Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010900.1

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Reverse (-)

2035 .. 3940

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010900.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgcaaagagaccacaaccgcagtccttacccgcgtaaggcaaagaagtccttttccggaaggcaagaaaagaaccttgtgacgaggttggagctctcctcgtccacagcgcttgaagaagaagtcaggtcacgggactaccccaacgactgcaccccgcgatgctggcacgcctgcgcaaccactcgcccaaaagagactgtttgcacaccagctgatatcgaacaccagcttgggcaagacgcggcaaaggagcttggtcctaatgccattcattgcctgactaacgggaggagtagcacacagcacacccattctctgtccaagtctgttgtcataggcattgtcaagtctctagctgcagagctatgccagcataggatccgggtcaattgcatatccccattcggcattccaaccccaatggtaatcaacgaaatgagtcggatttatccaggagctgatgtagagtggctaatcaaaattttatatcactttggcgccttggaaggagcaaactgtgaacccaatgacattgccaatgctgcactttatctagcttcagatgatgctaagtatgttagtaggcataatatggttgtagatggaggttttacatctgtcaagatttcgaaggtccctgcaccagatcaggtgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

220

Amino Acids

24.34

Weight (kDa)

8.11

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	500
AccII	CGCG	3 cut(s)	34, 160, 245
AccIII	TCCGGA	1 cut(s)	56
AciI	CCGC	4 cut(s)	19, 32, 158, 245
AclWI	GGATC	2 cut(s)	376, 389
AcsI	RAATTY	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	501
AfeI	AGCGCT	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	8 cut(s)	94, 215, 232, 256, 359, 367, 461, 560
AluI	AGCT	8 cut(s)	94, 215, 232, 256, 359, 367, 461, 560
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	3 cut(s)	3, 191, 357
AlwI	GGATC	2 cut(s)	376, 389
AlwNI	CAGNNNCTG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	56
Aor51HI	AGCGCT	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	359, 545
ApoI	RAATTY	1 cut(s)	483
AspLEI	GCGC	3 cut(s)	112, 179, 503
AspS9I	GGNCC	2 cut(s)	260, 637
AsuC2I	CCSGG	1 cut(s)	386
AsuII	TTCGAA	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	260, 637
BamHI	GGATCC	1 cut(s)	381
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	346, 532
BccI	CCATC	1 cut(s)	599
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	3 cut(s)	3, 191, 357
BfaI	CTAG	2 cut(s)	356, 557
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	2 cut(s)	113, 504
BisI	GCNGC	3 cut(s)	246, 360, 546
BlsI	GCNGC	3 cut(s)	247, 361, 547
Bme1390I	CCNGG	2 cut(s)	386, 456
Bme18I	GGWCC	2 cut(s)	260, 637
BmgT120I	GGNCC	2 cut(s)	260, 637
BmiI	GGNNCC	3 cut(s)	383, 502, 639
BmrFI	CCNGG	2 cut(s)	386, 456
BmsI	GCATC	2 cut(s)	152, 559
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu14I	TTCGAA	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	1 cut(s)	504
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	274, 534
BseAI	TCCGGA	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	274, 534
BseRI	GAGGAG	2 cut(s)	88, 307
BseXI	GCAGC	2 cut(s)	346, 532
BsgI	GTGCAG	3 cut(s)	136, 531, 627
Bsh1236I	CGCG	3 cut(s)	34, 160, 245
BshNI	GGYRCC	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	57, 385
BslFI	GGGAC	2 cut(s)	149, 623
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	3 cut(s)	3, 191, 357
BsmFI	GGGAC	2 cut(s)	149, 623
BsmI	GAATGC	1 cut(s)	411
Bso31I	GGTCTC	1 cut(s)	3
Bsp119I	TTCGAA	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	381, 649
BspACI	CCGC	4 cut(s)	19, 32, 158, 245
BspEI	TCCGGA	1 cut(s)	56
BspFNI	CGCG	3 cut(s)	34, 160, 245
BspLI	GGNNCC	3 cut(s)	383, 502, 639
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	376, 389
BspT104I	TTCGAA	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	3
BsrDI	GCAATG	2 cut(s)	274, 534
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	2 cut(s)	381, 649
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	202, 521
BstACI	GRCGYC	1 cut(s)	501
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	4 cut(s)	167, 171, 175, 374
BstDEI	CTNAG	1 cut(s)	573
BstFNI	CGCG	3 cut(s)	34, 160, 245
BstH2I	RGCGCY	2 cut(s)	113, 504
BstHHI	GCGC	3 cut(s)	112, 179, 503
BstKTI	GATC	2 cut(s)	384, 652
BstMAI	GTCTC	3 cut(s)	3, 191, 357
BstMBI	GATC	2 cut(s)	381, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 373, 545
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	384, 454
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	3 cut(s)	34, 160, 245
BstV1I	GCAGC	2 cut(s)	346, 532
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	175
Cac8I	GCNNGC	4 cut(s)	167, 171, 175, 374
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	3 cut(s)	112, 179, 503
Cfr13I	GGNCC	2 cut(s)	260, 637
CseI	GACGC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviJI	RGCY	9 cut(s)	94, 215, 232, 256, 359, 367, 461, 475, 560
CviKI_1	RGCY	9 cut(s)	94, 215, 232, 256, 359, 367, 461, 475, 560
DdeI	CTNAG	1 cut(s)	573
DinI	GGCGCC	1 cut(s)	502
DpnI	GATC	2 cut(s)	383, 651
DpnII	GATC	2 cut(s)	381, 649
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	260, 637
Eco47III	AGCGCT	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	96
EgeI	GGCGCC	1 cut(s)	502
EheI	GGCGCC	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	504
FaiI	YATR	8 cut(s)	338, 370, 378, 398, 490, 579, 591, 596
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	2 cut(s)	149, 623
FauI	CCCGC	2 cut(s)	39, 165
Fnu4HI	GCNGC	3 cut(s)	246, 360, 546
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	246, 360, 546
FspBI	CTAG	2 cut(s)	356, 557
FspI	TGCGCA	1 cut(s)	178
GlaI	GCGC	3 cut(s)	111, 178, 502
GluI	GCNGC	3 cut(s)	246, 360, 546
HaeII	RGCGCY	2 cut(s)	113, 504
HapII	CCGG	2 cut(s)	57, 385
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	3 cut(s)	112, 179, 503
Hin1I	GRCGYC	1 cut(s)	501
Hin6I	GCGC	3 cut(s)	110, 177, 501
HinP1I	GCGC	3 cut(s)	110, 177, 501
HinfI	GANTC	1 cut(s)	442
HpaII	CCGG	2 cut(s)	57, 385
Hpy166II	GTNNAC	2 cut(s)	105, 524
Hpy188I	TCNGA	2 cut(s)	447, 565
Hpy188III	TCNNGA	2 cut(s)	57, 625
Hpy8I	GTNNAC	2 cut(s)	105, 524
HpyAV	CCTTC	3 cut(s)	54, 503, 628
HpyCH4III	ACNGT	2 cut(s)	202, 521
HpyCH4V	TGCA	7 cut(s)	4, 153, 207, 362, 396, 548, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 373, 545
HpyF3I	CTNAG	1 cut(s)	573
Hsp92I	GRCGYC	1 cut(s)	501
HspAI	GCGC	3 cut(s)	110, 177, 501
KasI	GGCGCC	1 cut(s)	500
Kpn2I	TCCGGA	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	381, 649
LmnI	GCTCC	4 cut(s)	91, 253, 458, 512
Lsp1109I	GCAGC	2 cut(s)	346, 532
LweI	GCATC	2 cut(s)	152, 559
MaeI	CTAG	2 cut(s)	356, 557
MaeIII	GTNAC	2 cut(s)	79, 129
MalI	GATC	2 cut(s)	383, 651
MboI	GATC	2 cut(s)	381, 649
MboII	GAAGA	2 cut(s)	128, 131
MfeI	CAATTG	1 cut(s)	391
MflI	RGATCY	1 cut(s)	381
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	391, 483
Mly113I	GGCGCC	1 cut(s)	501
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	3 cut(s)	69, 425, 440
MnlI	CCTC	4 cut(s)	78, 109, 285, 602
MroI	TCCGGA	1 cut(s)	56
MseI	TTAA	1 cut(s)	661
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	57, 385
MspR9I	CCNGG	2 cut(s)	386, 456
MunI	CAATTG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	3 cut(s)	34, 160, 245
MwoI	GCNNNNNNNGC	3 cut(s)	166, 373, 545
NarI	GGCGCC	1 cut(s)	501
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	381, 649
NlaIV	GGNNCC	3 cut(s)	383, 502, 639
NmuCI	GTSAC	2 cut(s)	79, 129
NsbI	TGCGCA	1 cut(s)	178
NspV	TTCGAA	1 cut(s)	632
PctI	GAATGC	1 cut(s)	411
PfoI	TCCNGGA	1 cut(s)	454
PkrI	GCNGC	3 cut(s)	247, 361, 547
PleI	GAGTC	1 cut(s)	450
PluTI	GGCGCC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	450
PpuMI	RGGWCCY	1 cut(s)	637
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	383, 502, 639
PspPI	GGNCC	2 cut(s)	260, 637
PspPPI	RGGWCCY	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	381
PvuII	CAGCTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	661
SatI	GCNGC	3 cut(s)	246, 360, 546
Sau3AI	GATC	2 cut(s)	381, 649
Sau96I	GGNCC	2 cut(s)	260, 637
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	386, 456
SduI	GDGCHC	1 cut(s)	96
SfaNI	GCATC	2 cut(s)	152, 559
SfcI	CTRYAG	1 cut(s)	360
SfoI	GGCGCC	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	632
SinI	GGWCC	2 cut(s)	260, 637
Sse9I	AATT	2 cut(s)	391, 483
SsiI	CCGC	4 cut(s)	19, 32, 158, 245
SspDI	GGCGCC	1 cut(s)	500
SspMI	CTAG	2 cut(s)	356, 557
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	384, 454
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	202, 521
TaqI	TCGA	2 cut(s)	222, 632
TasI	AATT	2 cut(s)	391, 483
TauI	GCSGC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	661
Tru9I	TTAA	1 cut(s)	661
TseFI	GTSAC	2 cut(s)	79, 129
TseI	GCWGC	2 cut(s)	359, 545
Tsp45I	GTSAC	2 cut(s)	79, 129
TspDTI	ATGAA	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	260, 637
XapI	RAATTY	1 cut(s)	483
XspI	CTAG	2 cut(s)	356, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.