Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Reverse (-)

10425446 .. 10432637

Gene Structure 7192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCACTACTATGAGGATACCGATTTTGATGAAAGCGAAAAACGAGAACTAATAGGGATTGAAGTTTTGAACAAGAAAAATGTTGCCTTTAATAGAGCTTTGGTTTCTCCAATCTCCTTCAAGATGGGATATTCATCCGAGAGTGCAAGACTTGAAGGCAAGGTGGCACTAATTACTGGAGCAGCAAGTGGCATAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGTGCCAAGGTTGTTCTTGCGGATATCGAACACCAGCTTGGGCAAGATGCGGCAAAGGAGCTTGGTCCTAACACCAGCTTCATTGCCTGTGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGTACAGAAATGCAGGTGTAGCTTGTAACTCTCCTCCAATAATTGTGGACCTTGACCTGGCAGTGTTTGATCGGGTCATGAACATCAATGTCCGAGGAGTACTGGCAGGAATTAAGCACGCTTCGCATGTGATGATCCCTCGCAAAACTGGCTCAATTCTCTGCACACCCAGCATCGCAGGACTAACGGGAGGAGTAGCACAGCACACCTATTCTCTGTCCAAGTCTGCTGTCATAGGCATTGTCAAGTCTCTGGCTGCAGAGCTATGCCAGCATGGGATCCGGGTCAATTACATATCCCCATTCGGCATTCCAACCCCAATGGTAATCAAGGAAATGAGTCGGATTTATCCAGGAGCTGATGTAGAGAGGCTAATCAAAATTTTATATCACTTTGGCGCCTTGGAAGGAGCAAATTGTGAACCCAATGACATTGCCAATGCTGCACTTTATCTAGCTTCAGATGATGCTAAGTATGTTAGTAGGCATAATATGGTTGTAGATGGAGGTTTTACATCTGTCAAGATTTCGAAGGTCCCTGCACCAGATCAGGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

304

Amino Acids

32.62

Weight (kDa)

7.11

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	54 - 229	1.1e-37	short chain dehydrogenase
adh_short_C2	PF13561	60 - 290	4.7e-44	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
Acc36I	ACCTGC	1 cut(s)	359
AccB1I	GGYRCC	2 cut(s)	230, 752
AciI	CCGC	2 cut(s)	248, 278
AclWI	GGATC	3 cut(s)	484, 628, 641
AcsI	RAATTY	2 cut(s)	215, 735
AcuI	CTGAAG	1 cut(s)	798
AcyI	GRCGYC	1 cut(s)	753
AfaI	GTAC	2 cut(s)	359, 456
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	4 cut(s)	62, 70, 121, 155
AjnI	CCWGG	2 cut(s)	411, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	9 cut(s)	98, 265, 289, 306, 346, 377, 619, 713, 812
AluI	AGCT	9 cut(s)	98, 265, 289, 306, 346, 377, 619, 713, 812
Alw26I	GTCTC	1 cut(s)	609
AlwI	GGATC	3 cut(s)	484, 628, 641
AlwNI	CAGNNNCTG	1 cut(s)	713
ApeKI	GCWGC	3 cut(s)	182, 611, 797
ApoI	RAATTY	2 cut(s)	215, 735
AspLEI	GCGC	1 cut(s)	755
AspS9I	GGNCC	3 cut(s)	293, 403, 889
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	316
AsuII	TTCGAA	1 cut(s)	884
AvaII	GGWCC	3 cut(s)	293, 403, 889
BamHI	GGATCC	1 cut(s)	633
BanI	GGYRCC	2 cut(s)	230, 752
BbvI	GCAGC	3 cut(s)	194, 598, 784
BccI	CCATC	3 cut(s)	118, 335, 851
BciT130I	CCWGG	2 cut(s)	413, 708
BciVI	GTATCC	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	756
BfuAI	ACCTGC	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	4 cut(s)	183, 279, 612, 798
BlsI	GCNGC	4 cut(s)	184, 280, 613, 799
BmcAI	AGTACT	1 cut(s)	456
Bme1390I	CCNGG	3 cut(s)	413, 638, 708
Bme18I	GGWCC	3 cut(s)	293, 403, 889
BmgT120I	GGNCC	3 cut(s)	293, 403, 889
BmiI	GGNNCC	4 cut(s)	232, 635, 754, 891
BmrFI	CCNGG	3 cut(s)	413, 638, 708
BmsI	GCATC	4 cut(s)	218, 265, 537, 811
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	884
BpuMI	CCSGG	1 cut(s)	638
BsaBI	GATNNNNATC	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	234, 448, 756
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	3 cut(s)	181, 462, 508
Bse3DI	GCAATG	3 cut(s)	232, 309, 786
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	413, 708
BseDI	CCNNGG	3 cut(s)	234, 448, 756
BseGI	GGATG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	3 cut(s)	232, 309, 786
BseNI	ACTGG	3 cut(s)	181, 462, 508
BseRI	GAGGAG	3 cut(s)	378, 465, 561
BseXI	GCAGC	3 cut(s)	194, 598, 784
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	3 cut(s)	502, 783, 879
BshNI	GGYRCC	2 cut(s)	230, 752
BsiSI	CCGG	1 cut(s)	637
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	875
BsmI	GAATGC	1 cut(s)	663
Bsp119I	TTCGAA	1 cut(s)	884
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	424, 489, 633, 901
BspACI	CCGC	2 cut(s)	248, 278
BspHI	TCATGA	1 cut(s)	432
BspLI	GGNNCC	4 cut(s)	232, 635, 754, 891
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	3 cut(s)	484, 628, 641
BspT104I	TTCGAA	1 cut(s)	884
BspT107I	GGYRCC	2 cut(s)	230, 752
BsrDI	GCAATG	3 cut(s)	232, 309, 786
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	181, 462, 508
BssECI	CCNNGG	3 cut(s)	234, 448, 756
BssMI	GATC	4 cut(s)	424, 489, 633, 901
BssNI	GRCGYC	1 cut(s)	753
BssT1I	CCWWGG	2 cut(s)	234, 756
Bst2UI	CCWGG	2 cut(s)	413, 708
BstACI	GRCGYC	1 cut(s)	753
BstAUI	TGTACA	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	884
BstC8I	GCNNGC	3 cut(s)	344, 474, 626
BstDEI	CTNAG	2 cut(s)	333, 825
BstF5I	GGATG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	756
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	4 cut(s)	427, 492, 636, 904
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	4 cut(s)	424, 489, 633, 901
BstMWI	GCNNNNNNNGC	7 cut(s)	343, 374, 478, 504, 525, 625, 797
BstNI	CCWGG	2 cut(s)	413, 708
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	3 cut(s)	411, 636, 706
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	194, 598, 784
BstX2I	RGATCY	1 cut(s)	633
BstYI	RGATCY	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	3 cut(s)	344, 474, 626
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	432
CfoI	GCGC	1 cut(s)	755
Cfr13I	GGNCC	3 cut(s)	293, 403, 889
Csp6I	GTAC	2 cut(s)	358, 455
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	3 cut(s)	433, 482, 629
CviQI	GTAC	2 cut(s)	358, 455
DdeI	CTNAG	2 cut(s)	333, 825
DinI	GGCGCC	1 cut(s)	754
DpnI	GATC	4 cut(s)	426, 491, 635, 903
DpnII	GATC	4 cut(s)	424, 489, 633, 901
Eco130I	CCWWGG	2 cut(s)	234, 756
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	3 cut(s)	293, 403, 889
Eco57I	CTGAAG	1 cut(s)	798
EcoO109I	RGGNCCY	1 cut(s)	889
EcoRII	CCWGG	2 cut(s)	411, 706
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	234, 756
EgeI	GGCGCC	1 cut(s)	754
EheI	GGCGCC	1 cut(s)	754
ErhI	CCWWGG	2 cut(s)	234, 756
FaeI	CATG	3 cut(s)	436, 485, 632
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	3 cut(s)	432, 481, 628
Fnu4HI	GCNGC	4 cut(s)	183, 279, 612, 798
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	4 cut(s)	183, 279, 612, 798
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	4 cut(s)	183, 279, 612, 798
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	756
HapII	CCGG	1 cut(s)	637
HhaI	GCGC	1 cut(s)	755
Hin1I	GRCGYC	1 cut(s)	753
Hin1II	CATG	3 cut(s)	436, 485, 632
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HinfI	GANTC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	637
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	2 cut(s)	403, 776
Hpy188I	TCNGA	4 cut(s)	139, 449, 699, 817
Hpy188III	TCNNGA	3 cut(s)	121, 433, 877
Hpy8I	GTNNAC	2 cut(s)	403, 776
HpyAV	CCTTC	4 cut(s)	127, 149, 755, 880
HpyCH4V	TGCA	8 cut(s)	4, 146, 209, 368, 519, 614, 800, 896
HpyF10VI	GCNNNNNNNGC	7 cut(s)	343, 374, 478, 504, 525, 625, 797
HpyF3I	CTNAG	2 cut(s)	333, 825
Hsp92I	GRCGYC	1 cut(s)	753
Hsp92II	CATG	3 cut(s)	436, 485, 632
HspAI	GCGC	1 cut(s)	753
KasI	GGCGCC	1 cut(s)	752
Kzo9I	GATC	4 cut(s)	424, 489, 633, 901
LmnI	GCTCC	4 cut(s)	179, 286, 710, 764
Lsp1109I	GCAGC	3 cut(s)	194, 598, 784
LweI	GCATC	4 cut(s)	218, 265, 537, 811
MaeI	CTAG	1 cut(s)	809
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	4 cut(s)	426, 491, 635, 903
MboI	GATC	4 cut(s)	424, 489, 633, 901
MflI	RGATCY	1 cut(s)	633
MluCI	AATT	8 cut(s)	171, 215, 396, 465, 510, 643, 735, 769
Mly113I	GGCGCC	1 cut(s)	753
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	2 cut(s)	677, 692
MnlI	CCTC	7 cut(s)	7, 399, 443, 504, 539, 717, 854
MseI	TTAA	3 cut(s)	90, 468, 913
MslI	CAYNNNNRTG	1 cut(s)	9
MspI	CCGG	1 cut(s)	637
MspR9I	CCNGG	3 cut(s)	413, 638, 708
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	2 cut(s)	413, 708
MwoI	GCNNNNNNNGC	7 cut(s)	343, 374, 478, 504, 525, 625, 797
NarI	GGCGCC	1 cut(s)	753
NciI	CCSGG	1 cut(s)	638
NdeII	GATC	4 cut(s)	424, 489, 633, 901
NlaIII	CATG	3 cut(s)	436, 485, 632
NlaIV	GGNNCC	4 cut(s)	232, 635, 754, 891
NspI	RCATGY	1 cut(s)	485
NspV	TTCGAA	1 cut(s)	884
PagI	TCATGA	1 cut(s)	432
PaqCI	CACCTGC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	663
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	4 cut(s)	184, 280, 613, 799
PleI	GAGTC	1 cut(s)	702
PluTI	GGCGCC	1 cut(s)	756
PpsI	GAGTC	1 cut(s)	702
PpuMI	RGGWCCY	1 cut(s)	889
Psp5II	RGGWCCY	1 cut(s)	889
Psp6I	CCWGG	2 cut(s)	411, 706
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	411, 706
PspN4I	GGNNCC	4 cut(s)	232, 635, 754, 891
PspPI	GGNCC	3 cut(s)	293, 403, 889
PspPPI	RGGWCCY	1 cut(s)	889
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	2 cut(s)	359, 456
RsaNI	GTAC	2 cut(s)	358, 455
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	90, 468, 913
SatI	GCNGC	4 cut(s)	183, 279, 612, 798
Sau3AI	GATC	4 cut(s)	424, 489, 633, 901
Sau96I	GGNCC	3 cut(s)	293, 403, 889
ScaI	AGTACT	1 cut(s)	456
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	3 cut(s)	413, 638, 708
SfaNI	GCATC	4 cut(s)	218, 265, 537, 811
SfcI	CTRYAG	1 cut(s)	612
SfoI	GGCGCC	1 cut(s)	754
SfuI	TTCGAA	1 cut(s)	884
SinI	GGWCC	3 cut(s)	293, 403, 889
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	8 cut(s)	171, 215, 396, 465, 510, 643, 735, 769
SsiI	CCGC	2 cut(s)	248, 278
SspDI	GGCGCC	1 cut(s)	752
SspMI	CTAG	1 cut(s)	809
StyD4I	CCNGG	3 cut(s)	411, 636, 706
StyI	CCWWGG	2 cut(s)	234, 756
TaqI	TCGA	2 cut(s)	255, 884
TasI	AATT	8 cut(s)	171, 215, 396, 465, 510, 643, 735, 769
TatI	WGTACW	2 cut(s)	357, 454
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	90, 468, 913
Tru9I	TTAA	3 cut(s)	90, 468, 913
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	3 cut(s)	182, 611, 797
TspDTI	ATGAA	5 cut(s)	45, 123, 208, 298, 449
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	3 cut(s)	293, 403, 889
XapI	RAATTY	2 cut(s)	215, 735
XceI	RCATGY	1 cut(s)	485
XspI	CTAG	1 cut(s)	809
ZrmI	AGTACT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.