Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

1392121 .. 1393842

Gene Structure 1722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTCCCTCTATATCTATATAAGACGCAAACACAGGGACCATTCTCTTCAAAGACGAGAAATTATAAGTTAGGAAACGACAAAGACCGATCTATATATATATCTCGGAGCAATATAGCTAGCACAAACATGTTTCAGATTGGAAAAAACGCATTATTCAAGAATGTGAGCAAGAACTTCCTTATCAAGGGAATATCCTCATCCTCATCATCTCATTCAACTTCAAGGAAGCTAGAAGGTAAAGTAGCACTCATCACTGGAGGAGCAAGTGGGATTGGCAAAGCAACAGCCGGAAAATTCATCAGTCATGGAGCCAAAGTTATCATTGCCGATATCCAACCGCAGATTGGGCGAGAAACCGAGCAAGAACTCGGTCCCAGTTGTGCTTACTTCCCATGCGATGTGACCAAAGAATCAGACATTGCTAACGCAGTTGACTTCGCTGTCTCGCTCCATACAAAGCTCGACATTATGTACAACAATGCTGGTATTCCCTGCAAAACGCCTCCTAGTATCGTTGATCTTGATCTCAATGTTTTCGACAAGGTAATCAACACAAATGTCCGTGGAGTCATGGCAGGAATCAAACATGCTGCTCGTGTGATGATCCCGCGTAACTCTGGATCCATCATTTGTGCAGGGAGTGTCACGGGGATGATGGGCGGTTTAGCCCAACATACTTACAGCGTCTCAAAATCCGCTGTTATCGGAATTGTAAGATCAACAGCTTCAGAACTATGCAAGCACAGGATCCGGGTCAACTGCATTTCTCCTTTTGCGATCACAACATCATTCGTGATGGATGAGATGCGACAGATTTACCCCGGTGTTGATGACTCAAGGCTGATCCAGATAGTGCAGAGTACAGGAGTGTTAAATGGAGAGGTTTGTGAACCAACCGATGTAGCTAATGCAGCGGTGTATCTCGCTTCCGATGATTCAAAGTATGTAAATGGGCATAATCTGGTGGTAGATGGAGGATTCACAACTGTAAAGACGTTAGATTTCCCTGCACCTGACCAAGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

343

Amino Acids

36.83

Weight (kDa)

9.05

Isoelectric Point (pI)

23.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	81 - 269	2.5e-47	short chain dehydrogenase
KR	PF08659	83 - 241	1.5e-08	KR domain
adh_short_C2	PF13561	89 - 329	1.9e-56	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AasI	GACNNNNNNGTC	1 cut(s)	443
AccII	CGCG	1 cut(s)	613
AciI	CCGC	5 cut(s)	341, 611, 663, 699, 917
AclWI	GGATC	6 cut(s)	601, 618, 631, 745, 758, 841
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	476, 865
AfiI	CCNNNNNNNGG	2 cut(s)	187, 347
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	5 cut(s)	51, 160, 219, 225, 942
AluBI	AGCT	5 cut(s)	119, 232, 463, 728, 908
AluI	AGCT	5 cut(s)	119, 232, 463, 728, 908
Alw26I	GTCTC	2 cut(s)	451, 694
AlwI	GGATC	6 cut(s)	601, 618, 631, 745, 758, 841
ApeKI	GCWGC	2 cut(s)	593, 914
ApoI	RAATTY	1 cut(s)	296
AspS9I	GGNCC	2 cut(s)	38, 374
AsuC2I	CCSGG	2 cut(s)	755, 825
AsuNHI	GCTAGC	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	38, 374
BamHI	GGATCC	2 cut(s)	623, 750
BauI	CACGAG	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	580, 926
BccI	CCATC	4 cut(s)	635, 652, 793, 968
BcnI	CCSGG	2 cut(s)	755, 825
BcoDI	GTCTC	2 cut(s)	451, 694
BfaI	CTAG	3 cut(s)	120, 233, 510
BisI	GCNGC	2 cut(s)	594, 915
BlsI	GCNGC	2 cut(s)	595, 916
Bme1390I	CCNGG	2 cut(s)	755, 825
Bme18I	GGWCC	2 cut(s)	38, 374
BmgT120I	GGNCC	2 cut(s)	38, 374
BmiI	GGNNCC	5 cut(s)	39, 313, 376, 625, 752
BmrFI	CCNGG	2 cut(s)	755, 825
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	798
BmtI	GCTAGC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	823
BpuMI	CCSGG	2 cut(s)	755, 825
BsaBI	GATNNNNATC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	565, 823
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 347
Bse1I	ACTGG	2 cut(s)	262, 378
Bse3DI	GCAATG	2 cut(s)	324, 420
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	565, 823
BseGI	GGATG	3 cut(s)	200, 660, 808
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	187, 347
BseMI	GCAATG	2 cut(s)	324, 420
BseNI	ACTGG	2 cut(s)	262, 378
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	580, 926
BsgI	GTGCAG	3 cut(s)	657, 878, 996
Bsh1236I	CGCG	1 cut(s)	613
BsiSI	CCGG	3 cut(s)	291, 754, 825
BslFI	GGGAC	2 cut(s)	51, 360
BslI	CCNNNNNNNGG	2 cut(s)	187, 347
BsmAI	GTCTC	2 cut(s)	451, 694
BsmBI	CGTCTC	1 cut(s)	694
BsmFI	GGGAC	2 cut(s)	51, 360
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
BspACI	CCGC	5 cut(s)	341, 611, 663, 699, 917
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	5 cut(s)	39, 313, 376, 625, 752
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	6 cut(s)	601, 618, 631, 745, 758, 841
BsrDI	GCAATG	2 cut(s)	324, 420
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	262, 378
BssECI	CCNNGG	2 cut(s)	565, 823
BssMI	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst4CI	ACNGT	1 cut(s)	991
Bst6I	CTCTTC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	121, 743
BstDSI	CCRYGG	1 cut(s)	565
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstF5I	GGATG	3 cut(s)	200, 660, 808
BstFNI	CGCG	1 cut(s)	613
BstKTI	GATC	9 cut(s)	92, 523, 529, 609, 626, 722, 753, 783, 849
BstMAI	GTCTC	2 cut(s)	451, 694
BstMBI	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 914
BstNSI	RCATGY	2 cut(s)	133, 593
BstSCI	CCNGG	2 cut(s)	753, 823
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	2 cut(s)	580, 926
BstX2I	RGATCY	2 cut(s)	623, 750
BstYI	RGATCY	2 cut(s)	623, 750
BtgI	CCRYGG	1 cut(s)	565
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	200, 660, 808
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	121, 743
Cfr13I	GGNCC	2 cut(s)	38, 374
CseI	GACGC	2 cut(s)	34, 676
Csp6I	GTAC	2 cut(s)	475, 864
CviAII	CATG	5 cut(s)	130, 308, 396, 574, 590
CviJI	RGCY	9 cut(s)	119, 232, 290, 314, 463, 671, 728, 844, 908
CviKI_1	RGCY	9 cut(s)	119, 232, 290, 314, 463, 671, 728, 844, 908
CviQI	GTAC	2 cut(s)	475, 864
DpnI	GATC	9 cut(s)	91, 522, 528, 608, 625, 721, 752, 782, 848
DpnII	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
DrdI	GACNNNNNNGTC	1 cut(s)	443
DseDI	GACNNNNNNGTC	1 cut(s)	443
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	38, 374
Eco57I	CTGAAG	1 cut(s)	714
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	694
FaeI	CATG	5 cut(s)	133, 311, 399, 577, 593
FaqI	GGGAC	2 cut(s)	51, 360
FatI	CATG	5 cut(s)	129, 307, 395, 573, 589
FauI	CCCGC	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	594, 915
FokI	GGATG	3 cut(s)	187, 667, 815
Fsp4HI	GCNGC	2 cut(s)	594, 915
FspBI	CTAG	3 cut(s)	120, 233, 510
GluI	GCNGC	2 cut(s)	594, 915
GsuI	CTGGAG	1 cut(s)	279
HapII	CCGG	3 cut(s)	291, 754, 825
HgaI	GACGC	2 cut(s)	34, 676
Hin1II	CATG	5 cut(s)	133, 311, 399, 577, 593
HincII	GTYRAC	2 cut(s)	436, 760
HindII	GTYRAC	2 cut(s)	436, 760
HinfI	GANTC	6 cut(s)	413, 570, 582, 836, 938, 981
HpaII	CCGG	3 cut(s)	291, 754, 825
Hpy166II	GTNNAC	3 cut(s)	436, 760, 893
Hpy188I	TCNGA	6 cut(s)	108, 138, 418, 710, 733, 934
Hpy188III	TCNNGA	5 cut(s)	160, 524, 621, 796, 850
Hpy8I	GTNNAC	3 cut(s)	436, 760, 893
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	991
HpyCH4IV	ACGT	1 cut(s)	998
HpyCH4V	TGCA	7 cut(s)	498, 638, 741, 765, 859, 914, 1013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 914
HpySE526I	ACGT	1 cut(s)	998
Hsp92II	CATG	5 cut(s)	133, 311, 399, 577, 593
Kzo9I	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
LmnI	GCTCC	4 cut(s)	108, 263, 311, 456
Lsp1109I	GCAGC	2 cut(s)	580, 926
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	3 cut(s)	120, 233, 510
MaeII	ACGT	1 cut(s)	998
MaeIII	GTNAC	3 cut(s)	403, 614, 646
MalI	GATC	9 cut(s)	91, 522, 528, 608, 625, 721, 752, 782, 848
MboI	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
MboII	GAAGA	1 cut(s)	39
MflI	RGATCY	2 cut(s)	623, 750
MluCI	AATT	3 cut(s)	61, 296, 711
MlyI	GAGTC	2 cut(s)	579, 830
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	7 cut(s)	18, 208, 214, 254, 516, 877, 971
MseI	TTAA	1 cut(s)	875
MslI	CAYNNNNRTG	2 cut(s)	128, 653
MspA1I	CMGCKG	2 cut(s)	701, 917
MspI	CCGG	3 cut(s)	291, 754, 825
MspR9I	CCNGG	2 cut(s)	755, 825
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	2 cut(s)	349, 914
NciI	CCSGG	2 cut(s)	755, 825
NdeII	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	5 cut(s)	133, 311, 399, 577, 593
NlaIV	GGNNCC	5 cut(s)	39, 313, 376, 625, 752
NmuCI	GTSAC	2 cut(s)	403, 646
NspI	RCATGY	2 cut(s)	133, 593
PciI	ACATGT	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	413, 582, 938, 981
PkrI	GCNGC	2 cut(s)	595, 916
PleI	GAGTC	2 cut(s)	578, 830
PpsI	GAGTC	2 cut(s)	578, 830
PscI	ACATGT	1 cut(s)	129
PsiI	TTATAA	1 cut(s)	66
PspN4I	GGNNCC	5 cut(s)	39, 313, 376, 625, 752
PspPI	GGNCC	2 cut(s)	38, 374
PsuI	RGATCY	2 cut(s)	623, 750
RsaI	GTAC	2 cut(s)	476, 865
RsaNI	GTAC	2 cut(s)	475, 864
RseI	CAYNNNNRTG	2 cut(s)	128, 653
SaqAI	TTAA	1 cut(s)	875
SatI	GCNGC	2 cut(s)	594, 915
Sau3AI	GATC	9 cut(s)	89, 520, 526, 606, 623, 719, 750, 780, 846
Sau96I	GGNCC	2 cut(s)	38, 374
SchI	GAGTC	2 cut(s)	579, 830
ScrFI	CCNGG	2 cut(s)	755, 825
SfaNI	GCATC	1 cut(s)	798
SinI	GGWCC	2 cut(s)	38, 374
SmiMI	CAYNNNNRTG	2 cut(s)	128, 653
SmlI	CTYRAG	1 cut(s)	838
SmoI	CTYRAG	1 cut(s)	838
Sse9I	AATT	3 cut(s)	61, 296, 711
SsiI	CCGC	5 cut(s)	341, 611, 663, 699, 917
SspMI	CTAG	3 cut(s)	120, 233, 510
StyD4I	CCNGG	2 cut(s)	753, 823
TaaI	ACNGT	1 cut(s)	991
TaiI	ACGT	1 cut(s)	1001
TaqI	TCGA	2 cut(s)	465, 540
TaqII	GACCGA	2 cut(s)	102, 362
TasI	AATT	3 cut(s)	61, 296, 711
TatI	WGTACW	2 cut(s)	474, 863
TfiI	GAWTC	4 cut(s)	413, 582, 938, 981
Tru1I	TTAA	1 cut(s)	875
Tru9I	TTAA	1 cut(s)	875
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	403, 646
TseI	GCWGC	2 cut(s)	593, 914
Tsp45I	GTSAC	2 cut(s)	403, 646
TspDTI	ATGAA	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	38, 374
XagI	CCTNNNNNAGG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	2 cut(s)	133, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XspI	CTAG	3 cut(s)	120, 233, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.