Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Reverse (-)

10538600 .. 10539998

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1056500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCTCAGGGTTGCCTTCAGAAAAAATGTCACCATTTCAAGAGCTCCATTGGCTTCTCCGACCTTCAAGATGGGATTTTCATCCCAGCATAGCAGGCTTGAAGGCAAAGTGGCGCTGATTACCGGAGCAGCAAGCGGCATAGGGAAGGCAACCGCGTCAAAGTTCGTCAGCAACGGCGCCAAAGTTGTCATTGCCGATATCCAACAGCAGCTCGGGCAGCTCGCAGCGAAAGAGCTCGGTCCAAACGCGGCATTCATTGCCTGCGATGTCACGAAAGAATCCGACATTTCCAACGCCATTGATTTCACCGTCTCCGAACATAGCCAGCTTGACATTATGTACAGCAATGCCGGGGTGCCCTGCTACACTCCCCCGAGCATCGTGGACCTCGATCTTACAGCATTCGACCGCGTCATGAGCATCAACGTGCGAGGAGTCGTGGCAGGAATCAAGCACGCGTCGCGCGTGATGATCCCGCGCAAAACTGGCTCCATTCTTTGCACAGCCAGCGTGACGGGACTGATGGGAGGACTGGCGCAGCACACATACTCCGTGTCCAAGTCTGCCGTCATTGGCATTGTCAAGTCCGTGGCTGCAGAGCTATGCAAGCATGGAATCCGAGTCAATTGCATATCGCCATTTGCCATTCCAACCCCGTTTGTGATCGAGGAAATGACTCAAATTTTCCCGGGGGTTGATAGACAACGGCTGATAGAACTAACGCACAACGCAGGCGTCTTGGCTGGCGCAAAATGTGAACCCAACGACGTCGCTAACGCTGCACTTTACCTAGCTTCCGACGAGGCTAAATACGTCAGTGGCCATAATTTAGTTGTGGATGGAGGTTTTACATCTTTCAAGATATTGCAATTTCCTGCACCAGATCAGGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

299

Amino Acids

31.5

Weight (kDa)

8.7

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	36 - 223	3.2e-48	short chain dehydrogenase
KR	PF08659	38 - 194	2.5e-09	KR domain
adh_short_C2	PF13561	42 - 284	6.1e-59	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	771
AccB1I	GGYRCC	2 cut(s)	176, 355
AccII	CGCG	7 cut(s)	155, 248, 411, 458, 463, 465, 478
AciI	CCGC	5 cut(s)	135, 153, 248, 409, 476
AclWI	GGATC	1 cut(s)	466
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	681
AcyI	GRCGYC	3 cut(s)	177, 735, 768
AfaI	GTAC	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	4 cut(s)	39, 67, 101, 859
AluBI	AGCT	7 cut(s)	44, 211, 220, 235, 328, 601, 794
AluI	AGCT	7 cut(s)	44, 211, 220, 235, 328, 601, 794
Alw21I	GWGCWC	2 cut(s)	46, 237
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	466
Ama87I	CYCGRG	3 cut(s)	212, 373, 688
AoxI	GGCC	1 cut(s)	820
ApeKI	GCWGC	7 cut(s)	128, 208, 217, 224, 538, 593, 779
ApoI	RAATTY	1 cut(s)	681
AspLEI	GCGC	6 cut(s)	115, 179, 465, 480, 538, 749
AspS9I	GGNCC	2 cut(s)	239, 385
AsuC2I	CCSGG	3 cut(s)	352, 689, 690
AsuHPI	GGTGA	2 cut(s)	22, 298
AvaI	CYCGRG	3 cut(s)	212, 373, 688
AvaII	GGWCC	2 cut(s)	239, 385
BaeGI	GKGCMC	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	822
BanI	GGYRCC	2 cut(s)	176, 355
BanII	GRGCYC	2 cut(s)	46, 237
Bbv12I	GWGCWC	2 cut(s)	46, 237
BbvI	GCAGC	7 cut(s)	140, 220, 229, 236, 550, 580, 766
BccI	CCATC	3 cut(s)	64, 517, 833
BceAI	ACGGC	3 cut(s)	190, 551, 722
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BcnI	CCSGG	3 cut(s)	352, 689, 690
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	2 cut(s)	116, 180
BisI	GCNGC	9 cut(s)	129, 136, 209, 218, 225, 249, 539, 594, 780
BlsI	GCNGC	9 cut(s)	130, 137, 210, 219, 226, 250, 540, 595, 781
Bme1390I	CCNGG	3 cut(s)	352, 689, 690
Bme18I	GGWCC	2 cut(s)	239, 385
BmeT110I	CYCGRG	3 cut(s)	212, 373, 688
BmgT120I	GGNCC	2 cut(s)	239, 385
BmiI	GGNNCC	3 cut(s)	178, 357, 490
BmrFI	CCNGG	3 cut(s)	352, 689, 690
BmsI	GCATC	2 cut(s)	387, 429
Bpu10I	CCTNAGC	1 cut(s)	5
BpuMI	CCSGG	3 cut(s)	352, 689, 690
BsaBI	GATNNNNATC	1 cut(s)	79
BsaHI	GRCGYC	3 cut(s)	177, 735, 768
BsaJI	CCNNGG	4 cut(s)	351, 588, 688, 689
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bse1I	ACTGG	2 cut(s)	490, 537
Bse3DI	GCAATG	3 cut(s)	189, 255, 352
Bse8I	GATNNNNATC	1 cut(s)	79
BseDI	CCNNGG	4 cut(s)	351, 588, 688, 689
BseGI	GGATG	2 cut(s)	80, 844
BseJI	GATNNNNATC	1 cut(s)	79
BseMI	GCAATG	3 cut(s)	189, 255, 352
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	490, 537
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	7 cut(s)	140, 220, 229, 236, 550, 580, 766
BseYI	CCCAGC	1 cut(s)	84
BsgI	GTGCAG	2 cut(s)	765, 861
Bsh1236I	CGCG	7 cut(s)	155, 248, 411, 458, 463, 465, 478
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	1 cut(s)	822
BshNI	GGYRCC	2 cut(s)	176, 355
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	2 cut(s)	46, 237
BsiHKCI	CYCGRG	3 cut(s)	212, 373, 688
BsiSI	CCGG	3 cut(s)	123, 351, 689
BslFI	GGGAC	1 cut(s)	531
BsmAI	GTCTC	1 cut(s)	316
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	2 cut(s)	251, 401
BsnI	GGCC	1 cut(s)	822
BsoBI	CYCGRG	3 cut(s)	212, 373, 688
Bsp1286I	GDGCHC	3 cut(s)	46, 237, 360
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	4 cut(s)	391, 471, 663, 883
BspACI	CCGC	5 cut(s)	135, 153, 248, 409, 476
BspANI	GGCC	1 cut(s)	822
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	7 cut(s)	155, 248, 411, 458, 463, 465, 478
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	178, 357, 490
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	1 cut(s)	466
BspT107I	GGYRCC	2 cut(s)	176, 355
BsrDI	GCAATG	3 cut(s)	189, 255, 352
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	490, 537
BssECI	CCNNGG	4 cut(s)	351, 588, 688, 689
BssMI	GATC	4 cut(s)	391, 471, 663, 883
BssNI	GRCGYC	3 cut(s)	177, 735, 768
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	3 cut(s)	177, 735, 768
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstAUI	TGTACA	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	80, 844
BstFNI	CGCG	7 cut(s)	155, 248, 411, 458, 463, 465, 478
BstH2I	RGCGCY	2 cut(s)	116, 180
BstHHI	GCGC	6 cut(s)	115, 179, 465, 480, 538, 749
BstKTI	GATC	4 cut(s)	394, 474, 666, 886
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	4 cut(s)	391, 471, 663, 883
BstMCI	CGRYCG	1 cut(s)	409
BstSCI	CCNGG	3 cut(s)	350, 687, 688
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	360
BstUI	CGCG	7 cut(s)	155, 248, 411, 458, 463, 465, 478
BstV1I	GCAGC	7 cut(s)	140, 220, 229, 236, 550, 580, 766
BsuRI	GGCC	1 cut(s)	822
BtgI	CCRYGG	1 cut(s)	588
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	80, 844
BtsIMutI	CAGTG	1 cut(s)	823
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	6 cut(s)	115, 179, 465, 480, 538, 749
Cfr13I	GGNCC	2 cut(s)	239, 385
Cfr9I	CCCGGG	1 cut(s)	688
CseI	GACGC	4 cut(s)	144, 400, 447, 724
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	415, 611
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	5
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	4 cut(s)	393, 473, 665, 885
DpnII	GATC	4 cut(s)	391, 471, 663, 883
EaeI	YGGCCR	1 cut(s)	820
Ecl136II	GAGCTC	2 cut(s)	44, 235
Eco24I	GRGCYC	2 cut(s)	46, 237
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	239, 385
Eco53kI	GAGCTC	2 cut(s)	44, 235
Eco88I	CYCGRG	3 cut(s)	212, 373, 688
EcoICRI	GAGCTC	2 cut(s)	44, 235
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	2 cut(s)	46, 237
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	2 cut(s)	418, 614
FaqI	GGGAC	1 cut(s)	531
FatI	CATG	2 cut(s)	414, 610
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	9 cut(s)	129, 136, 209, 218, 225, 249, 539, 594, 780
FokI	GGATG	2 cut(s)	67, 851
FriOI	GRGCYC	2 cut(s)	46, 237
Fsp4HI	GCNGC	9 cut(s)	129, 136, 209, 218, 225, 249, 539, 594, 780
FspBI	CTAG	1 cut(s)	791
GlaI	GCGC	6 cut(s)	114, 178, 464, 479, 537, 748
GluI	GCNGC	9 cut(s)	129, 136, 209, 218, 225, 249, 539, 594, 780
GsaI	CCCAGC	1 cut(s)	88
HaeII	RGCGCY	2 cut(s)	116, 180
HaeIII	GGCC	1 cut(s)	822
HapII	CCGG	3 cut(s)	123, 351, 689
HgaI	GACGC	4 cut(s)	144, 400, 447, 724
HhaI	GCGC	6 cut(s)	115, 179, 465, 480, 538, 749
Hin1I	GRCGYC	3 cut(s)	177, 735, 768
Hin1II	CATG	2 cut(s)	418, 614
Hin6I	GCGC	6 cut(s)	113, 177, 463, 478, 536, 747
HinP1I	GCGC	6 cut(s)	113, 177, 463, 478, 536, 747
HinfI	GANTC	6 cut(s)	278, 435, 447, 615, 621, 676
HpaII	CCGG	3 cut(s)	123, 351, 689
HphI	GGTGA	2 cut(s)	22, 298
Hpy166II	GTNNAC	2 cut(s)	385, 758
Hpy188I	TCNGA	6 cut(s)	20, 60, 283, 316, 620, 799
Hpy188III	TCNNGA	5 cut(s)	39, 67, 271, 415, 859
Hpy8I	GTNNAC	2 cut(s)	385, 758
Hpy99I	CGWCG	4 cut(s)	463, 770, 773, 803
HpyAV	CCTTC	4 cut(s)	25, 73, 95, 139
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	3 cut(s)	426, 768, 813
HpyCH4V	TGCA	8 cut(s)	501, 596, 606, 630, 782, 868, 878, 892
HpyF3I	CTNAG	1 cut(s)	5
HpySE526I	ACGT	3 cut(s)	426, 768, 813
Hsp92I	GRCGYC	3 cut(s)	177, 735, 768
Hsp92II	CATG	2 cut(s)	418, 614
HspAI	GCGC	6 cut(s)	113, 177, 463, 478, 536, 747
KasI	GGCGCC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	391, 471, 663, 883
LmnI	GCTCC	3 cut(s)	49, 125, 494
Lsp1109I	GCAGC	7 cut(s)	140, 220, 229, 236, 550, 580, 766
LweI	GCATC	2 cut(s)	387, 429
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	3 cut(s)	426, 768, 813
MaeIII	GTNAC	3 cut(s)	28, 268, 511
MalI	GATC	4 cut(s)	393, 473, 665, 885
MboI	GATC	4 cut(s)	391, 471, 663, 883
MfeI	CAATTG	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	46, 237, 360
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	4 cut(s)	625, 681, 826, 869
MluI	ACGCGT	1 cut(s)	456
MluNI	TGGCCA	1 cut(s)	822
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	3 cut(s)	444, 630, 670
MmeI	TCCRAC	6 cut(s)	83, 226, 306, 315, 674, 822
MnlI	CCTC	6 cut(s)	398, 425, 521, 661, 796, 836
Mox20I	TGGCCA	1 cut(s)	822
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	1 cut(s)	895
MslI	CAYNNNNRTG	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	822
MspI	CCGG	3 cut(s)	123, 351, 689
MspR9I	CCNGG	3 cut(s)	352, 689, 690
MunI	CAATTG	1 cut(s)	625
Mva1269I	GAATGC	2 cut(s)	251, 401
MvnI	CGCG	7 cut(s)	155, 248, 411, 458, 463, 465, 478
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	3 cut(s)	352, 689, 690
NdeII	GATC	4 cut(s)	391, 471, 663, 883
NlaIII	CATG	2 cut(s)	418, 614
NlaIV	GGNNCC	3 cut(s)	178, 357, 490
NmuCI	GTSAC	3 cut(s)	28, 268, 511
PagI	TCATGA	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 462
PctI	GAATGC	2 cut(s)	251, 401
PfeI	GAWTC	3 cut(s)	278, 447, 615
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	9 cut(s)	130, 137, 210, 219, 226, 250, 540, 595, 781
PleI	GAGTC	3 cut(s)	443, 629, 670
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	3 cut(s)	443, 629, 670
Psp124BI	GAGCTC	2 cut(s)	46, 237
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	3 cut(s)	178, 357, 490
PspPI	GGNCC	2 cut(s)	239, 385
PstI	CTGCAG	1 cut(s)	598
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	2 cut(s)	46, 237
SaqAI	TTAA	1 cut(s)	895
SatI	GCNGC	9 cut(s)	129, 136, 209, 218, 225, 249, 539, 594, 780
Sau3AI	GATC	4 cut(s)	391, 471, 663, 883
Sau96I	GGNCC	2 cut(s)	239, 385
SchI	GAGTC	3 cut(s)	444, 630, 670
ScrFI	CCNGG	3 cut(s)	352, 689, 690
SduI	GDGCHC	3 cut(s)	46, 237, 360
SfaNI	GCATC	2 cut(s)	387, 429
SfcI	CTRYAG	1 cut(s)	594
SfoI	GGCGCC	1 cut(s)	178
SinI	GGWCC	2 cut(s)	239, 385
SmaI	CCCGGG	1 cut(s)	690
SmiMI	CAYNNNNRTG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	625, 681, 826, 869
SsiI	CCGC	5 cut(s)	135, 153, 248, 409, 476
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	791
SstI	GAGCTC	2 cut(s)	46, 237
StyD4I	CCNGG	3 cut(s)	350, 687, 688
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	3 cut(s)	429, 771, 816
TaqI	TCGA	3 cut(s)	390, 405, 666
TaqII	GACCGA	1 cut(s)	227
TasI	AATT	4 cut(s)	625, 681, 826, 869
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	138, 251
TfiI	GAWTC	3 cut(s)	278, 447, 615
Tru1I	TTAA	1 cut(s)	895
Tru9I	TTAA	1 cut(s)	895
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	3 cut(s)	28, 268, 511
TseI	GCWGC	7 cut(s)	128, 208, 217, 224, 538, 593, 779
Tsp45I	GTSAC	3 cut(s)	28, 268, 511
TspDTI	ATGAA	2 cut(s)	69, 244
TspGWI	ACGGA	2 cut(s)	541, 577
TspMI	CCCGGG	1 cut(s)	688
TspRI	CASTG	1 cut(s)	823
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	239, 385
XapI	RAATTY	1 cut(s)	681
XmaI	CCCGGG	1 cut(s)	688
XspI	CTAG	1 cut(s)	791
ZraI	GACGTC	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.