Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004022

Physical Location & Seq

Genomic Coordinates Reverse (-)

10315238 .. 10316065

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATCCCTCGCAAAACTGGCTCAATTCTCTGCACACCCAGCATCGCAGGACTAACGGGAGGAGTAGCACAGCACACCTATTCTCTGTCCAAGTCTGCTGTCATAGGCATTGTCAAGTCTCTGGCTGCAAAGCTATGCCAGCATGGGATCCGGGTCAATTGCATATCCCCATTCGGCATTCCAACCCCAATGATAATCAACGAAATGAGTCGGATTTATCCAGGAGCTGATGTAGAGAGGCTAATCAAAATTTTATATCACTTTGGCGCCTTGGAAGGAGCAAATTGTGAACCCAATGACATTGCCAATGCTGCACTTTATCTAGCTTCAGATGATGCTAAGTATGTTAGTAGGCATAATATGGTTGTAGATGGAGGTTTTACATCTGTCAAGATTTCGAAGGTCCCTGCACCAGATCAGGAAAAGCGAAAACCTTCAATGGGTTTGACAACTAGGCCTGCTTTATCCTTTCAGCAATCAAATTCACAGCTGCATTGGCTGATGAGAATGCACCATGAAAACTTTCCTGATAAGAAATGGAAAGAACAGTCTGTGAGAATTGGCTGCGATGAAACCAAGAAATTGAGTGCAGGCACAGCAACATTGATTTTAGCTGTAAGTTCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

209

Amino Acids

22.71

Weight (kDa)

9.34

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	1 - 66	6e-13	short chain dehydrogenase
adh_short_C2	PF13561	4 - 128	1.3e-24	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26760 AT4G03140
fragaria_vesca	FvH4_2g24720 FvH4_2g24720 FvH4_2g24720 FvH4_2g24720
malus_domestica	MD00G1056500.v1.1 MD11G1297800.v1.1
prunus_persica	Prupe.8G252100_v2.0.a1 Prupe.8G252100_v2.0.a1
pyrus_communis	pycom11g26150
rosa_chinensis	RchiOBHm_Chr5g0073011 RchiOBHm_Chr5g0073031
rosa_laevigata	RLG00000012012 RLG00000036354
rosa_multiflora	Rmu_sc0008926.1_g000002 Rmu_sc0010900.1_g000001 Rmu_ssc0000060.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008180 Rroxscaffold_1G00008190 Rroxscaffold_1G00008260 Rroxscaffold_7G00174960
rosa_rugosa	Rorug05G0420600 Rorug06G0227600 Rorug06G0227700
rosa_samantha	Rh5BG498000 Rh5CG521800 Rh6AG340800 Rh6BG348400 Rh6CG355100 Rh6DG340900
rosa_wichuraiana	Rw5G044350 Rw6G029690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AclWI	GGATC	2 cut(s)	142, 155
AcsI	RAATTY	2 cut(s)	249, 481
AcuI	CTGAAG	1 cut(s)	312
AcyI	GRCGYC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	438
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	133, 227, 326, 490, 614
AluI	AGCT	5 cut(s)	133, 227, 326, 490, 614
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	2 cut(s)	142, 155
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	4 cut(s)	125, 311, 490, 564
ApoI	RAATTY	2 cut(s)	249, 481
Asp700I	GAANNNNTTC	2 cut(s)	433, 522
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	1 cut(s)	152
AsuII	TTCGAA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	403
BamHI	GGATCC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	112, 298, 477, 551
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	222
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	123
BfaI	CTAG	2 cut(s)	323, 453
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	4 cut(s)	126, 312, 491, 565
BlsI	GCNGC	4 cut(s)	127, 313, 492, 566
Bme1390I	CCNGG	2 cut(s)	152, 222
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	3 cut(s)	149, 268, 405
BmrFI	CCNGG	2 cut(s)	152, 222
BmsI	GCATC	2 cut(s)	51, 325
Bpu14I	TTCGAA	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMI	GCAATG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	75
BseXI	GCAGC	4 cut(s)	112, 298, 477, 551
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	4 cut(s)	16, 297, 393, 609
BshFI	GGCC	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	389
BsmI	GAATGC	2 cut(s)	177, 513
BsnI	GGCC	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	3, 147, 415
BspANI	GGCC	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	149, 268, 405
BspPI	GGATC	2 cut(s)	142, 155
BspT104I	TTCGAA	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	3 cut(s)	3, 147, 415
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	3 cut(s)	140, 459, 592
BstDEI	CTNAG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	6, 150, 418
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	3 cut(s)	3, 147, 415
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 39, 139, 311, 496, 596
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	150, 220
BstV1I	GCAGC	4 cut(s)	112, 298, 477, 551
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	457
BtgZI	GCGATG	2 cut(s)	28, 582
Cac8I	GCNNGC	3 cut(s)	140, 459, 592
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	403
CviAII	CATG	2 cut(s)	143, 515
DdeI	CTNAG	1 cut(s)	339
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	3 cut(s)	5, 149, 417
DpnII	GATC	3 cut(s)	3, 147, 415
Eco130I	CCWWGG	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	270
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	146, 518
FaiI	YATR	9 cut(s)	104, 136, 144, 164, 256, 345, 357, 362, 516
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	2 cut(s)	142, 514
Fnu4HI	GCNGC	4 cut(s)	126, 312, 491, 565
Fsp4HI	GCNGC	4 cut(s)	126, 312, 491, 565
FspBI	CTAG	2 cut(s)	323, 453
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	4 cut(s)	126, 312, 491, 565
GsaI	CCCAGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	146, 518
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	213, 331
Hpy188III	TCNNGA	3 cut(s)	391, 419, 527
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	269, 394, 444
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4V	TGCA	8 cut(s)	33, 128, 162, 314, 410, 493, 511, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 39, 139, 311, 496, 596
HpyF3I	CTNAG	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	146, 518
HspAI	GCGC	1 cut(s)	267
KasI	GGCGCC	1 cut(s)	266
Kzo9I	GATC	3 cut(s)	3, 147, 415
LmnI	GCTCC	2 cut(s)	224, 278
Lsp1109I	GCAGC	4 cut(s)	112, 298, 477, 551
LweI	GCATC	2 cut(s)	51, 325
MaeI	CTAG	2 cut(s)	323, 453
MalI	GATC	3 cut(s)	5, 149, 417
MboI	GATC	3 cut(s)	3, 147, 415
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	7 cut(s)	24, 157, 249, 283, 481, 558, 581
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	191, 206
MnlI	CCTC	4 cut(s)	18, 53, 231, 368
MroXI	GAANNNNTTC	2 cut(s)	433, 522
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	152, 222
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	2 cut(s)	177, 513
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	6 cut(s)	18, 39, 139, 311, 496, 596
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	3 cut(s)	3, 147, 415
NlaIII	CATG	2 cut(s)	146, 518
NlaIV	GGNNCC	3 cut(s)	149, 268, 405
NspV	TTCGAA	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	457
PctI	GAATGC	2 cut(s)	177, 513
PdmI	GAANNNNTTC	2 cut(s)	433, 522
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	127, 313, 492, 566
PleI	GAGTC	1 cut(s)	216
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	3 cut(s)	149, 268, 405
PspPI	GGNCC	1 cut(s)	403
PspPPI	RGGWCCY	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	490
SatI	GCNGC	4 cut(s)	126, 312, 491, 565
Sau3AI	GATC	3 cut(s)	3, 147, 415
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	152, 222
SetI	ASST	9 cut(s)	80, 135, 229, 328, 379, 405, 436, 492, 616
SfaNI	GCATC	2 cut(s)	51, 325
SfoI	GGCGCC	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	7 cut(s)	24, 157, 249, 283, 481, 558, 581
SseBI	AGGCCT	1 cut(s)	457
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	2 cut(s)	323, 453
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	150, 220
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	549
TaqI	TCGA	1 cut(s)	398
TasI	AATT	7 cut(s)	24, 157, 249, 283, 481, 558, 581
TseI	GCWGC	4 cut(s)	125, 311, 490, 564
TspDTI	ATGAA	3 cut(s)	531, 585, 612
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	2 cut(s)	249, 481
XmnI	GAANNNNTTC	2 cut(s)	433, 522
XspI	CTAG	2 cut(s)	323, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.