RchiOBHm_Chr5g0073011

Enoyl-(Acyl carrier protein) reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004022
Physical Location & Seq
Forward (+)
79090320 .. 79090695
376 bp
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UTR
Exon/CDS
Intron
PRQ34792

Sequence Viewer

Length: 288 bp
ATGGGATATTCATCCCAGAGTGCAAGACTTGAAGGCAAGGTGGCACTAATTACTGGAGCAGCAAGCGGCCTAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGTGCCAAGGTTGTTCTTGCAGATATCGAACACCAGCTTGGGCAAGACGCGGCAAAGGAGATTGGTCCTAATGCCAGCTTCATTGCCTGTGATGTCACAAAAGAATCCGACATTTCCAATGCTGTGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGTACGGAAATGCAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

95

Amino Acids

9.66

Weight (kDa)

5.15

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 13 - 77 1.1e-14 short chain dehydrogenase
adh_short_C2 PF13561 19 - 77 2.5e-10 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 66, 155
AcsI RAATTY 1 cut(s) 92
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 32
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 3 cut(s) 142, 183, 258
AluI AGCT 3 cut(s) 142, 183, 258
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 92
AspA2I CCTAGG 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 228
AvaII GGWCC 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 70
BanI GGYRCC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 247
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 3 cut(s) 60, 67, 156
BlnI CCTAGG 1 cut(s) 70
BlsI GCNGC 3 cut(s) 61, 68, 157
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 70, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 2 cut(s) 109, 186
Bse8I GATNNNNATC 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 70, 111
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 109, 186
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 69
BspACI CCGC 2 cut(s) 66, 155
BspANI GGCC 1 cut(s) 69
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 2 cut(s) 109, 186
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 2 cut(s) 70, 111
BssT1I CCWWGG 2 cut(s) 70, 111
BstC8I GCNNGC 3 cut(s) 64, 181, 256
BstDEI CTNAG 1 cut(s) 245
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 255
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 64, 181, 256
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 270
CviJI RGCY 5 cut(s) 69, 142, 183, 254, 258
CviKI_1 RGCY 5 cut(s) 69, 142, 183, 254, 258
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 70, 111
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 70, 111
ErhI CCWWGG 2 cut(s) 70, 111
FaiI YATR 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 60, 67, 156
Fsp4HI GCNGC 3 cut(s) 60, 67, 156
FspBI CTAG 1 cut(s) 71
GluI GCNGC 3 cut(s) 60, 67, 156
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 69
HgaI GACGC 1 cut(s) 161
HinfI GANTC 1 cut(s) 209
HphI GGTGA 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 4 cut(s) 23, 86, 125, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 255
HpyF3I CTNAG 1 cut(s) 245
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 7 cut(s) 29, 39, 152, 193, 205, 266, 268
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 199
MluCI AATT 2 cut(s) 48, 92
MmeI TCCRAC 1 cut(s) 237
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 255
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 61, 68, 157
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SatI GCNGC 3 cut(s) 60, 67, 156
Sau96I GGNCC 1 cut(s) 170
SetI ASST 6 cut(s) 42, 117, 144, 185, 260, 285
SfaNI GCATC 1 cut(s) 95
SinI GGWCC 1 cut(s) 170
Sse9I AATT 2 cut(s) 48, 92
SsiI CCGC 2 cut(s) 66, 155
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 2 cut(s) 70, 111
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 48, 92
TauI GCSGC 2 cut(s) 69, 158
TfiI GAWTC 1 cut(s) 209
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 85, 175
TspGWI ACGGA 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 70
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.