Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

54032448 .. 54033820

Gene Structure 1373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG340800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCAAAGAAGGACCCACATCCCGTCGTCTATTTCTAAATCCTTTTTGATTCCTTCTTTCTCACCTCATAGTGTTAAGCACCAGAAAAGACACAAATTGACCAAGAATAGTGAGAGCTCAAGAACTGAAGAAAGTGGGGTGAAGCTAGAACCAGAAAACAAAATCCATCTTTCATCAACAATTAAAGAAAGTATGTTCGGGGTTGGATTAAGAAAACATGTTACCTTTACAAGAGCTTTGGTTTCTCCAAGCTGCTTCAGGCTGGGGTATTCATCCCAGAGCGGAAGACTTGAAGGAAAGGTGGCACTGATTACAGGAGCAGCAAGTGGTATAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGAGCCAAGGTTGTTCTTGCAGATATCCAACACCAGCTTGGCCAAGACGCAGCAAAGGAGCTTGGTCCTAATGCCAGCTTCATTGCCTGTGATGTCATAAAAGAATCCGACATTTCCAATGCTGTAGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGCACAGCAATGCAGGTGTAGCTTGTAAATCTCCTCCAAGCATTGTGGACCTTGACCTGGCAGTGTTTGATCGTGTCATGAACATCAACGTGCGAGGAGTCCTGGCAGGAATTAAGCACGCTTCACGTGTGATGATCCCCCGCAAAACTGGCTCAATTCTCTGCACAGCCAGCGTCACAGGACTAATGGGAGGACTAGCACAGCACACCTATTCTCTGTCCAAGTTTGCTGTAATAGGCATTGTCAAGTCTCTGGCTGCAGAGCTACGCCAGCATGGGATCCGGGTCAATTGCATATCCCCATTCGCCATTCCAACCCCATTTGTTATCGAAGAAATGAGTCAGATTTATCCAGGAGCTGATGAAGAGAAGTTAATTGAAATTATACATCGCTCTGGGGCCTTAGAAGGAGCAAACTGTGAACCCAATGACATTGCCAATGCTGCACTTTACCTAGCTTCAGATGATGCTAAATATGTTAGTGGCCATAATTTGGTTGTAGATGGAGGTTTTACATCTTTCAAGACTTTTAGTTTCCCTGCACCAGATCAGGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

362

Amino Acids

38.82

Weight (kDa)

9.04

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	100 - 287	8.3e-49	short chain dehydrogenase
KR	PF08659	102 - 275	6.8e-08	KR domain
adh_short_C2	PF13561	106 - 348	4e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	533
AccB7I	CCANNNNNTGG	1 cut(s)	1021
AccBSI	CCGCTC	1 cut(s)	282
AciI	CCGC	2 cut(s)	282, 670
AclWI	GGATC	3 cut(s)	658, 802, 815
AcoI	YGGCCR	2 cut(s)	406, 1012
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	3 cut(s)	147, 241, 972
AcvI	CACGTG	1 cut(s)	656
AfiI	CCNNNNNNNGG	2 cut(s)	586, 1021
AflIII	ACRYGT	2 cut(s)	217, 655
AgsI	TTSAA	3 cut(s)	293, 908, 1051
AjnI	CCWGG	3 cut(s)	585, 630, 880
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	783
AlwI	GGATC	3 cut(s)	658, 802, 815
AlwNI	CAGNNNCTG	1 cut(s)	887
AoxI	GGCC	3 cut(s)	406, 927, 1012
ApeKI	GCWGC	5 cut(s)	252, 320, 416, 785, 971
ApoI	RAATTY	1 cut(s)	353
AspS9I	GGNCC	4 cut(s)	12, 431, 577, 927
AsuC2I	CCSGG	1 cut(s)	812
AsuHPI	GGTGA	3 cut(s)	54, 151, 490
AvaII	GGWCC	3 cut(s)	12, 431, 577
BalI	TGGCCA	2 cut(s)	408, 1014
BamHI	GGATCC	1 cut(s)	807
BanII	GRGCYC	1 cut(s)	119
BbrPI	CACGTG	1 cut(s)	656
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	5 cut(s)	239, 332, 428, 772, 958
BccI	CCATC	3 cut(s)	174, 509, 1025
BciT130I	CCWGG	3 cut(s)	587, 632, 882
BcnI	CCSGG	1 cut(s)	812
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	3 cut(s)	146, 725, 983
BfmI	CTRYAG	2 cut(s)	489, 786
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	5 cut(s)	253, 321, 417, 786, 972
BlsI	GCNGC	5 cut(s)	254, 322, 418, 787, 973
Bme1390I	CCNGG	4 cut(s)	587, 632, 812, 882
Bme18I	GGWCC	3 cut(s)	12, 431, 577
BmgT120I	GGNCC	4 cut(s)	12, 431, 577, 927
BmiI	GGNNCC	4 cut(s)	14, 370, 809, 928
BmrFI	CCNGG	4 cut(s)	587, 632, 812, 882
BmsI	GCATC	2 cut(s)	356, 985
BpiI	GAAGAC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	812
BsaAI	YACGTR	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 1021
Bse1I	ACTGG	1 cut(s)	682
Bse3DI	GCAATG	4 cut(s)	370, 447, 544, 960
BseBI	CCWGG	3 cut(s)	587, 632, 882
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	18, 272
BseLI	CCNNNNNNNGG	2 cut(s)	586, 1021
BseMI	GCAATG	4 cut(s)	370, 447, 544, 960
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	2 cut(s)	552, 639
BseXI	GCAGC	5 cut(s)	239, 332, 428, 772, 958
BseYI	CCCAGC	1 cut(s)	262
BsgI	GTGCAG	3 cut(s)	676, 957, 1053
BshFI	GGCC	3 cut(s)	408, 929, 1014
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	811
BslI	CCNNNNNNNGG	2 cut(s)	586, 1021
BsmAI	GTCTC	1 cut(s)	783
BsnI	GGCC	3 cut(s)	408, 929, 1014
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	598, 663, 807, 1075
BspACI	CCGC	2 cut(s)	282, 670
BspANI	GGCC	3 cut(s)	408, 929, 1014
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	4 cut(s)	14, 370, 809, 928
BspMAI	CTGCAG	1 cut(s)	790
BspMI	ACCTGC	1 cut(s)	533
BspPI	GGATC	3 cut(s)	658, 802, 815
BsrBI	CCGCTC	1 cut(s)	282
BsrDI	GCAATG	4 cut(s)	370, 447, 544, 960
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	4 cut(s)	598, 663, 807, 1075
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	587, 632, 882
Bst4CI	ACNGT	1 cut(s)	947
Bst6I	CTCTTC	1 cut(s)	888
BstBAI	YACGTR	1 cut(s)	656
BstC8I	GCNNGC	5 cut(s)	442, 518, 648, 700, 800
BstDEI	CTNAG	2 cut(s)	507, 931
BstF5I	GGATG	2 cut(s)	18, 272
BstKTI	GATC	4 cut(s)	601, 666, 810, 1078
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	4 cut(s)	598, 663, 807, 1075
BstMWI	GCNNNNNNNGC	6 cut(s)	517, 548, 678, 699, 799, 971
BstNI	CCWGG	3 cut(s)	587, 632, 882
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	4 cut(s)	585, 630, 810, 880
BstSFI	CTRYAG	2 cut(s)	489, 786
BstV1I	GCAGC	5 cut(s)	239, 332, 428, 772, 958
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	807
BsuRI	GGCC	3 cut(s)	408, 929, 1014
BtgZI	GCGATG	1 cut(s)	902
BtsCI	GGATG	2 cut(s)	18, 272
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	2 cut(s)	305, 597
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	5 cut(s)	442, 518, 648, 700, 800
CaiI	CAGNNNCTG	1 cut(s)	887
CciI	TCATGA	1 cut(s)	606
Cfr13I	GGNCC	4 cut(s)	12, 431, 577, 927
CseI	GACGC	2 cut(s)	422, 691
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	3 cut(s)	218, 607, 803
DdeI	CTNAG	2 cut(s)	507, 931
DpnI	GATC	4 cut(s)	600, 665, 809, 1077
DpnII	GATC	4 cut(s)	598, 663, 807, 1075
EaeI	YGGCCR	2 cut(s)	406, 1012
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	3 cut(s)	12, 431, 577
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	3 cut(s)	147, 241, 972
Eco72I	CACGTG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	2 cut(s)	12, 927
EcoRII	CCWGG	3 cut(s)	585, 630, 880
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	221, 610, 806
FatI	CATG	3 cut(s)	217, 606, 802
FauI	CCCGC	1 cut(s)	677
Fnu4HI	GCNGC	5 cut(s)	253, 321, 417, 786, 972
FokI	GGATG	2 cut(s)	5, 259
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	5 cut(s)	253, 321, 417, 786, 972
FspBI	CTAG	3 cut(s)	146, 725, 983
GluI	GCNGC	5 cut(s)	253, 321, 417, 786, 972
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	408, 929, 1014
HapII	CCGG	1 cut(s)	811
HgaI	GACGC	2 cut(s)	422, 691
Hin1II	CATG	3 cut(s)	221, 610, 806
HinfI	GANTC	4 cut(s)	49, 470, 627, 868
HpaII	CCGG	1 cut(s)	811
HphI	GGTGA	3 cut(s)	54, 151, 490
Hpy166II	GTNNAC	2 cut(s)	577, 950
Hpy188I	TCNGA	3 cut(s)	475, 873, 991
Hpy188III	TCNNGA	3 cut(s)	120, 607, 1051
Hpy8I	GTNNAC	2 cut(s)	577, 950
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	4 cut(s)	3, 63, 287, 929
HpyCH4III	ACNGT	1 cut(s)	947
HpyCH4IV	ACGT	2 cut(s)	618, 655
HpyF10VI	GCNNNNNNNGC	6 cut(s)	517, 548, 678, 699, 799, 971
HpyF3I	CTNAG	2 cut(s)	507, 931
HpySE526I	ACGT	2 cut(s)	618, 655
Hsp92II	CATG	3 cut(s)	221, 610, 806
Kzo9I	GATC	4 cut(s)	598, 663, 807, 1075
LmnI	GCTCC	5 cut(s)	317, 368, 424, 884, 938
Lsp1109I	GCAGC	5 cut(s)	239, 332, 428, 772, 958
LweI	GCATC	2 cut(s)	356, 985
MaeI	CTAG	3 cut(s)	146, 725, 983
MaeII	ACGT	2 cut(s)	618, 655
MaeIII	GTNAC	2 cut(s)	220, 703
MalI	GATC	4 cut(s)	600, 665, 809, 1077
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	4 cut(s)	598, 663, 807, 1075
MboII	GAAGA	4 cut(s)	140, 297, 872, 905
MfeI	CAATTG	1 cut(s)	817
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	2 cut(s)	408, 1014
MluCI	AATT	9 cut(s)	95, 180, 353, 639, 684, 817, 903, 909, 1018
MluNI	TGGCCA	2 cut(s)	408, 1014
MlyI	GAGTC	2 cut(s)	636, 877
MmeI	TCCRAC	4 cut(s)	184, 418, 498, 866
MnlI	CCTC	5 cut(s)	75, 573, 617, 713, 1028
Mox20I	TGGCCA	2 cut(s)	408, 1014
MscI	TGGCCA	2 cut(s)	408, 1014
MseI	TTAA	6 cut(s)	75, 183, 209, 642, 902, 1087
MslI	CAYNNNNRTG	2 cut(s)	537, 617
Msp20I	TGGCCA	2 cut(s)	408, 1014
MspI	CCGG	1 cut(s)	811
MspR9I	CCNGG	4 cut(s)	587, 632, 812, 882
MunI	CAATTG	1 cut(s)	817
MvaI	CCWGG	3 cut(s)	587, 632, 882
MwoI	GCNNNNNNNGC	6 cut(s)	517, 548, 678, 699, 799, 971
NciI	CCSGG	1 cut(s)	812
NdeII	GATC	4 cut(s)	598, 663, 807, 1075
NlaIII	CATG	3 cut(s)	221, 610, 806
NlaIV	GGNNCC	4 cut(s)	14, 370, 809, 928
NmuCI	GTSAC	1 cut(s)	703
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	606
PaqCI	CACCTGC	1 cut(s)	533
PciI	ACATGT	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	49, 470
PflMI	CCANNNNNTGG	1 cut(s)	1021
PfoI	TCCNGGA	1 cut(s)	880
PkrI	GCNGC	5 cut(s)	254, 322, 418, 787, 973
PleI	GAGTC	2 cut(s)	635, 876
PmaCI	CACGTG	1 cut(s)	656
PmlI	CACGTG	1 cut(s)	656
PpsI	GAGTC	2 cut(s)	635, 876
Ppu21I	YACGTR	1 cut(s)	656
PpuMI	RGGWCCY	1 cut(s)	12
PscI	ACATGT	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	12
Psp6I	CCWGG	3 cut(s)	585, 630, 880
PspCI	CACGTG	1 cut(s)	656
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	3 cut(s)	585, 630, 880
PspN4I	GGNNCC	4 cut(s)	14, 370, 809, 928
PspPI	GGNCC	4 cut(s)	12, 431, 577, 927
PspPPI	RGGWCCY	1 cut(s)	12
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	807
RseI	CAYNNNNRTG	2 cut(s)	537, 617
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	6 cut(s)	75, 183, 209, 642, 902, 1087
SatI	GCNGC	5 cut(s)	253, 321, 417, 786, 972
Sau3AI	GATC	4 cut(s)	598, 663, 807, 1075
Sau96I	GGNCC	4 cut(s)	12, 431, 577, 927
SchI	GAGTC	2 cut(s)	636, 877
ScrFI	CCNGG	4 cut(s)	587, 632, 812, 882
SduI	GDGCHC	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	356, 985
SfcI	CTRYAG	2 cut(s)	489, 786
SinI	GGWCC	3 cut(s)	12, 431, 577
SmiMI	CAYNNNNRTG	2 cut(s)	537, 617
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	9 cut(s)	95, 180, 353, 639, 684, 817, 903, 909, 1018
SsiI	CCGC	2 cut(s)	282, 670
SspMI	CTAG	3 cut(s)	146, 725, 983
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	4 cut(s)	585, 630, 810, 880
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	947
TaiI	ACGT	2 cut(s)	621, 658
TaqI	TCGA	1 cut(s)	858
TasI	AATT	9 cut(s)	95, 180, 353, 639, 684, 817, 903, 909, 1018
TfiI	GAWTC	2 cut(s)	49, 470
Tru1I	TTAA	6 cut(s)	75, 183, 209, 642, 902, 1087
Tru9I	TTAA	6 cut(s)	75, 183, 209, 642, 902, 1087
TscAI	CASTG	2 cut(s)	312, 597
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	5 cut(s)	252, 320, 416, 785, 971
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	6 cut(s)	162, 261, 346, 436, 623, 906
TspRI	CASTG	2 cut(s)	312, 597
Van91I	CCANNNNNTGG	1 cut(s)	1021
VpaK11BI	GGWCC	3 cut(s)	12, 431, 577
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XspI	CTAG	3 cut(s)	146, 725, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.