478, 505, 871
ClaI	ATCGAT	1 cut(s)	85
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	3 cut(s)	25, 66, 433
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	2 cut(s)	49, 518
CviQI	GTAC	3 cut(s)	25, 66, 433
DdeI	CTNAG	1 cut(s)	807
DinI	GGCGCC	1 cut(s)	736
DpnI	GATC	6 cut(s)	19, 501, 527, 586, 617, 885
DpnII	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
Eco130I	CCWWGG	3 cut(s)	262, 303, 738
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	4 cut(s)	362, 478, 505, 871
Eco57I	CTGAAG	1 cut(s)	780
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	871
EcoRII	CCWGG	2 cut(s)	486, 688
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	3 cut(s)	262, 303, 738
EgeI	GGCGCC	1 cut(s)	736
EheI	GGCGCC	1 cut(s)	736
ErhI	CCWWGG	3 cut(s)	262, 303, 738
FaeI	CATG	2 cut(s)	52, 521
FaqI	GGGAC	1 cut(s)	857
FatI	CATG	2 cut(s)	48, 517
Fnu4HI	GCNGC	4 cut(s)	252, 348, 594, 780
Fsp4HI	GCNGC	4 cut(s)	252, 348, 594, 780
FspBI	CTAG	4 cut(s)	99, 147, 263, 791
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	4 cut(s)	252, 348, 594, 780
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	738
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	619
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	2 cut(s)	52, 521
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HinfI	GANTC	4 cut(s)	87, 193, 401, 676
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	4 cut(s)	12, 478, 508, 758
Hpy188I	TCNGA	6 cut(s)	75, 123, 218, 406, 681, 799
Hpy188III	TCNNGA	2 cut(s)	422, 859
Hpy8I	GTNNAC	4 cut(s)	12, 478, 508, 758
HpyAV	CCTTC	4 cut(s)	207, 218, 737, 862
HpyCH4III	ACNGT	2 cut(s)	24, 755
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	7 cut(s)	278, 317, 555, 596, 630, 782, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	561, 607, 779
HpyF3I	CTNAG	1 cut(s)	807
HpySE526I	ACGT	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	2 cut(s)	52, 521
HspAI	GCGC	1 cut(s)	735
KasI	GGCGCC	1 cut(s)	734
Kzo9I	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
LmnI	GCTCC	4 cut(s)	248, 355, 692, 746
Lsp1109I	GCAGC	3 cut(s)	263, 580, 766
LweI	GCATC	3 cut(s)	287, 573, 793
MaeI	CTAG	4 cut(s)	99, 147, 263, 791
MaeII	ACGT	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	391, 455
MalI	GATC	6 cut(s)	19, 501, 527, 586, 617, 885
MboI	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
MboII	GAAGA	1 cut(s)	192
MfeI	CAATTG	1 cut(s)	625
MflI	RGATCY	2 cut(s)	584, 615
MluCI	AATT	5 cut(s)	240, 284, 546, 625, 717
Mly113I	GGCGCC	1 cut(s)	735
MlyI	GAGTC	1 cut(s)	685
MmeI	TCCRAC	3 cut(s)	429, 659, 674
MnlI	CCTC	6 cut(s)	218, 474, 540, 575, 699, 836
MseI	TTAA	1 cut(s)	895
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	3 cut(s)	488, 620, 690
MunI	CAATTG	1 cut(s)	625
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	488, 690
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	561, 607, 779
NarI	GGCGCC	1 cut(s)	735
NciI	CCSGG	1 cut(s)	620
NdeII	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
NlaIII	CATG	2 cut(s)	52, 521
NlaIV	GGNNCC	5 cut(s)	301, 506, 617, 736, 873
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	866
PaqCI	CACCTGC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	645
PfeI	GAWTC	3 cut(s)	87, 193, 401
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	4 cut(s)	253, 349, 595, 781
PleI	GAGTC	1 cut(s)	684
PluTI	GGCGCC	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	684
PpuMI	RGGWCCY	1 cut(s)	871
Psp5II	RGGWCCY	1 cut(s)	871
Psp6I	CCWGG	2 cut(s)	486, 688
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	2 cut(s)	486, 688
PspN4I	GGNNCC	5 cut(s)	301, 506, 617, 736, 873
PspPI	GGNCC	4 cut(s)	362, 478, 505, 871
PspPPI	RGGWCCY	1 cut(s)	871
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	584, 615
RsaI	GTAC	3 cut(s)	26, 67, 434
RsaNI	GTAC	3 cut(s)	25, 66, 433
SaqAI	TTAA	1 cut(s)	895
SatI	GCNGC	4 cut(s)	252, 348, 594, 780
Sau3AI	GATC	6 cut(s)	17, 499, 525, 584, 615, 883
Sau96I	GGNCC	4 cut(s)	362, 478, 505, 871
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	1 cut(s)	685
ScrFI	CCNGG	3 cut(s)	488, 620, 690
SfaNI	GCATC	3 cut(s)	287, 573, 793
SfcI	CTRYAG	1 cut(s)	594
SfoI	GGCGCC	1 cut(s)	736
SfuI	TTCGAA	1 cut(s)	866
SinI	GGWCC	4 cut(s)	362, 478, 505, 871
Sse9I	AATT	5 cut(s)	240, 284, 546, 625, 717
SsiI	CCGC	1 cut(s)	347
SspDI	GGCGCC	1 cut(s)	734
SspMI	CTAG	4 cut(s)	99, 147, 263, 791
StyD4I	CCNGG	3 cut(s)	486, 618, 688
StyI	CCWWGG	3 cut(s)	262, 303, 738
TaaI	ACNGT	2 cut(s)	24, 755
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	85, 324, 866
TasI	AATT	5 cut(s)	240, 284, 546, 625, 717
TatI	WGTACW	2 cut(s)	65, 432
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	87, 193, 401
Tru1I	TTAA	1 cut(s)	895
Tru9I	TTAA	1 cut(s)	895
TscAI	CASTG	2 cut(s)	27, 498
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	3 cut(s)	251, 593, 779
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	2 cut(s)	277, 367
TspRI	CASTG	2 cut(s)	27, 498
VpaK11BI	GGWCC	4 cut(s)	362, 478, 505, 871
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	284, 717
XceI	RCATGY	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	262
XspI	CTAG	4 cut(s)	99, 147, 263, 791
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.