Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Forward (+)

20078626 .. 20080906

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24720.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGGTATTCATCACAGAGTGGAAGACTTGAAGGCAAGGTGGCACTGATTACTGGAGCAGCAAGTGGCATAGGAAAGGCAACCGCATCAAAATTTATCAGCAATGGCGCCAAGGTTGTTCTTGCAGATATACAACAGCAGCTTGGCCAAGAAGTAGCAAAGGAGCTTGGTCCTAATGCCAGCTTCATTGCCTGTGATGTCACGAAAGAATCTGACATTTCCAGTGCTGTAGATTTCACCATCTCTAAGCACAGCCAGCTTGATATTATGTACAGCAATGCAGGTGTAGCTTGTATGACTCCCCCAAGTATTGTGGACCTTGACCTGGCAGTGTTTGATTGTGTCATGAACATCAACGTGCGAGGAGTCCTGGCAGGAATTAAGCACGCTTCACGTGTGATGATCCCACGCAAAACTGGCTCAATTCTCTGCACAGCCAGCATCACAGGACTAATGGGAGGACTCGCACAACACACCTATTCTCTGTCCAAGTTTGCTGTCATAGGCATTGTCAAGTCTCTGGCTGCGGAACTATGCCAGCATGGTATCCGGATCAATTGCATATCCCCATTCGCCATTCCAACCCCATTTGTAATCGAAGAAATGAGTAAGATTTATCAAGGAGCTGATGTAGAAAAGCTAATTGAAATCATACATCGCTCTGGCGCCTTAGAAGGAGCAAACTGTGAACCCATTGACATTGCCAATGCTGCACTTTACCTAGCTTCAGATGATGCTAAATATGTTAGTGGCCATAATTTGGTTGTAGATGGAGGTTTTACATCTTTCAAGACTTTGAATTTCCCTGCACCACATCAGGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

276

Amino Acids

28.94

Weight (kDa)

6.23

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	36 - 223	2.4e-48	short chain dehydrogenase
KR	PF08659	38 - 186	1.9e-08	KR domain
adh_short_C2	PF13561	42 - 284	1.1e-58	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	107, 665
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccIII	TCCGGA	1 cut(s)	549
AciI	CCGC	2 cut(s)	84, 527
AclWI	GGATC	2 cut(s)	397, 560
AcoI	YGGCCR	2 cut(s)	145, 751
AcsI	RAATTY	2 cut(s)	92, 799
AcuI	CTGAAG	1 cut(s)	711
AcvI	CACGTG	1 cut(s)	395
AcyI	GRCGYC	2 cut(s)	108, 666
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	325, 760
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	32, 647, 790, 799
AjnI	CCWGG	2 cut(s)	324, 369
AluBI	AGCT	8 cut(s)	142, 166, 183, 259, 290, 626, 640, 725
AluI	AGCT	8 cut(s)	142, 166, 183, 259, 290, 626, 640, 725
Alw26I	GTCTC	1 cut(s)	522
AlwI	GGATC	2 cut(s)	397, 560
Aor13HI	TCCGGA	1 cut(s)	549
AoxI	GGCC	2 cut(s)	145, 751
ApeKI	GCWGC	4 cut(s)	59, 139, 524, 710
ApoI	RAATTY	2 cut(s)	92, 799
AspLEI	GCGC	2 cut(s)	110, 668
AspS9I	GGNCC	2 cut(s)	170, 316
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	170, 316
BalI	TGGCCA	2 cut(s)	147, 753
BanI	GGYRCC	2 cut(s)	107, 665
BbrPI	CACGTG	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	71, 151, 511, 697
BccI	CCATC	2 cut(s)	248, 764
BciT130I	CCWGG	2 cut(s)	326, 371
BciVI	GTATCC	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	522
BfaI	CTAG	1 cut(s)	722
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	2 cut(s)	111, 669
BfuAI	ACCTGC	1 cut(s)	272
BfuI	GTATCC	1 cut(s)	557
BisI	GCNGC	4 cut(s)	60, 140, 525, 711
BlsI	GCNGC	4 cut(s)	61, 141, 526, 712
Bme1390I	CCNGG	2 cut(s)	326, 371
Bme18I	GGWCC	2 cut(s)	170, 316
BmgT120I	GGNCC	2 cut(s)	170, 316
BmiI	GGNNCC	2 cut(s)	109, 667
BmrFI	CCNGG	2 cut(s)	326, 371
BmsI	GCATC	3 cut(s)	95, 450, 724
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	395
BsaHI	GRCGYC	2 cut(s)	108, 666
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 760
Bse1I	ACTGG	3 cut(s)	58, 222, 421
Bse3DI	GCAATG	4 cut(s)	109, 186, 283, 699
BseAI	TCCGGA	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	326, 371
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	325, 760
BseMI	GCAATG	4 cut(s)	109, 186, 283, 699
BseNI	ACTGG	3 cut(s)	58, 222, 421
BseRI	GAGGAG	1 cut(s)	378
BseXI	GCAGC	4 cut(s)	71, 151, 511, 697
BsgI	GTGCAG	3 cut(s)	415, 696, 792
BshFI	GGCC	2 cut(s)	147, 753
BshNI	GGYRCC	2 cut(s)	107, 665
BsiSI	CCGG	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	325, 760
BsmAI	GTCTC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	147, 753
Bsp13I	TCCGGA	1 cut(s)	549
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	402, 552
BspACI	CCGC	2 cut(s)	84, 527
BspANI	GGCC	2 cut(s)	147, 753
BspEI	TCCGGA	1 cut(s)	549
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	109, 667
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	2 cut(s)	397, 560
BspT107I	GGYRCC	2 cut(s)	107, 665
BsrDI	GCAATG	4 cut(s)	109, 186, 283, 699
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	58, 222, 421
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	402, 552
BssNI	GRCGYC	2 cut(s)	108, 666
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	326, 371
Bst4CI	ACNGT	1 cut(s)	686
BstACI	GRCGYC	2 cut(s)	108, 666
BstAUI	TGTACA	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	5 cut(s)	181, 257, 387, 439, 539
BstDEI	CTNAG	2 cut(s)	246, 670
BstH2I	RGCGCY	2 cut(s)	111, 669
BstHHI	GCGC	2 cut(s)	110, 668
BstKTI	GATC	2 cut(s)	405, 555
BstMAI	GTCTC	1 cut(s)	522
BstMBI	GATC	2 cut(s)	402, 552
BstMWI	GCNNNNNNNGC	5 cut(s)	256, 287, 417, 438, 710
BstNI	CCWGG	2 cut(s)	326, 371
BstSCI	CCNGG	2 cut(s)	324, 369
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	4 cut(s)	71, 151, 511, 697
BstV2I	GAAGAC	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	147, 753
BtgZI	GCGATG	1 cut(s)	641
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	44, 229, 336
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	5 cut(s)	181, 257, 387, 439, 539
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	2 cut(s)	110, 668
Cfr13I	GGNCC	2 cut(s)	170, 316
Csp6I	GTAC	1 cut(s)	271
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	2 cut(s)	346, 542
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	246, 670
DinI	GGCGCC	2 cut(s)	109, 667
DpnI	GATC	2 cut(s)	404, 554
DpnII	GATC	2 cut(s)	402, 552
DraIII	CACNNNGTG	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	145, 751
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	170, 316
Eco57I	CTGAAG	1 cut(s)	711
Eco72I	CACGTG	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	324, 369
EcoT14I	CCWWGG	1 cut(s)	111
EgeI	GGCGCC	2 cut(s)	109, 667
EheI	GGCGCC	2 cut(s)	109, 667
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	349, 545
FatI	CATG	2 cut(s)	345, 541
Fnu4HI	GCNGC	4 cut(s)	60, 140, 525, 711
Fsp4HI	GCNGC	4 cut(s)	60, 140, 525, 711
FspBI	CTAG	1 cut(s)	722
GlaI	GCGC	2 cut(s)	109, 667
GluI	GCNGC	4 cut(s)	60, 140, 525, 711
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	2 cut(s)	111, 669
HaeIII	GGCC	2 cut(s)	147, 753
HapII	CCGG	1 cut(s)	550
HhaI	GCGC	2 cut(s)	110, 668
Hin1I	GRCGYC	2 cut(s)	108, 666
Hin1II	CATG	2 cut(s)	349, 545
Hin6I	GCGC	2 cut(s)	108, 666
HinP1I	GCGC	2 cut(s)	108, 666
HinfI	GANTC	4 cut(s)	209, 298, 366, 462
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	316, 689
Hpy188I	TCNGA	2 cut(s)	214, 730
Hpy188III	TCNNGA	4 cut(s)	202, 346, 550, 790
Hpy8I	GTNNAC	2 cut(s)	316, 689
HpyAV	CCTTC	2 cut(s)	26, 668
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	2 cut(s)	357, 394
HpyCH4V	TGCA	7 cut(s)	125, 281, 432, 561, 713, 809, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	256, 287, 417, 438, 710
HpyF3I	CTNAG	2 cut(s)	246, 670
HpySE526I	ACGT	2 cut(s)	357, 394
Hsp92I	GRCGYC	2 cut(s)	108, 666
Hsp92II	CATG	2 cut(s)	349, 545
HspAI	GCGC	2 cut(s)	108, 666
KasI	GGCGCC	2 cut(s)	107, 665
Kpn2I	TCCGGA	1 cut(s)	549
Kzo9I	GATC	2 cut(s)	402, 552
LmnI	GCTCC	4 cut(s)	56, 163, 623, 677
Lsp1109I	GCAGC	4 cut(s)	71, 151, 511, 697
LweI	GCATC	3 cut(s)	95, 450, 724
MaeI	CTAG	1 cut(s)	722
MaeII	ACGT	2 cut(s)	357, 394
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	404, 554
MboI	GATC	2 cut(s)	402, 552
MboII	GAAGA	2 cut(s)	36, 611
MfeI	CAATTG	1 cut(s)	556
MlsI	TGGCCA	2 cut(s)	147, 753
MluCI	AATT	7 cut(s)	92, 378, 423, 556, 642, 757, 799
MluNI	TGGCCA	2 cut(s)	147, 753
Mly113I	GGCGCC	2 cut(s)	108, 666
MlyI	GAGTC	3 cut(s)	292, 375, 456
MmeI	TCCRAC	1 cut(s)	605
MnlI	CCTC	3 cut(s)	356, 452, 767
Mox20I	TGGCCA	2 cut(s)	147, 753
MroI	TCCGGA	1 cut(s)	549
MscI	TGGCCA	2 cut(s)	147, 753
MseI	TTAA	2 cut(s)	381, 826
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	2 cut(s)	147, 753
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	326, 371
MunI	CAATTG	1 cut(s)	556
MvaI	CCWGG	2 cut(s)	326, 371
MwoI	GCNNNNNNNGC	5 cut(s)	256, 287, 417, 438, 710
NarI	GGCGCC	2 cut(s)	108, 666
NdeII	GATC	2 cut(s)	402, 552
NlaIII	CATG	2 cut(s)	349, 545
NlaIV	GGNNCC	2 cut(s)	109, 667
NmuCI	GTSAC	1 cut(s)	199
PagI	TCATGA	1 cut(s)	345
PaqCI	CACCTGC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	4 cut(s)	61, 141, 526, 712
PleI	GAGTC	3 cut(s)	292, 374, 456
PluTI	GGCGCC	2 cut(s)	111, 669
PmaCI	CACGTG	1 cut(s)	395
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	3 cut(s)	292, 374, 456
Ppu21I	YACGTR	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	324, 369
PspCI	CACGTG	1 cut(s)	395
PspGI	CCWGG	2 cut(s)	324, 369
PspN4I	GGNNCC	2 cut(s)	109, 667
PspPI	GGNCC	2 cut(s)	170, 316
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	381, 826
SatI	GCNGC	4 cut(s)	60, 140, 525, 711
Sau3AI	GATC	2 cut(s)	402, 552
Sau96I	GGNCC	2 cut(s)	170, 316
SchI	GAGTC	3 cut(s)	292, 375, 456
ScrFI	CCNGG	2 cut(s)	326, 371
SfaNI	GCATC	3 cut(s)	95, 450, 724
SfcI	CTRYAG	1 cut(s)	228
SfoI	GGCGCC	2 cut(s)	109, 667
SinI	GGWCC	2 cut(s)	170, 316
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	7 cut(s)	92, 378, 423, 556, 642, 757, 799
SsiI	CCGC	2 cut(s)	84, 527
SspDI	GGCGCC	2 cut(s)	107, 665
SspMI	CTAG	1 cut(s)	722
StyD4I	CCNGG	2 cut(s)	324, 369
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	2 cut(s)	360, 397
TaqI	TCGA	1 cut(s)	597
TasI	AATT	7 cut(s)	92, 378, 423, 556, 642, 757, 799
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	381, 826
Tru9I	TTAA	2 cut(s)	381, 826
TscAI	CASTG	3 cut(s)	51, 229, 336
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	4 cut(s)	59, 139, 524, 710
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	175, 362
TspRI	CASTG	3 cut(s)	51, 229, 336
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	2 cut(s)	170, 316
XapI	RAATTY	2 cut(s)	92, 799
XspI	CTAG	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.