Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

36539345 .. 36540667

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0227700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTTTTACAGTATAATGAGTGGTAGATCTGTGCATTCTGTTTTGGTTGGGCTTGTGTGCCTGGCCCTTGCCTCTGCTATTTGTTGTTCAAGTGTTGGAAGCTCCAACAAAATTATGTGCTTGGAGAGTGAAAGGCATGCTCTTCTCCAGTTCAAACAAGGCCTTGTGGATGAGTCCAATGCTCTTGCTTCTTGGGAAAACAAGAAAGATTGCTGCAAGTGGAGAGGAATAGCGTGCAACAACAAAACAGGTCATGTCACAAGACTTGATTTCTCCTTTATATCTTTCAATTATACTGAAGTTCCTTTAAGAGGTGAAATTAGTCATTCACTACTTGAATTGCCATATCTAAATTACTTGGACCTCAGTTATAATGATTTTGGAGGAATGATCATTCCCAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGCAGCTGCTGATTTCAGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCATACTCTTGATCTTTCCTTCAATGATTTTGAAGGAATGATGGTTCCCAAATTCATTGGCTTTTTGAGTCAATTGAAAGAACTCAAACTTGCAGCTGCTAATTTCAGTGGACATGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCACACTCTTGATCTTTCCGGGAACCATGATGCTAGTTCTGAAAACCTTGAGTGGTTATCTCATCTTTCTTCCTTGAGATACTTGAACATGGCATGGCTGAATTTGTCTGAGGCTGTGAATTGGCCACAATCTTTAAGCAAGCTCACTTTACTGACAGAGCTTCAGTTATCCCAGTGTAACCTTCCTGATGTCAATCTAAGATCACTTTCCTTTATTAATTCTTCCACCTCTCTTCAACTCCTTGACCTCTCTTGGAACTCTCTTAATTCTTCAATATTTTATTGGATAGCCAATGTCAGCAGCAACTTTGTCCATATTGATCTCTCTTCCAACAATCTCGAAGGTCCCATCCCAGATGTCTTCACAAGCATGCTTTCTCTAGTAACACTACATCTGTCTTCGAATCACCTTGAAGGCCCCATCCCAGATGTCTTCACAAGCATGCTTTCTCTAGTAACACTAGATCTCTCTTACAATCAACTTGAAGGTGGGATACCAAAAAGCTTTCAAAACTTATGCAGCTTAGAGTCATTGACCTTATGGTCAAACCAATTGTCTGAAAACATTGAGGACTCTGTTGAAACCTTGTCTTGTGCTTATAACACACTTGACACCTTGATCTTGGGTTTGAACCAATTTTGGGGGTCCTGGCCAGATTTGAAACGTTTTTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

440

Amino Acids

48.79

Weight (kDa)

5.1

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	42 - 80	5.3e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	109 - 349	2.2e-18	Leucine-rich repeat region
LRR_8	PF13855	341 - 400	1.4e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	372, 1245
AasI	GACNNNNNNGTC	1 cut(s)	1186
AclI	AACGTT	1 cut(s)	1309
AcoI	YGGCCR	2 cut(s)	767, 1295
AcsI	RAATTY	2 cut(s)	548, 745
AcuI	CTGAAG	2 cut(s)	318, 791
AfiI	CCNNNNNNNGG	4 cut(s)	311, 479, 626, 1285
AflIII	ACRYGT	1 cut(s)	610
AjnI	CCWGG	2 cut(s)	60, 1292
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
AluBI	AGCT	7 cut(s)	102, 446, 593, 787, 805, 1149, 1167
AluI	AGCT	7 cut(s)	102, 446, 593, 787, 805, 1149, 1167
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	5 cut(s)	63, 160, 767, 1060, 1295
ApeKI	GCWGC	7 cut(s)	213, 443, 446, 590, 593, 945, 1164
ApoI	RAATTY	2 cut(s)	548, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	1184, 1216
AseI	ATTAAT	1 cut(s)	861
AspS9I	GGNCC	6 cut(s)	64, 361, 461, 989, 1061, 1290
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	2 cut(s)	326, 1043
AsuII	TTCGAA	1 cut(s)	1046
AvaII	GGWCC	4 cut(s)	361, 461, 989, 1290
BalI	TGGCCA	2 cut(s)	769, 1297
BarI	GAAGNNNNNNTAC	2 cut(s)	1122, 1154
BbsI	GAAGAC	3 cut(s)	997, 1035, 1069
BbvI	GCAGC	7 cut(s)	200, 433, 455, 580, 602, 957, 1176
BccI	CCATC	3 cut(s)	532, 1001, 1073
BciT130I	CCWGG	2 cut(s)	62, 1294
BciVI	GTATCC	1 cut(s)	1131
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	664
BfaI	CTAG	4 cut(s)	678, 1025, 1097, 1106
BfuI	GTATCC	1 cut(s)	1131
BglII	AGATCT	2 cut(s)	26, 1108
BisI	GCNGC	7 cut(s)	214, 444, 447, 591, 594, 946, 1165
BlsI	GCNGC	7 cut(s)	215, 445, 448, 592, 595, 947, 1166
Bme1390I	CCNGG	3 cut(s)	62, 664, 1294
Bme18I	GGWCC	4 cut(s)	361, 461, 989, 1290
BmgT120I	GGNCC	6 cut(s)	64, 361, 461, 989, 1061, 1290
BmiI	GGNNCC	5 cut(s)	543, 668, 991, 1063, 1291
BmrFI	CCNGG	3 cut(s)	62, 664, 1294
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	1 cut(s)	664
BmuI	ACTGGG	1 cut(s)	811
BpiI	GAAGAC	3 cut(s)	997, 1035, 1069
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	1046
BpuEI	CTTGAG	2 cut(s)	713, 739
BpuMI	CCSGG	1 cut(s)	664
BsaBI	GATNNNNATC	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	4 cut(s)	311, 479, 626, 1285
Bse1I	ACTGG	2 cut(s)	148, 817
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	62, 1294
BseGI	GGATG	3 cut(s)	175, 993, 1065
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	4 cut(s)	311, 479, 626, 1285
BseMII	CTCAG	2 cut(s)	379, 744
BseNI	ACTGG	2 cut(s)	148, 817
BseXI	GCAGC	7 cut(s)	200, 433, 455, 580, 602, 957, 1176
BshFI	GGCC	5 cut(s)	65, 162, 769, 1062, 1297
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	4 cut(s)	311, 479, 626, 1285
BsmFI	GGGAC	1 cut(s)	975
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	5 cut(s)	65, 162, 769, 1062, 1297
Bsp119I	TTCGAA	1 cut(s)	1046
Bsp143I	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
BspANI	GGCC	5 cut(s)	65, 162, 769, 1062, 1297
BspCNI	CTCAG	2 cut(s)	378, 745
BspLI	GGNNCC	5 cut(s)	543, 668, 991, 1063, 1291
BspQI	GCTCTTC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	1046
BsrI	ACTGG	2 cut(s)	148, 817
BssMI	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
Bst2UI	CCWGG	2 cut(s)	62, 1294
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	3 cut(s)	147, 882, 976
BstBI	TTCGAA	1 cut(s)	1046
BstC8I	GCNNGC	5 cut(s)	138, 235, 785, 1016, 1088
BstDEI	CTNAG	4 cut(s)	365, 753, 842, 1168
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	175, 993, 1065
BstKTI	GATC	8 cut(s)	29, 393, 511, 658, 848, 967, 1111, 1266
BstMBI	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
BstNI	CCWGG	2 cut(s)	62, 1294
BstNSI	RCATGY	4 cut(s)	140, 614, 1018, 1090
BstSCI	CCNGG	3 cut(s)	60, 662, 1292
BstV1I	GCAGC	7 cut(s)	200, 433, 455, 580, 602, 957, 1176
BstV2I	GAAGAC	3 cut(s)	997, 1035, 1069
BstX2I	RGATCY	2 cut(s)	26, 1108
BstYI	RGATCY	2 cut(s)	26, 1108
BsuI	GTATCC	1 cut(s)	1131
BsuRI	GGCC	5 cut(s)	65, 162, 769, 1062, 1297
BtsCI	GGATG	3 cut(s)	175, 993, 1065
BtsIMutI	CAGTG	3 cut(s)	463, 610, 824
Cac8I	GCNNGC	5 cut(s)	138, 235, 785, 1016, 1088
CaiI	CAGNNNCTG	1 cut(s)	449
Cfr13I	GGNCC	6 cut(s)	64, 361, 461, 989, 1061, 1290
CviAII	CATG	8 cut(s)	137, 254, 611, 671, 733, 738, 1015, 1087
DdeI	CTNAG	4 cut(s)	365, 753, 842, 1168
DpnI	GATC	8 cut(s)	28, 392, 510, 657, 847, 966, 1110, 1265
DpnII	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
DrdI	GACNNNNNNGTC	1 cut(s)	1186
DseDI	GACNNNNNNGTC	1 cut(s)	1186
EaeI	YGGCCR	2 cut(s)	767, 1295
Eam1104I	CTCTTC	3 cut(s)	147, 882, 976
EarI	CTCTTC	3 cut(s)	147, 882, 976
Eco147I	AGGCCT	1 cut(s)	162
Eco47I	GGWCC	4 cut(s)	361, 461, 989, 1290
Eco57I	CTGAAG	2 cut(s)	318, 791
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoO109I	RGGNCCY	3 cut(s)	989, 1061, 1290
EcoRII	CCWGG	2 cut(s)	60, 1292
FaeI	CATG	8 cut(s)	140, 257, 614, 674, 736, 741, 1018, 1090
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	8 cut(s)	136, 253, 610, 670, 732, 737, 1014, 1086
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	7 cut(s)	214, 444, 447, 591, 594, 946, 1165
FokI	GGATG	3 cut(s)	182, 980, 1052
Fsp4HI	GCNGC	7 cut(s)	214, 444, 447, 591, 594, 946, 1165
FspBI	CTAG	4 cut(s)	678, 1025, 1097, 1106
GluI	GCNGC	7 cut(s)	214, 444, 447, 591, 594, 946, 1165
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	5 cut(s)	65, 162, 769, 1062, 1297
HapII	CCGG	1 cut(s)	663
Hin1II	CATG	8 cut(s)	140, 257, 614, 674, 736, 741, 1018, 1090
HindIII	AAGCTT	1 cut(s)	1147
HinfI	GANTC	6 cut(s)	173, 418, 565, 1048, 1172, 1217
HpaII	CCGG	1 cut(s)	663
HphI	GGTGA	2 cut(s)	326, 1043
Hpy166II	GTNNAC	2 cut(s)	461, 608
Hpy188I	TCNGA	3 cut(s)	685, 754, 1204
Hpy188III	TCNNGA	4 cut(s)	506, 653, 830, 983
Hpy8I	GTNNAC	2 cut(s)	461, 608
HpyAV	CCTTC	6 cut(s)	524, 526, 836, 980, 1052, 1124
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	1309
HpyCH4V	TGCA	8 cut(s)	34, 216, 237, 443, 499, 590, 646, 1164
HpyF3I	CTNAG	4 cut(s)	365, 753, 842, 1168
HpySE526I	ACGT	1 cut(s)	1309
Hsp92II	CATG	8 cut(s)	140, 257, 614, 674, 736, 741, 1018, 1090
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
LguI	GCTCTTC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	7 cut(s)	200, 433, 455, 580, 602, 957, 1176
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	4 cut(s)	678, 1025, 1097, 1106
MaeII	ACGT	1 cut(s)	1309
MaeIII	GTNAC	4 cut(s)	256, 821, 1027, 1099
MalI	GATC	8 cut(s)	28, 392, 510, 657, 847, 966, 1110, 1265
MboI	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
MboII	GAAGA	9 cut(s)	134, 705, 858, 869, 906, 963, 997, 1035, 1069
MfeI	CAATTG	3 cut(s)	422, 569, 1196
MflI	RGATCY	2 cut(s)	26, 1108
MlsI	TGGCCA	2 cut(s)	769, 1297
MluNI	TGGCCA	2 cut(s)	769, 1297
MlyI	GAGTC	5 cut(s)	182, 427, 574, 1181, 1211
MmeI	TCCRAC	3 cut(s)	76, 129, 999
Mox20I	TGGCCA	2 cut(s)	769, 1297
MscI	TGGCCA	2 cut(s)	769, 1297
MseI	TTAA	4 cut(s)	308, 779, 861, 909
MslI	CAYNNNNRTG	2 cut(s)	1013, 1085
Msp20I	TGGCCA	2 cut(s)	769, 1297
MspA1I	CMGCKG	2 cut(s)	446, 593
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	3 cut(s)	62, 664, 1294
MunI	CAATTG	3 cut(s)	422, 569, 1196
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	62, 1294
NciI	CCSGG	1 cut(s)	664
NdeII	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
NlaIII	CATG	8 cut(s)	140, 257, 614, 674, 736, 741, 1018, 1090
NlaIV	GGNNCC	5 cut(s)	543, 668, 991, 1063, 1291
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	4 cut(s)	140, 614, 1018, 1090
NspV	TTCGAA	1 cut(s)	1046
PaeI	GCATGC	3 cut(s)	140, 1018, 1090
PceI	AGGCCT	1 cut(s)	162
PciI	ACATGT	1 cut(s)	610
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	1048
PfoI	TCCNGGA	1 cut(s)	662
PkrI	GCNGC	7 cut(s)	215, 445, 448, 592, 595, 947, 1166
PleI	GAGTC	5 cut(s)	181, 426, 573, 1180, 1211
PpsI	GAGTC	5 cut(s)	181, 426, 573, 1180, 1211
PpuMI	RGGWCCY	2 cut(s)	989, 1290
PscI	ACATGT	1 cut(s)	610
PshBI	ATTAAT	1 cut(s)	861
PsiI	TTATAA	2 cut(s)	372, 1245
Psp1406I	AACGTT	1 cut(s)	1309
Psp5II	RGGWCCY	2 cut(s)	989, 1290
Psp6I	CCWGG	2 cut(s)	60, 1292
PspGI	CCWGG	2 cut(s)	60, 1292
PspN4I	GGNNCC	5 cut(s)	543, 668, 991, 1063, 1291
PspPI	GGNCC	6 cut(s)	64, 361, 461, 989, 1061, 1290
PspPPI	RGGWCCY	2 cut(s)	989, 1290
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	2 cut(s)	26, 1108
PvuII	CAGCTG	2 cut(s)	446, 593
RseI	CAYNNNNRTG	2 cut(s)	1013, 1085
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	4 cut(s)	308, 779, 861, 909
SatI	GCNGC	7 cut(s)	214, 444, 447, 591, 594, 946, 1165
Sau3AI	GATC	8 cut(s)	26, 390, 508, 655, 845, 964, 1108, 1263
Sau96I	GGNCC	6 cut(s)	64, 361, 461, 989, 1061, 1290
SchI	GAGTC	5 cut(s)	182, 427, 574, 1181, 1211
ScrFI	CCNGG	3 cut(s)	62, 664, 1294
SfaNI	GCATC	1 cut(s)	664
SfuI	TTCGAA	1 cut(s)	1046
SinI	GGWCC	4 cut(s)	361, 461, 989, 1290
SmiMI	CAYNNNNRTG	2 cut(s)	1013, 1085
SmlI	CTYRAG	2 cut(s)	692, 718
SmoI	CTYRAG	2 cut(s)	692, 718
SphI	GCATGC	3 cut(s)	140, 1018, 1090
SseBI	AGGCCT	1 cut(s)	162
SspI	AATATT	1 cut(s)	921
SspMI	CTAG	4 cut(s)	678, 1025, 1097, 1106
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	60, 662, 1292
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	1312
TaqI	TCGA	2 cut(s)	984, 1046
TfiI	GAWTC	1 cut(s)	1048
Tru1I	TTAA	4 cut(s)	308, 779, 861, 909
Tru9I	TTAA	4 cut(s)	308, 779, 861, 909
TscAI	CASTG	3 cut(s)	463, 610, 824
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	7 cut(s)	213, 443, 446, 590, 593, 945, 1164
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	394, 541
TspRI	CASTG	3 cut(s)	463, 610, 824
VpaK11BI	GGWCC	4 cut(s)	361, 461, 989, 1290
VspI	ATTAAT	1 cut(s)	861
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	2 cut(s)	548, 745
XceI	RCATGY	4 cut(s)	140, 614, 1018, 1090
XspI	CTAG	4 cut(s)	678, 1025, 1097, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.