Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

10284808 .. 10285874

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGCTTTCTCTCAGCCAGACTCGACCACCAAGCCTTAGCCATAGCCATACCCTTAGCGTCATCGTTCCTAAGAGAACGTTCGTTTCGATCCGATGCGGTCCACGAGACAACCGCGGACCACTTCTCAAAGGCCGAATCCTAAGCACCGAAGCAATCCAATCAATCCAATCTCTCAAACGAGCTCATCGAACCGGTGTCTCCCTCTCCCTTACCCTCCGTCCTCTCCGCCGTCTCATAAAATCCGATCTCATCTCCGTCCTCCGTGAGCTTCTCCGTCAAGACTATTGCACACTCGCTGTCCATGTACTCTCCACTCTCCGTACAGAGTATCCTCCTCTTGACCTTGTTCTATACGCAGACATTGTTAATGCTCTTACGAGGAATAAAGAGTTCGATGAGATAGATCGTCTTATTGGTGAAATTGATGGAATTGATCAAAGAAGTGATGATAAGGCTTTAGCTAAGTTGATTAGGGCTGTGGTTGGAGCTGAGAGGAGAGAGTCGGTGGTTAGGGTTTATACCTTGATGAGGGAAAGTGGTTGGGGGTCTGAGTCATGGGAGGCTGATGAGTATGTCGCTGAGGTTTTGAGTAAGGGTCTCTTGAGACTAGGAGAGCCAGACTTGGCTTCTCAAGTCTCACTCAAATCTTCAATTCTAAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

9.47

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	117
AciI	CCGC	4 cut(s)	99, 115, 117, 229
AclI	AACGTT	1 cut(s)	80
AclWI	GGATC	1 cut(s)	85
AfaI	GTAC	2 cut(s)	309, 325
AfiI	CCNNNNNNNGG	1 cut(s)	531
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	654
AluBI	AGCT	4 cut(s)	185, 271, 464, 491
AluI	AGCT	4 cut(s)	185, 271, 464, 491
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	6 cut(s)	102, 205, 239, 601, 605, 643
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	133
AsiGI	ACCGGT	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	101, 119
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	101, 119
BanII	GRGCYC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	582
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	1 cut(s)	216
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	6 cut(s)	102, 205, 239, 601, 605, 643
BfaI	CTAG	1 cut(s)	611
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	101, 119
BmgT120I	GGNCC	2 cut(s)	101, 119
BmsI	GCATC	1 cut(s)	86
Bpu10I	CCTNAGC	4 cut(s)	38, 56, 143, 582
BpuEI	CTTGAG	2 cut(s)	618, 625
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse118I	RCCGGY	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMII	CTCAG	4 cut(s)	28, 483, 543, 573
BseRI	GAGGAG	2 cut(s)	327, 511
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	135
BshTI	ACCGGT	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	6 cut(s)	102, 205, 239, 601, 605, 643
BsmBI	CGTCTC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	90, 247, 406, 436
BspACI	CCGC	4 cut(s)	99, 115, 117, 229
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	4 cut(s)	27, 484, 544, 574
BspFNI	CGCG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	85
BspTNI	GGTCTC	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	4 cut(s)	90, 247, 406, 436
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
BstDEI	CTNAG	9 cut(s)	14, 38, 56, 72, 143, 465, 492, 552, 582
BstDSI	CCRYGG	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	93, 250, 409, 439
BstMAI	GTCTC	6 cut(s)	102, 205, 239, 601, 605, 643
BstMBI	GATC	4 cut(s)	90, 247, 406, 436
BstUI	CGCG	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	101, 119
Cfr42I	CCGCGG	1 cut(s)	118
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	308, 324
CspAI	ACCGGT	1 cut(s)	194
CviAII	CATG	2 cut(s)	305, 558
CviQI	GTAC	2 cut(s)	308, 324
DdeI	CTNAG	9 cut(s)	14, 38, 56, 72, 143, 465, 492, 552, 582
DpnI	GATC	4 cut(s)	92, 249, 408, 438
DpnII	GATC	4 cut(s)	90, 247, 406, 436
EciI	GGCGGA	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	101, 119
Eco53kI	GAGCTC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	187
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	2 cut(s)	308, 561
FaiI	YATR	8 cut(s)	45, 51, 239, 306, 355, 522, 559, 576
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FatI	CATG	2 cut(s)	304, 557
FbaI	TGATCA	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	308, 561
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	22, 138, 503, 554
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	95, 247, 553
Hpy188III	TCNNGA	3 cut(s)	281, 341, 604
Hpy8I	GTNNAC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	291
HpyF3I	CTNAG	9 cut(s)	14, 38, 56, 72, 143, 465, 492, 552, 582
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	308, 561
HspAI	GCGC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	436
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	90, 247, 406, 436
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	3 cut(s)	32, 208, 633
LweI	GCATC	1 cut(s)	86
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	1 cut(s)	80
MalI	GATC	4 cut(s)	92, 249, 408, 438
MboI	GATC	4 cut(s)	90, 247, 406, 436
MboII	GAAGA	1 cut(s)	642
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	3 cut(s)	423, 432, 654
MlyI	GAGTC	3 cut(s)	16, 512, 563
MmeI	TCCRAC	1 cut(s)	466
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	117
NdeII	GATC	4 cut(s)	90, 247, 406, 436
NlaIII	CATG	2 cut(s)	308, 561
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 187
PfeI	GAWTC	1 cut(s)	138
PinAI	ACCGGT	1 cut(s)	194
PleI	GAGTC	3 cut(s)	16, 511, 562
PpsI	GAGTC	3 cut(s)	16, 511, 562
Psp124BI	GAGCTC	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	80
PspPI	GGNCC	2 cut(s)	101, 119
RsaI	GTAC	2 cut(s)	309, 325
RsaNI	GTAC	2 cut(s)	308, 324
SacI	GAGCTC	1 cut(s)	187
SacII	CCGCGG	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	90, 247, 406, 436
Sau96I	GGNCC	2 cut(s)	101, 119
SchI	GAGTC	3 cut(s)	16, 512, 563
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	9 cut(s)	83, 187, 273, 348, 466, 493, 527, 588, 667
SfaNI	GCATC	1 cut(s)	86
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
SinI	GGWCC	2 cut(s)	101, 119
SmlI	CTYRAG	2 cut(s)	604, 633
SmoI	CTYRAG	2 cut(s)	604, 633
Sse9I	AATT	3 cut(s)	423, 432, 654
SsiI	CCGC	4 cut(s)	99, 115, 117, 229
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	1 cut(s)	187
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	4 cut(s)	25, 89, 190, 396
TasI	AATT	3 cut(s)	423, 432, 654
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TspGWI	ACGGA	5 cut(s)	209, 247, 254, 266, 311
VpaK11BI	GGWCC	2 cut(s)	101, 119
XagI	CCTNNNNNAGG	1 cut(s)	529
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.