Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000315.1

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

127000 .. 127750

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000315.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggggagtaaaagcaagagggagaagcatttgccggaaacgagcgacgatgattcactgtcgtcctctccttcaagctccgacgtatccgaccggtcctcgaaaaggtgtcgtcgccaccgtcacagaatcgacgacggctccagaagagaaagagaaaggagaagggagaggagagagaaatggcaaagggcgcacgagctccaacacggcggctttgagctcaacccacccttgcttttagttcttcggtttcacctacctcatccatggcgtcctctcttcacccaaacccgaccaccttcctcaaacccgtacccagaccattcacaaccacacccacccccaccgcagtccgcgttcccacatggtgccttggtcaaagaccgggtcctcagcatcgaggccatccaagccgtccaagccctcaaacgggcccaaagatccgacccgaacccatccctggtctccaaaaccctctcccgcctaatcaagtcagaccttgacgccgtcctcaaagagcttctacggcaggatcagtggcacctggctctccaggccttctccgccttccgatccgaataccaacccgacctgtcagtctacgccgaggtggctttggctctcgccagaaatgggatggtggaggagatagacactggtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.46

Weight (kDa)

9.79

Isoelectric Point (pI)

70.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	599
AccB1I	GGYRCC	2 cut(s)	371, 543
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	1 cut(s)	359
AciI	CCGC	5 cut(s)	213, 350, 357, 484, 567
AclWI	GGATC	3 cut(s)	438, 543, 570
AcyI	GRCGYC	2 cut(s)	274, 507
AdeI	CACNNNGTG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	5 cut(s)	105, 432, 433, 463, 636
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	3 cut(s)	462, 546, 555
AluBI	AGCT	4 cut(s)	78, 202, 223, 523
AluI	AGCT	4 cut(s)	78, 202, 223, 523
Alw21I	GWGCWC	2 cut(s)	204, 225
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	3 cut(s)	438, 543, 570
AoxI	GGCC	3 cut(s)	405, 435, 558
ApaI	GGGCCC	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	375, 407
AsiGI	ACCGGT	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	4 cut(s)	96, 391, 435, 436
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	2 cut(s)	248, 277
AvaII	GGWCC	2 cut(s)	96, 391
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	2 cut(s)	371, 543
BanII	GRGCYC	3 cut(s)	204, 225, 439
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	204, 225
BbvCI	CCTCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	416, 466, 634
BceAI	ACGGC	5 cut(s)	154, 226, 401, 494, 545
BciT130I	CCWGG	3 cut(s)	464, 548, 557
BciVI	GTATCC	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	97
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
Bme1390I	CCNGG	4 cut(s)	389, 464, 548, 557
Bme18I	GGWCC	2 cut(s)	96, 391
BmgT120I	GGNCC	4 cut(s)	96, 391, 435, 436
BmiI	GGNNCC	5 cut(s)	142, 373, 392, 437, 545
BmrFI	CCNGG	4 cut(s)	389, 464, 548, 557
BmsI	GCATC	1 cut(s)	408
BpmI	CTGGAG	2 cut(s)	127, 539
Bpu10I	CCTNAGC	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	2 cut(s)	274, 507
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	4 cut(s)	269, 375, 462, 609
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 432, 433, 463, 636
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	664
BseBI	CCWGG	3 cut(s)	464, 548, 557
BseDI	CCNNGG	4 cut(s)	269, 375, 462, 609
BseGI	GGATG	4 cut(s)	265, 408, 458, 645
BseLI	CCNNNNNNNGG	5 cut(s)	105, 432, 433, 463, 636
BseMII	CTCAG	1 cut(s)	409
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	2 cut(s)	187, 662
BseSI	GKGCMC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	407, 437, 560
BshNI	GGYRCC	2 cut(s)	371, 543
BshTI	ACCGGT	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	204, 225
BsiSI	CCGG	3 cut(s)	35, 94, 388
BslI	CCNNNNNNNGG	5 cut(s)	105, 432, 433, 463, 636
BsmAI	GTCTC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	407, 437, 560
Bso31I	GGTCTC	1 cut(s)	472
Bsp120I	GGGCCC	1 cut(s)	435
Bsp1286I	GDGCHC	3 cut(s)	204, 225, 439
Bsp143I	GATC	3 cut(s)	443, 535, 575
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	5 cut(s)	213, 350, 357, 484, 567
BspANI	GGCC	3 cut(s)	407, 437, 560
BspCNI	CTCAG	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	5 cut(s)	142, 373, 392, 437, 545
BspPI	GGATC	3 cut(s)	438, 543, 570
BspT107I	GGYRCC	2 cut(s)	371, 543
BspTNI	GGTCTC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	664
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	269, 375, 462, 609
BssMI	GATC	3 cut(s)	443, 535, 575
BssNI	GRCGYC	2 cut(s)	274, 507
BssSI	CACGAG	1 cut(s)	197
BssT1I	CCWWGG	2 cut(s)	269, 375
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	3 cut(s)	464, 548, 557
Bst4CI	ACNGT	2 cut(s)	60, 122
Bst6I	CTCTTC	2 cut(s)	142, 287
BstACI	GRCGYC	2 cut(s)	274, 507
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	103
BstF5I	GGATG	4 cut(s)	265, 408, 458, 645
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	446, 538, 578
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	3 cut(s)	443, 535, 575
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	7 cut(s)	193, 413, 422, 529, 557, 566, 614
BstNI	CCWGG	3 cut(s)	464, 548, 557
BstSCI	CCNGG	4 cut(s)	387, 462, 546, 555
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	407, 437, 560
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	4 cut(s)	265, 408, 458, 645
BtsIMutI	CAGTG	3 cut(s)	56, 545, 657
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	4 cut(s)	96, 391, 435, 436
CseI	GACGC	2 cut(s)	263, 515
Csp6I	GTAC	1 cut(s)	316
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	2 cut(s)	270, 368
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	3 cut(s)	445, 537, 577
DpnII	GATC	3 cut(s)	443, 535, 575
DraIII	CACNNNGTG	1 cut(s)	371
DrdI	GACNNNNNNGTC	1 cut(s)	599
DseDI	GACNNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	2 cut(s)	142, 287
EarI	CTCTTC	2 cut(s)	142, 287
EciI	GGCGGA	1 cut(s)	556
Ecl136II	GAGCTC	2 cut(s)	202, 223
Eco130I	CCWWGG	2 cut(s)	269, 375
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	3 cut(s)	204, 225, 439
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	96, 391
Eco53kI	GAGCTC	2 cut(s)	202, 223
EcoICRI	GAGCTC	2 cut(s)	202, 223
EcoNI	CCTNNNNNAGG	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	3 cut(s)	462, 546, 555
EcoT14I	CCWWGG	2 cut(s)	269, 375
EcoT38I	GRGCYC	3 cut(s)	204, 225, 439
ErhI	CCWWGG	2 cut(s)	269, 375
FaeI	CATG	2 cut(s)	273, 371
FaiI	YATR	2 cut(s)	271, 369
FatI	CATG	2 cut(s)	269, 367
FauI	CCCGC	1 cut(s)	491
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	1 cut(s)	214
FokI	GGATG	4 cut(s)	252, 395, 445, 652
FriOI	GRGCYC	3 cut(s)	204, 225, 439
Fsp4HI	GCNGC	1 cut(s)	214
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	214
GsuI	CTGGAG	2 cut(s)	127, 539
HaeIII	GGCC	3 cut(s)	407, 437, 560
HapII	CCGG	3 cut(s)	35, 94, 388
HgaI	GACGC	2 cut(s)	263, 515
HhaI	GCGC	1 cut(s)	196
Hin1I	GRCGYC	2 cut(s)	274, 507
Hin1II	CATG	2 cut(s)	273, 371
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	53, 129
HpaII	CCGG	3 cut(s)	35, 94, 388
HphI	GGTGA	2 cut(s)	248, 277
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	6 cut(s)	82, 91, 448, 499, 575, 580
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	5 cut(s)	50, 86, 117, 137, 140
HpyAV	CCTTC	5 cut(s)	81, 159, 312, 571, 580
HpyCH4III	ACNGT	2 cut(s)	60, 122
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	7 cut(s)	193, 413, 422, 529, 557, 566, 614
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	2 cut(s)	274, 507
Hsp92II	CATG	2 cut(s)	273, 371
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	443, 535, 575
LmnI	GCTCC	3 cut(s)	83, 146, 207
LweI	GCATC	1 cut(s)	408
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	3 cut(s)	445, 537, 577
MboI	GATC	3 cut(s)	443, 535, 575
MboII	GAAGA	3 cut(s)	159, 239, 274
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	3 cut(s)	204, 225, 439
MmeI	TCCRAC	4 cut(s)	105, 114, 229, 471
MspI	CCGG	3 cut(s)	35, 94, 388
MspR9I	CCNGG	4 cut(s)	389, 464, 548, 557
MvaI	CCWGG	3 cut(s)	464, 548, 557
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	7 cut(s)	193, 413, 422, 529, 557, 566, 614
NciI	CCSGG	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	3 cut(s)	443, 535, 575
NlaIII	CATG	2 cut(s)	273, 371
NlaIV	GGNNCC	5 cut(s)	142, 373, 392, 437, 545
NmeAIII	GCCGAG	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	122
PceI	AGGCCT	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	53, 129
PflFI	GACNNNGTC	2 cut(s)	389, 509
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	391
Psp124BI	GAGCTC	2 cut(s)	204, 225
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	3 cut(s)	462, 546, 555
PspGI	CCWGG	3 cut(s)	462, 546, 555
PspN4I	GGNNCC	5 cut(s)	142, 373, 392, 437, 545
PspOMI	GGGCCC	1 cut(s)	435
PspPI	GGNCC	4 cut(s)	96, 391, 435, 436
PspPPI	RGGWCCY	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	443
PsyI	GACNNNGTC	2 cut(s)	389, 509
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	2 cut(s)	204, 225
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	443, 535, 575
Sau96I	GGNCC	4 cut(s)	96, 391, 435, 436
ScrFI	CCNGG	4 cut(s)	389, 464, 548, 557
SduI	GDGCHC	3 cut(s)	204, 225, 439
SfaNI	GCATC	1 cut(s)	408
SinI	GGWCC	2 cut(s)	96, 391
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	5 cut(s)	213, 350, 357, 484, 567
SstI	GAGCTC	2 cut(s)	204, 225
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	4 cut(s)	387, 462, 546, 555
StyI	CCWWGG	2 cut(s)	269, 375
TaaI	ACNGT	2 cut(s)	60, 122
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	101, 132, 402
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	53, 129
TscAI	CASTG	3 cut(s)	63, 545, 664
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspRI	CASTG	3 cut(s)	63, 545, 664
Tth111I	GACNNNGTC	2 cut(s)	389, 509
VpaK11BI	GGWCC	2 cut(s)	96, 391
XagI	CCTNNNNNAGG	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmiI	GTMKAC	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.