Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

73146537 .. 73147972

Gene Structure 1436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG521800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCACTACTATGAGGATTCTGATTTTGATGAAAGCGAAAACCGAGAACTAATAGGGATTGAAGTTTTGAACAGGAAAAATGTTGCCTTTAATAGAGCTTTGGTTTCTCCAATCTGCTTCAAGATGGGATATTCATTCCAGAGTGCAAGACTTGAAGGCAAGGTGGCACTAATTACTGGAGCAGCAAGTGGCCTAGGAAAGGCAACTGCATCAAAATTCATCAGCAATGGTGCCAAGGTTGTTCTTGCAGATATCGAACACCAGCTTGGGCAAGACGCGGCAAAGGAGCTTGGTCCTAATGCCAGCTTCATTGCCTGTGATGTCACAAAAGAATCCGACATTTCCAATGCTGTGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGTACAGAAATACAGCATCGCTGGACTAACGGGAGGAGTAGCACAGCACACCCATTCTCTGTCATAGGCATTGTCAAGTCTCTGGCTGCAGAGCTATGCCAGCATAGGATCCGGGTCAATTGCATATCCCCATTTGGCATTCCAACCCCAATGGTAATCAAAGAAATGAGTCGGATTTTTCCAGGAGCTGATGTAGAGAGGCTAATCAAAATTTTATATCACTTTGGCGCCTTGGAAGGAGCAAACTGTGAACCCAATGACATTGCCAATGCTGCACTTTATCTAGCTTCAGATGATGCTAAGTATGTTAGTAGGCATAATATGGTTGTAGATGGAGGTTTTACATCTGTAAAGATTTCGAAGGTCCCTGCACCAGATCAGGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

259

Amino Acids

27.99

Weight (kDa)

6.17

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	54 - 118	1.2e-13	short chain dehydrogenase
adh_short_C2	PF13561	60 - 118	2.1e-09	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	144 - 245	1.3e-17	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	230, 617
AccII	CGCG	1 cut(s)	278
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	2 cut(s)	493, 506
AcsI	RAATTY	2 cut(s)	215, 600
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	618
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	62, 70, 121, 155
AjnI	CCWGG	1 cut(s)	571
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	8 cut(s)	98, 265, 289, 306, 381, 484, 578, 677
AluI	AGCT	8 cut(s)	98, 265, 289, 306, 381, 484, 578, 677
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	493, 506
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	182, 476, 662
ApoI	RAATTY	2 cut(s)	215, 600
AspA2I	CCTAGG	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	2 cut(s)	293, 754
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	351
AsuII	TTCGAA	1 cut(s)	749
AvaII	GGWCC	2 cut(s)	293, 754
AvrII	CCTAGG	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	498
BanI	GGYRCC	2 cut(s)	230, 617
BbvI	GCAGC	3 cut(s)	194, 463, 649
BccI	CCATC	3 cut(s)	118, 370, 716
BciT130I	CCWGG	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	194, 674
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	621
BisI	GCNGC	4 cut(s)	183, 279, 477, 663
BlnI	CCTAGG	1 cut(s)	193
BlsI	GCNGC	4 cut(s)	184, 280, 478, 664
Bme1390I	CCNGG	2 cut(s)	503, 573
Bme18I	GGWCC	2 cut(s)	293, 754
BmgT120I	GGNCC	2 cut(s)	293, 754
BmiI	GGNNCC	4 cut(s)	232, 500, 619, 756
BmrFI	CCNGG	2 cut(s)	503, 573
BmsI	GCATC	3 cut(s)	218, 415, 676
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	193, 234, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	3 cut(s)	232, 309, 651
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	193, 234, 621
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	3 cut(s)	232, 309, 651
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	439
BseXI	GCAGC	3 cut(s)	194, 463, 649
BsgI	GTGCAG	2 cut(s)	648, 744
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	2 cut(s)	230, 617
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	1 cut(s)	740
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	740
BsmI	GAATGC	1 cut(s)	528
BsnI	GGCC	1 cut(s)	192
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1407I	TGTACA	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	498, 766
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	4 cut(s)	232, 500, 619, 756
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	2 cut(s)	493, 506
BspT104I	TTCGAA	1 cut(s)	749
BspT107I	GGYRCC	2 cut(s)	230, 617
BsrDI	GCAATG	3 cut(s)	232, 309, 651
BsrGI	TGTACA	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	3 cut(s)	193, 234, 621
BssMI	GATC	2 cut(s)	498, 766
BssNI	GRCGYC	1 cut(s)	618
BssT1I	CCWWGG	3 cut(s)	193, 234, 621
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	638
BstACI	GRCGYC	1 cut(s)	618
BstAUI	TGTACA	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	749
BstC8I	GCNNGC	3 cut(s)	304, 379, 491
BstDEI	CTNAG	2 cut(s)	368, 690
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	2 cut(s)	501, 769
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	2 cut(s)	498, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	378, 490, 662
BstNI	CCWGG	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	501, 571
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	194, 463, 649
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	392
Cac8I	GCNNGC	3 cut(s)	304, 379, 491
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	293, 754
CseI	GACGC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	393
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	368, 690
DinI	GGCGCC	1 cut(s)	619
DpnI	GATC	2 cut(s)	500, 768
DpnII	GATC	2 cut(s)	498, 766
Eco130I	CCWWGG	3 cut(s)	193, 234, 621
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	293, 754
Eco57I	CTGAAG	1 cut(s)	663
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	571
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	3 cut(s)	193, 234, 621
EgeI	GGCGCC	1 cut(s)	619
EheI	GGCGCC	1 cut(s)	619
ErhI	CCWWGG	3 cut(s)	193, 234, 621
FaqI	GGGAC	1 cut(s)	740
Fnu4HI	GCNGC	4 cut(s)	183, 279, 477, 663
Fsp4HI	GCNGC	4 cut(s)	183, 279, 477, 663
FspBI	CTAG	2 cut(s)	194, 674
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	4 cut(s)	183, 279, 477, 663
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	502
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	620
Hin1I	GRCGYC	1 cut(s)	618
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HinfI	GANTC	3 cut(s)	17, 332, 559
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	4 cut(s)	22, 337, 564, 682
Hpy188III	TCNNGA	2 cut(s)	121, 139
Hpy8I	GTNNAC	1 cut(s)	641
HpyAV	CCTTC	3 cut(s)	149, 620, 745
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4V	TGCA	8 cut(s)	4, 146, 209, 248, 479, 513, 665, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	378, 490, 662
HpyF3I	CTNAG	2 cut(s)	368, 690
Hsp92I	GRCGYC	1 cut(s)	618
HspAI	GCGC	1 cut(s)	618
KasI	GGCGCC	1 cut(s)	617
Kzo9I	GATC	2 cut(s)	498, 766
LmnI	GCTCC	4 cut(s)	179, 286, 575, 629
Lsp1109I	GCAGC	3 cut(s)	194, 463, 649
LweI	GCATC	3 cut(s)	218, 415, 676
MaeI	CTAG	2 cut(s)	194, 674
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	500, 768
MboI	GATC	2 cut(s)	498, 766
MfeI	CAATTG	1 cut(s)	508
MflI	RGATCY	1 cut(s)	498
MluCI	AATT	4 cut(s)	171, 215, 508, 600
Mly113I	GGCGCC	1 cut(s)	618
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	3 cut(s)	360, 542, 557
MnlI	CCTC	4 cut(s)	7, 417, 582, 719
MseI	TTAA	2 cut(s)	90, 778
MslI	CAYNNNNRTG	1 cut(s)	9
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	503, 573
MunI	CAATTG	1 cut(s)	508
Mva1269I	GAATGC	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	573
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	378, 490, 662
NarI	GGCGCC	1 cut(s)	618
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	2 cut(s)	498, 766
NlaIV	GGNNCC	4 cut(s)	232, 500, 619, 756
NmuCI	GTSAC	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	749
PctI	GAATGC	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	17, 332
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	184, 280, 478, 664
PleI	GAGTC	1 cut(s)	567
PluTI	GGCGCC	1 cut(s)	621
PpsI	GAGTC	1 cut(s)	567
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspN4I	GGNNCC	4 cut(s)	232, 500, 619, 756
PspPI	GGNCC	2 cut(s)	293, 754
PspPPI	RGGWCCY	1 cut(s)	754
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	498
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	90, 778
SatI	GCNGC	4 cut(s)	183, 279, 477, 663
Sau3AI	GATC	2 cut(s)	498, 766
Sau96I	GGNCC	2 cut(s)	293, 754
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	503, 573
SfaNI	GCATC	3 cut(s)	218, 415, 676
SfcI	CTRYAG	1 cut(s)	477
SfoI	GGCGCC	1 cut(s)	619
SfuI	TTCGAA	1 cut(s)	749
SinI	GGWCC	2 cut(s)	293, 754
SmiMI	CAYNNNNRTG	1 cut(s)	9
Sse9I	AATT	4 cut(s)	171, 215, 508, 600
SsiI	CCGC	1 cut(s)	278
SspDI	GGCGCC	1 cut(s)	617
SspMI	CTAG	2 cut(s)	194, 674
StyD4I	CCNGG	2 cut(s)	501, 571
StyI	CCWWGG	3 cut(s)	193, 234, 621
TaaI	ACNGT	1 cut(s)	638
TaqI	TCGA	2 cut(s)	255, 749
TasI	AATT	4 cut(s)	171, 215, 508, 600
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	17, 332
Tru1I	TTAA	2 cut(s)	90, 778
Tru9I	TTAA	2 cut(s)	90, 778
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	182, 476, 662
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	4 cut(s)	45, 123, 208, 298
VpaK11BI	GGWCC	2 cut(s)	293, 754
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	2 cut(s)	215, 600
XmaJI	CCTAGG	1 cut(s)	193
XspI	CTAG	2 cut(s)	194, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.