RchiOBHm_Chr5g0073031

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004022
Physical Location & Seq
Forward (+)
79093310 .. 79093534
225 bp
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UTR
Exon/CDS
Intron
PRQ34794

Sequence Viewer

Length: 225 bp
ATGAGTCAGATTTATCCAGGAGCTGATGTAGAGAAGCTAATCAAAATTTTACATCACTTTGGCGCTTTAGAAGGAGCAAACTGTGAACCCAATGGCATTGCCAATGCTGCACTTTATCTAGCTTCAGATGATGCTAAGTATGTTAGTGGGCATAATTTGGTTGTAGATGGAGGTTTTACATCTGTCAAGATTTCAAAGGCCCCTGCACCAGATCAGGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

74

Amino Acids

7.75

Weight (kDa)

5.35

Isoelectric Point (pI)

19.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 25 - 60 8.4e-10 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 195
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 23, 37, 122
AluI AGCT 3 cut(s) 23, 37, 122
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 45
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 119
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 12, 42
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 94
BsgI GTGCAG 2 cut(s) 93, 189
BshFI GGCC 1 cut(s) 200
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 211
BspANI GGCC 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 96
BssMI GATC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 200
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 199
CviJI RGCY 4 cut(s) 23, 37, 122, 200
CviKI_1 RGCY 4 cut(s) 23, 37, 122, 200
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 16
FaiI YATR 2 cut(s) 141, 153
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 119
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 200
HhaI GCGC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 9, 127
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 110, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 135
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 20, 74
LpnPI CCDG 4 cut(s) 3, 30, 200, 216
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MluCI AATT 2 cut(s) 45, 154
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 1 cut(s) 164
MseI TTAA 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 201
PfoI TCCNGGA 1 cut(s) 16
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 23
SaqAI TTAA 1 cut(s) 223
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 18
SetI ASST 5 cut(s) 25, 39, 124, 175, 219
SfaNI GCATC 1 cut(s) 121
SgeI CNNG 6 cut(s) 29, 30, 131, 199, 215, 221
Sse9I AATT 2 cut(s) 45, 154
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 83
TasI AATT 2 cut(s) 45, 154
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TseI GCWGC 1 cut(s) 107
XapI RAATTY 1 cut(s) 45
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.