Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

21638422 .. 21640651

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G252100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTCAGGGTTGCATTAAGAAAAAAGGTTACCATTTCAAGAGCTCCTGTGGTTTCTCCAAGCTTCAAGATGGGATTTTCGTCCCAGACTGCGAGACTTGAAGGCAAAGTGGCGCTGATCACTGGAGCAGCAAGTGGCATAGGAAAGGCAACTGCATCCAAATTCATCAGCAATGGTGCCAAAGTTGTCATTGCAGATATCCAACAGCAGCTTGGCCAGGTCACAGCAAACGAGCTCGGTCCCAATGCGACCTTCATCGCCTGTGATGTCTCAAAAGAATCCGACATTTCCAATGCTGTAGATTTCACCATCTCTAAACATAGCCAGCTTGACATTATGTACGCCAATGCAGGGGTAGCCTGCAACACTCCCCCGAGCATTGTGGACCTCGACCTGGCAGTGTTCGATCGTGTCATGAACATCAACGTGCGAGGAGTCGTTGCAGGAATGAAACATGCTTCGCGTGTGATGATCCCGCGCAAAACTGGCTCCATTCTATGCACAGCCAGTGTCACGGGACTAATGGGAGGACTCGCACAGCACACCTATTCGGTATCCAAGTTTGCTGTCATAGGCATTGTTAAGTCTCTGGCTGCAGAGCTAAGCAAGCATGGAATTCGGGTCAATTGTGTATCGCCATTTGCCATCCCAACCCCATTTGTACTTGAAGAAATGAGTCGGATTTTCCCGGGAGTCGATATACAGCGTCTAATAGAAATAACACAGAATGCCGGCGTCTTGGAGGGCACAAATTGTGAACCCAACGATATTGCTAATGCTGCACTTTATCTAGCTTCAGATGATGCTAAATATGTTAGTGGGCATAATTTGGTGATAGATGGAGGTTTTACATCTTTCAAGACTTTGGAATTTCCTGCACCAGATCAGGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

299

Amino Acids

31.53

Weight (kDa)

8.56

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccII	CGCG	2 cut(s)	463, 478
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	3 cut(s)	161, 615, 869
AcuI	CTGAAG	1 cut(s)	780
AcyI	GRCGYC	1 cut(s)	735
AfaI	GTAC	2 cut(s)	341, 663
AfiI	CCNNNNNNNGG	2 cut(s)	351, 394
AgsI	TTSAA	5 cut(s)	39, 67, 101, 668, 859
AjnI	CCWGG	2 cut(s)	216, 393
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	7 cut(s)	44, 63, 211, 235, 328, 601, 794
AluI	AGCT	7 cut(s)	44, 63, 211, 235, 328, 601, 794
Alw21I	GWGCWC	2 cut(s)	46, 237
Alw26I	GTCTC	3 cut(s)	88, 274, 591
AlwI	GGATC	1 cut(s)	466
Ama87I	CYCGRG	2 cut(s)	373, 688
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	4 cut(s)	128, 208, 593, 779
ApoI	RAATTY	3 cut(s)	161, 615, 869
AspLEI	GCGC	2 cut(s)	115, 480
AspS9I	GGNCC	2 cut(s)	239, 385
AsuC2I	CCSGG	2 cut(s)	689, 690
AsuHPI	GGTGA	2 cut(s)	298, 844
AvaI	CYCGRG	2 cut(s)	373, 688
AvaII	GGWCC	2 cut(s)	239, 385
BaeGI	GKGCMC	1 cut(s)	749
BalI	TGGCCA	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	46, 237
Bbv12I	GWGCWC	2 cut(s)	46, 237
BbvI	GCAGC	4 cut(s)	140, 220, 580, 766
BccI	CCATC	4 cut(s)	64, 317, 653, 833
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciT130I	CCWGG	2 cut(s)	218, 395
BciVI	GTATCC	1 cut(s)	565
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	2 cut(s)	689, 690
BcoDI	GTCTC	3 cut(s)	88, 274, 591
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	2 cut(s)	297, 594
BfoI	RGCGCY	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	129, 209, 594, 780
BlpI	GCTNAGC	1 cut(s)	602
BlsI	GCNGC	4 cut(s)	130, 210, 595, 781
Bme1390I	CCNGG	4 cut(s)	218, 395, 689, 690
Bme18I	GGWCC	2 cut(s)	239, 385
BmeT110I	CYCGRG	2 cut(s)	373, 688
BmgT120I	GGNCC	2 cut(s)	239, 385
BmiI	GGNNCC	3 cut(s)	178, 241, 490
BmrFI	CCNGG	4 cut(s)	218, 395, 689, 690
BmsI	GCATC	2 cut(s)	164, 793
BpmI	CTGGAG	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	602
BpuMI	CCSGG	2 cut(s)	689, 690
BsaHI	GRCGYC	1 cut(s)	735
BsaJI	CCNNGG	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 394
Bse118I	RCCGGY	1 cut(s)	731
Bse1I	ACTGG	3 cut(s)	127, 490, 507
Bse3DI	GCAATG	2 cut(s)	178, 189
BseBI	CCWGG	2 cut(s)	218, 395
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	2 cut(s)	155, 645
BseLI	CCNNNNNNNGG	2 cut(s)	351, 394
BseMI	GCAATG	2 cut(s)	178, 189
BseNI	ACTGG	3 cut(s)	127, 490, 507
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	4 cut(s)	140, 220, 580, 766
BsgI	GTGCAG	2 cut(s)	765, 861
Bsh1236I	CGCG	2 cut(s)	463, 478
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	46, 237
BsiHKCI	CYCGRG	2 cut(s)	373, 688
BsiSI	CCGG	2 cut(s)	689, 732
BslFI	GGGAC	3 cut(s)	67, 225, 531
BslI	CCNNNNNNNGG	2 cut(s)	351, 394
BsmAI	GTCTC	3 cut(s)	88, 274, 591
BsmFI	GGGAC	3 cut(s)	67, 225, 531
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	1 cut(s)	216
BsoBI	CYCGRG	2 cut(s)	373, 688
Bsp1286I	GDGCHC	3 cut(s)	46, 237, 749
Bsp143I	GATC	4 cut(s)	117, 406, 471, 883
Bsp1720I	GCTNAGC	1 cut(s)	602
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	1 cut(s)	216
BspFNI	CGCG	2 cut(s)	463, 478
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	178, 241, 490
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	178, 189
BsrFI	RCCGGY	1 cut(s)	731
BsrI	ACTGG	3 cut(s)	127, 490, 507
BssAI	RCCGGY	1 cut(s)	731
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	4 cut(s)	117, 406, 471, 883
BssNI	GRCGYC	1 cut(s)	735
Bst2UI	CCWGG	2 cut(s)	218, 395
BstACI	GRCGYC	1 cut(s)	735
BstC8I	GCNNGC	4 cut(s)	326, 361, 608, 733
BstDEI	CTNAG	1 cut(s)	602
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	2 cut(s)	155, 645
BstFNI	CGCG	2 cut(s)	463, 478
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 480
BstKTI	GATC	4 cut(s)	120, 409, 474, 886
BstMAI	GTCTC	3 cut(s)	88, 274, 591
BstMBI	GATC	4 cut(s)	117, 406, 471, 883
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 486, 607, 779
BstNI	CCWGG	2 cut(s)	218, 395
BstNSI	RCATGY	1 cut(s)	458
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	4 cut(s)	216, 393, 687, 688
BstSFI	CTRYAG	2 cut(s)	297, 594
BstSLI	GKGCMC	1 cut(s)	749
BstUI	CGCG	2 cut(s)	463, 478
BstV1I	GCAGC	4 cut(s)	140, 220, 580, 766
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	155, 645
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	120, 405, 514
Cac8I	GCNNGC	4 cut(s)	326, 361, 608, 733
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	2 cut(s)	115, 480
Cfr10I	RCCGGY	1 cut(s)	731
Cfr13I	GGNCC	2 cut(s)	239, 385
Cfr9I	CCCGGG	1 cut(s)	688
CseI	GACGC	2 cut(s)	695, 724
Csp6I	GTAC	2 cut(s)	340, 662
CviAII	CATG	3 cut(s)	415, 455, 611
CviQI	GTAC	2 cut(s)	340, 662
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	4 cut(s)	119, 408, 473, 885
DpnII	GATC	4 cut(s)	117, 406, 471, 883
EaeI	YGGCCR	1 cut(s)	214
Ecl136II	GAGCTC	2 cut(s)	44, 235
Eco24I	GRGCYC	2 cut(s)	46, 237
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	239, 385
Eco53kI	GAGCTC	2 cut(s)	44, 235
Eco57I	CTGAAG	1 cut(s)	780
Eco88I	CYCGRG	2 cut(s)	373, 688
Eco91I	GGTNACC	1 cut(s)	28
EcoICRI	GAGCTC	2 cut(s)	44, 235
EcoO65I	GGTNACC	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	216, 393
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	2 cut(s)	46, 237
FaeI	CATG	3 cut(s)	418, 458, 614
FaqI	GGGAC	3 cut(s)	67, 225, 531
FatI	CATG	3 cut(s)	414, 454, 610
FauI	CCCGC	1 cut(s)	483
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	4 cut(s)	129, 209, 594, 780
FokI	GGATG	2 cut(s)	142, 632
FriOI	GRGCYC	2 cut(s)	46, 237
Fsp4HI	GCNGC	4 cut(s)	129, 209, 594, 780
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	2 cut(s)	114, 479
GluI	GCNGC	4 cut(s)	129, 209, 594, 780
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	689, 732
HgaI	GACGC	2 cut(s)	695, 724
HhaI	GCGC	2 cut(s)	115, 480
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	3 cut(s)	418, 458, 614
Hin6I	GCGC	2 cut(s)	113, 478
HinP1I	GCGC	2 cut(s)	113, 478
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	5 cut(s)	278, 435, 531, 676, 693
HpaII	CCGG	2 cut(s)	689, 732
HphI	GGTGA	2 cut(s)	298, 844
Hpy166II	GTNNAC	2 cut(s)	385, 758
Hpy188I	TCNGA	3 cut(s)	283, 681, 799
Hpy188III	TCNNGA	4 cut(s)	39, 67, 415, 859
Hpy8I	GTNNAC	2 cut(s)	385, 758
HpyAV	CCTTC	2 cut(s)	95, 262
HpyCH4IV	ACGT	1 cut(s)	426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 486, 607, 779
HpyF3I	CTNAG	1 cut(s)	602
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	3 cut(s)	418, 458, 614
HspAI	GCGC	2 cut(s)	113, 478
KroI	GCCGGC	1 cut(s)	731
KroNI	GCCGGC	1 cut(s)	733
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	117, 406, 471, 883
LmnI	GCTCC	3 cut(s)	49, 125, 494
Lsp1109I	GCAGC	4 cut(s)	140, 220, 580, 766
LweI	GCATC	2 cut(s)	164, 793
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	28, 220, 511
MalI	GATC	4 cut(s)	119, 408, 473, 885
MboI	GATC	4 cut(s)	117, 406, 471, 883
MboII	GAAGA	1 cut(s)	680
MfeI	CAATTG	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	46, 237, 749
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	6 cut(s)	161, 615, 625, 751, 826, 869
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	4 cut(s)	444, 525, 685, 702
MmeI	TCCRAC	3 cut(s)	226, 306, 659
MnlI	CCTC	5 cut(s)	398, 425, 521, 736, 836
Mox20I	TGGCCA	1 cut(s)	216
MroNI	GCCGGC	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	3 cut(s)	17, 582, 895
MslI	CAYNNNNRTG	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	2 cut(s)	689, 732
MspR9I	CCNGG	4 cut(s)	218, 395, 689, 690
MunI	CAATTG	1 cut(s)	625
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	2 cut(s)	218, 395
MvnI	CGCG	2 cut(s)	463, 478
MwoI	GCNNNNNNNGC	4 cut(s)	356, 486, 607, 779
NaeI	GCCGGC	1 cut(s)	733
NciI	CCSGG	2 cut(s)	689, 690
NdeII	GATC	4 cut(s)	117, 406, 471, 883
NgoMIV	GCCGGC	1 cut(s)	731
NlaIII	CATG	3 cut(s)	418, 458, 614
NlaIV	GGNNCC	3 cut(s)	178, 241, 490
NmuCI	GTSAC	2 cut(s)	220, 511
NspI	RCATGY	1 cut(s)	458
PagI	TCATGA	1 cut(s)	414
PctI	GAATGC	1 cut(s)	733
PdiI	GCCGGC	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	130, 210, 595, 781
Ple19I	CGATCG	1 cut(s)	409
PleI	GAGTC	4 cut(s)	443, 525, 684, 701
PpsI	GAGTC	4 cut(s)	443, 525, 684, 701
Psp124BI	GAGCTC	2 cut(s)	46, 237
Psp6I	CCWGG	2 cut(s)	216, 393
PspEI	GGTNACC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	216, 393
PspN4I	GGNNCC	3 cut(s)	178, 241, 490
PspPI	GGNCC	2 cut(s)	239, 385
PstI	CTGCAG	1 cut(s)	598
PvuI	CGATCG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	341, 663
RsaNI	GTAC	2 cut(s)	340, 662
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	2 cut(s)	46, 237
SaqAI	TTAA	3 cut(s)	17, 582, 895
SatI	GCNGC	4 cut(s)	129, 209, 594, 780
Sau3AI	GATC	4 cut(s)	117, 406, 471, 883
Sau96I	GGNCC	2 cut(s)	239, 385
SchI	GAGTC	4 cut(s)	444, 525, 685, 702
ScrFI	CCNGG	4 cut(s)	218, 395, 689, 690
SduI	GDGCHC	3 cut(s)	46, 237, 749
SfaNI	GCATC	2 cut(s)	164, 793
SfcI	CTRYAG	2 cut(s)	297, 594
SinI	GGWCC	2 cut(s)	239, 385
SmaI	CCCGGG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	6 cut(s)	161, 615, 625, 751, 826, 869
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	1 cut(s)	791
SstI	GAGCTC	2 cut(s)	46, 237
StyD4I	CCNGG	4 cut(s)	216, 393, 687, 688
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	390, 405, 696
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	6 cut(s)	161, 615, 625, 751, 826, 869
TatI	WGTACW	1 cut(s)	661
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	17, 582, 895
Tru9I	TTAA	3 cut(s)	17, 582, 895
TscAI	CASTG	3 cut(s)	127, 405, 514
TseFI	GTSAC	2 cut(s)	220, 511
TseI	GCWGC	4 cut(s)	128, 208, 593, 779
Tsp45I	GTSAC	2 cut(s)	220, 511
TspDTI	ATGAA	4 cut(s)	154, 244, 431, 464
TspMI	CCCGGG	1 cut(s)	688
TspRI	CASTG	3 cut(s)	127, 405, 514
VpaK11BI	GGWCC	2 cut(s)	239, 385
XapI	RAATTY	3 cut(s)	161, 615, 869
XceI	RCATGY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmaI	CCCGGG	1 cut(s)	688
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.