Rroxscaffold_1G00008190

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004022
Physical Location & Seq
Reverse (-)
10316176 .. 10324069
7894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008190.1

Sequence Viewer

Length: 285 bp
ATGGGGAACATTGTTGGTCCAAAACTTGAAGGCAAGGTGGCACTAATTACTGGAGCAGCAAGTGGCCTAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGTGCCAAGGTTGTTCTTGCAGATATCGAACACCAGCTTGGTCAAGATGCGGCAAAGGAGCTTGGTCCTAAGGCCAGCTTCATTGCCTGTGATGTCACAAAAGAATCCGACATTTCCAATGCTGTGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGTACAGAAATGCAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

94

Amino Acids

9.5

Weight (kDa)

5.68

Isoelectric Point (pI)

28.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 12 - 76 8.6e-15 short chain dehydrogenase
adh_short_C2 PF13561 18 - 76 1.6e-10 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 4 cut(s) 139, 163, 180, 255
AluI AGCT 4 cut(s) 139, 163, 180, 255
AoxI GGCC 2 cut(s) 64, 174
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 89
AspA2I CCTAGG 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 17, 167
AsuHPI GGTGA 1 cut(s) 225
AvaII GGWCC 2 cut(s) 17, 167
AvrII CCTAGG 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 244
BfaI CTAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 57, 153
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 2 cut(s) 58, 154
Bme18I GGWCC 2 cut(s) 17, 167
BmgT120I GGNCC 2 cut(s) 17, 167
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 2 cut(s) 92, 139
BpmI CTGGAG 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 67, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 2 cut(s) 106, 183
BseDI CCNNGG 2 cut(s) 67, 108
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 2 cut(s) 106, 183
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 68
BshFI GGCC 2 cut(s) 66, 176
BshNI GGYRCC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 2 cut(s) 66, 176
Bsp1407I TGTACA 1 cut(s) 266
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 66, 176
BspLI GGNNCC 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 106, 183
BsrGI TGTACA 1 cut(s) 266
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 67, 108
BssT1I CCWWGG 2 cut(s) 67, 108
BstAUI TGTACA 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 178, 253
BstDEI CTNAG 2 cut(s) 171, 242
BstENI CCTNNNNNAGG 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 66, 176
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 2 cut(s) 178, 253
Cfr13I GGNCC 2 cut(s) 17, 167
Csp6I GTAC 1 cut(s) 267
CviJI RGCY 7 cut(s) 66, 139, 163, 176, 180, 251, 255
CviKI_1 RGCY 7 cut(s) 66, 139, 163, 176, 180, 251, 255
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 171, 242
Eco130I CCWWGG 2 cut(s) 67, 108
Eco32I GATATC 1 cut(s) 127
Eco47I GGWCC 2 cut(s) 17, 167
Eco81I CCTNAGG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 127
EcoT14I CCWWGG 2 cut(s) 67, 108
ErhI CCWWGG 2 cut(s) 67, 108
FaiI YATR 1 cut(s) 265
FalI AAGNNNNNCTT 2 cut(s) 164, 196
Fnu4HI GCNGC 2 cut(s) 57, 153
Fsp4HI GCNGC 2 cut(s) 57, 153
FspBI CTAG 1 cut(s) 68
GluI GCNGC 2 cut(s) 57, 153
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 2 cut(s) 66, 176
HinfI GANTC 1 cut(s) 206
HphI GGTGA 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 83, 122, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 2 cut(s) 171, 242
LmnI GCTCC 2 cut(s) 53, 160
LpnPI CCDG 6 cut(s) 36, 149, 190, 202, 263, 265
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 92, 139
MaeI CTAG 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 196
MluCI AATT 2 cut(s) 45, 89
MmeI TCCRAC 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 252
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 196
PaqCI CACCTGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 58, 154
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 17, 167
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SatI GCNGC 2 cut(s) 57, 153
Sau96I GGNCC 2 cut(s) 17, 167
SetI ASST 7 cut(s) 39, 114, 141, 165, 182, 257, 282
SfaNI GCATC 2 cut(s) 92, 139
SinI GGWCC 2 cut(s) 17, 167
Sse9I AATT 2 cut(s) 45, 89
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 68
StyI CCWWGG 2 cut(s) 67, 108
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 45, 89
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 206
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 82, 172
VpaK11BI GGWCC 2 cut(s) 17, 167
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 89
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.