Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

79623618 .. 79624597

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036354

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTGGATTGAAGTTTTGAAAAGGAAAAATGTTACCTTTAATAGAGCTTTGGTTTCTCCAAGCTGCTTCAACATGGGGTATTCATCCCAGAGTGCAAGACTTGAAGGCAAGGTGGCACTAATTACTGGAGCAGCAAGTGGCCTAGGAAAGGCAACTGCATCAAAATTCGTCAGCAATTGTGCCAAGGTTGTTCTTGCAGATATCCAACACCAGCTTGGCCAAGACGCGGCAAAGGAGCTTGGTCCTACGCCAGCTTCATTGCCTGTGATGTCACAAAAGAATCCGACATTTCCAATGCTGTTCACCATCTCTAAGCACAGCTTGATATTATGTACGGCAATGCAGGTGTATCTTGTAACTCTCCTCCAAGCATTGTGGACCTTGACCTGGCAGTGTTTGATTGGGTCATGCACATCAATGTCTGAGGAGTACTCGCAGGAATTAAGCACGCTTCGCGTGCATTGTCAAGTCTCTGGCTGCAGAGCTATGCCAGCATGGAATCCGGGTCAATTGCATATCCCCCCATTCGGCATTCCAACCCCAATGGTAATCAACGAAATGAGTCAGATTTATCCAGGAGCTGATGTAGAGAAGCTAATCAAAATTTTACATCACTTTGGCGCCTTAGAAGGAGCAAACTGTGAACCCAATGACATTGCCAATGCTGCACTTTATCTAGCTTCAGATGATGCTAAGTATGTTAGTGGGCATAATTTGGTTGTAGATGGAGGTTTTACAACTGTCAAGATTTTAAAGGCCCCTGCACCAGATCAGGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

261

Amino Acids

28.06

Weight (kDa)

7.59

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 82	1.5e-07	short chain dehydrogenase
adh_short_C2	PF13561	211 - 246	8.7e-10	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	620
AccII	CGCG	2 cut(s)	227, 456
AciI	CCGC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	164, 603
AcuI	CTGAAG	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	2 cut(s)	334, 431
AfiI	CCNNNNNNNGG	4 cut(s)	148, 226, 387, 527
AgsI	TTSAA	4 cut(s)	11, 19, 70, 104
AjnI	CCWGG	2 cut(s)	386, 574
Alw26I	GTCTC	1 cut(s)	475
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	3 cut(s)	139, 217, 756
ApeKI	GCWGC	4 cut(s)	63, 131, 477, 665
ApoI	RAATTY	2 cut(s)	164, 603
AspA2I	CCTAGG	1 cut(s)	142
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	3 cut(s)	242, 378, 757
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	242, 378
AvrII	CCTAGG	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	620
BbvI	GCAGC	4 cut(s)	50, 143, 464, 652
BccI	CCATC	2 cut(s)	314, 719
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	2 cut(s)	388, 576
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	2 cut(s)	143, 677
BfmI	CTRYAG	1 cut(s)	478
BfoI	RGCGCY	1 cut(s)	624
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	5 cut(s)	64, 132, 228, 478, 666
BlnI	CCTAGG	1 cut(s)	142
BlsI	GCNGC	5 cut(s)	65, 133, 229, 479, 667
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	3 cut(s)	388, 504, 576
Bme18I	GGWCC	2 cut(s)	242, 378
BmgT120I	GGNCC	3 cut(s)	242, 378, 757
BmiI	GGNNCC	2 cut(s)	622, 759
BmrFI	CCNGG	3 cut(s)	388, 504, 576
BmsI	GCATC	2 cut(s)	167, 679
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
BpmI	CTGGAG	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	142, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 226, 387, 527
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	3 cut(s)	257, 345, 654
BseBI	CCWGG	2 cut(s)	388, 576
BseDI	CCNNGG	2 cut(s)	142, 183
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	4 cut(s)	148, 226, 387, 527
BseMI	GCAATG	3 cut(s)	257, 345, 654
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	353, 440
BseXI	GCAGC	4 cut(s)	50, 143, 464, 652
BsgI	GTGCAG	2 cut(s)	651, 747
Bsh1236I	CGCG	2 cut(s)	227, 456
BshFI	GGCC	3 cut(s)	141, 219, 758
BshNI	GGYRCC	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	4 cut(s)	148, 226, 387, 527
BsmAI	GTCTC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	3 cut(s)	141, 219, 758
Bsp143I	GATC	1 cut(s)	769
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	3 cut(s)	141, 219, 758
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	2 cut(s)	227, 456
BspLI	GGNNCC	2 cut(s)	622, 759
BspMAI	CTGCAG	1 cut(s)	482
BspMI	ACCTGC	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	620
BsrDI	GCAATG	3 cut(s)	257, 345, 654
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	142, 183
BssMI	GATC	1 cut(s)	769
BssNI	GRCGYC	1 cut(s)	621
BssT1I	CCWWGG	2 cut(s)	142, 183
Bst2UI	CCWGG	2 cut(s)	388, 576
Bst4CI	ACNGT	2 cut(s)	641, 742
BstACI	GRCGYC	1 cut(s)	621
BstC8I	GCNNGC	4 cut(s)	252, 449, 458, 492
BstDEI	CTNAG	4 cut(s)	312, 423, 625, 693
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	2 cut(s)	227, 456
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	1 cut(s)	772
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	769
BstMWI	GCNNNNNNNGC	4 cut(s)	453, 457, 491, 665
BstNI	CCWGG	2 cut(s)	388, 576
BstSCI	CCNGG	3 cut(s)	386, 502, 574
BstSFI	CTRYAG	1 cut(s)	478
BstUI	CGCG	2 cut(s)	227, 456
BstV1I	GCAGC	4 cut(s)	50, 143, 464, 652
BsuRI	GGCC	3 cut(s)	141, 219, 758
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	4 cut(s)	252, 449, 458, 492
CaiI	CAGNNNCTG	1 cut(s)	581
CfoI	GCGC	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	242, 378, 757
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	333, 430
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	3 cut(s)	73, 408, 495
CviQI	GTAC	2 cut(s)	333, 430
DdeI	CTNAG	4 cut(s)	312, 423, 625, 693
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	1 cut(s)	771
DpnII	GATC	1 cut(s)	769
DraI	TTTAAA	1 cut(s)	753
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	142, 183
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	242, 378
Eco57I	CTGAAG	1 cut(s)	666
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRII	CCWGG	2 cut(s)	386, 574
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	142, 183
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
ErhI	CCWWGG	2 cut(s)	142, 183
FaeI	CATG	3 cut(s)	76, 411, 498
FaiI	YATR	8 cut(s)	74, 331, 409, 488, 496, 516, 699, 711
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	3 cut(s)	72, 407, 494
Fnu4HI	GCNGC	5 cut(s)	64, 132, 228, 478, 666
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	5 cut(s)	64, 132, 228, 478, 666
FspBI	CTAG	2 cut(s)	143, 677
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	5 cut(s)	64, 132, 228, 478, 666
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	141, 219, 758
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	623
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	3 cut(s)	76, 411, 498
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HinfI	GANTC	3 cut(s)	280, 499, 562
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	303, 378, 644
Hpy188I	TCNGA	4 cut(s)	285, 424, 567, 685
Hpy188III	TCNNGA	1 cut(s)	745
Hpy8I	GTNNAC	3 cut(s)	303, 378, 644
HpyAV	CCTTC	2 cut(s)	98, 623
HpyCH4III	ACNGT	2 cut(s)	641, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	453, 457, 491, 665
HpyF3I	CTNAG	4 cut(s)	312, 423, 625, 693
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	3 cut(s)	76, 411, 498
HspAI	GCGC	1 cut(s)	621
KasI	GGCGCC	1 cut(s)	620
Kzo9I	GATC	1 cut(s)	769
LmnI	GCTCC	4 cut(s)	128, 235, 578, 632
Lsp1109I	GCAGC	4 cut(s)	50, 143, 464, 652
LweI	GCATC	2 cut(s)	167, 679
MaeI	CTAG	2 cut(s)	143, 677
MaeIII	GTNAC	3 cut(s)	31, 270, 355
MalI	GATC	1 cut(s)	771
MboI	GATC	1 cut(s)	769
MfeI	CAATTG	2 cut(s)	175, 509
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	7 cut(s)	120, 164, 175, 440, 509, 603, 712
MluNI	TGGCCA	1 cut(s)	219
Mly113I	GGCGCC	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	3 cut(s)	229, 308, 560
MnlI	CCTC	3 cut(s)	374, 418, 722
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	4 cut(s)	39, 443, 752, 781
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	3 cut(s)	388, 504, 576
MunI	CAATTG	2 cut(s)	175, 509
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	2 cut(s)	388, 576
MvnI	CGCG	2 cut(s)	227, 456
MwoI	GCNNNNNNNGC	4 cut(s)	453, 457, 491, 665
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	1 cut(s)	504
NdeII	GATC	1 cut(s)	769
NlaIII	CATG	3 cut(s)	76, 411, 498
NlaIV	GGNNCC	2 cut(s)	622, 759
NmuCI	GTSAC	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	2 cut(s)	280, 499
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	5 cut(s)	65, 133, 229, 479, 667
PleI	GAGTC	1 cut(s)	570
PluTI	GGCGCC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	386, 574
PspGI	CCWGG	2 cut(s)	386, 574
PspN4I	GGNNCC	2 cut(s)	622, 759
PspPI	GGNCC	3 cut(s)	242, 378, 757
PstI	CTGCAG	1 cut(s)	482
PstNI	CAGNNNCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	334, 431
RsaNI	GTAC	2 cut(s)	333, 430
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	4 cut(s)	39, 443, 752, 781
SatI	GCNGC	5 cut(s)	64, 132, 228, 478, 666
Sau3AI	GATC	1 cut(s)	769
Sau96I	GGNCC	3 cut(s)	242, 378, 757
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	388, 504, 576
SfaNI	GCATC	2 cut(s)	167, 679
SfcI	CTRYAG	1 cut(s)	478
SfoI	GGCGCC	1 cut(s)	622
SinI	GGWCC	2 cut(s)	242, 378
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	7 cut(s)	120, 164, 175, 440, 509, 603, 712
SsiI	CCGC	1 cut(s)	227
SspDI	GGCGCC	1 cut(s)	620
SspMI	CTAG	2 cut(s)	143, 677
StyD4I	CCNGG	3 cut(s)	386, 502, 574
StyI	CCWWGG	2 cut(s)	142, 183
TaaI	ACNGT	2 cut(s)	641, 742
TasI	AATT	7 cut(s)	120, 164, 175, 440, 509, 603, 712
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	2 cut(s)	280, 499
Tru1I	TTAA	4 cut(s)	39, 443, 752, 781
Tru9I	TTAA	4 cut(s)	39, 443, 752, 781
TscAI	CASTG	1 cut(s)	398
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	4 cut(s)	63, 131, 477, 665
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	2 cut(s)	72, 246
TspRI	CASTG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	242, 378
XagI	CCTNNNNNAGG	1 cut(s)	146
XapI	RAATTY	2 cut(s)	164, 603
XcmI	CCANNNNNNNNNTGG	1 cut(s)	212
XmaJI	CCTAGG	1 cut(s)	142
XspI	CTAG	2 cut(s)	143, 677
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.