Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

10940023 .. 10940903

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCCGAGTGGTTAAGGAGACAGACTCGAAATCTGTTGGGCTTTGCCTGCGCAGGTTCGAATCCTGCTGTCGACGTTTGTTTTCTATTTTCCGTTTTCCAAACTAATAAATTTCCGGGGTTCGAAATCGTCATTATACATGAAAATATTAAAACGCGAAGCTGCGTTCTTTTTTTTCTTTTATATTTTTCCACGAACAAATCATATTATATTTTCTTTTTAAAAGGGCAAATTCGTCATTACAAATCAAAATCCAAAGCAATTTTTACCAATTCACTTTCCAGCTCTTTGATTTCCCTTCCCCACCCACATCCATGGGGACTCTGCACCCGAACCCAACCCACTTCCTCGCACCCGCACCCAAACCACAACCTGCGTTTCCATAGGCCGACCTCGTCGCCGCTTTCCGGGAGCTTCTACAGCAGGATCAATGCCACCTGGCCCTCCTTATCCGTTTATGCCGAGATGGCACTGACGCTGGCGAGAAATGAAAAGGCGGAGGACATGGACCGTTTGATTTGTGATCTGGAGACAGAGAGCGGGGTCCCGTGGGACAGCGATAAGGGGCTGATAAGGTTGATCAGGGCCGTTATTGGCGCGGATAGGAGGGAATCAACGGTTAGAATTTACGAGATGCTGAAGAGGAATGGGTGGGGGTGTAGTGGGGTTAAAGCAGATGAGTACATGGTTAGGGTTTTGAGTAGGGGACTGAAGAGACTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

27.54

Weight (kDa)

9.72

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	52
Acc36I	ACCTGC	2 cut(s)	44, 381
AccBSI	CCGCTC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	2 cut(s)	157, 599
AciI	CCGC	5 cut(s)	356, 401, 497, 540, 599
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	3 cut(s)	110, 231, 624
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	3 cut(s)	162, 285, 414
AluI	AGCT	3 cut(s)	162, 285, 414
Alw26I	GTCTC	3 cut(s)	13, 524, 709
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	3 cut(s)	386, 440, 585
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	3 cut(s)	110, 231, 624
AspLEI	GCGC	2 cut(s)	53, 599
AspS9I	GGNCC	4 cut(s)	441, 508, 544, 585
AsuC2I	CCSGG	2 cut(s)	117, 409
AsuII	TTCGAA	2 cut(s)	59, 123
AvaII	GGWCC	2 cut(s)	508, 544
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	460
BceAI	ACGGC	1 cut(s)	572
BciT130I	CCWGG	1 cut(s)	439
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	2 cut(s)	117, 409
BcoDI	GTCTC	3 cut(s)	13, 524, 709
BfmI	CTRYAG	1 cut(s)	418
BfuAI	ACCTGC	2 cut(s)	44, 381
BglI	GCCNNNNNGGC	1 cut(s)	467
BisI	GCNGC	2 cut(s)	163, 401
BlsI	GCNGC	2 cut(s)	164, 402
Bme1390I	CCNGG	3 cut(s)	117, 409, 439
Bme18I	GGWCC	2 cut(s)	508, 544
BmgT120I	GGNCC	4 cut(s)	441, 508, 544, 585
BmiI	GGNNCC	2 cut(s)	545, 546
BmrFI	CCNGG	3 cut(s)	117, 409, 439
BmsI	GCATC	1 cut(s)	624
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	548
Bpu14I	TTCGAA	2 cut(s)	59, 123
BpuMI	CCSGG	2 cut(s)	117, 409
BsaJI	CCNNGG	3 cut(s)	116, 314, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	3 cut(s)	116, 314, 548
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	310
Bsh1236I	CGCG	2 cut(s)	157, 599
BshFI	GGCC	3 cut(s)	388, 442, 587
BsiSI	CCGG	2 cut(s)	116, 408
BslFI	GGGAC	4 cut(s)	333, 530, 566, 720
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	3 cut(s)	13, 524, 709
BsmFI	GGGAC	4 cut(s)	333, 530, 566, 720
BsnI	GGCC	3 cut(s)	388, 442, 587
Bsp119I	TTCGAA	2 cut(s)	59, 123
Bsp143I	GATC	3 cut(s)	426, 523, 579
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	5 cut(s)	356, 401, 497, 540, 599
BspANI	GGCC	3 cut(s)	388, 442, 587
BspFNI	CGCG	2 cut(s)	157, 599
BspLI	GGNNCC	2 cut(s)	545, 546
BspMI	ACCTGC	2 cut(s)	44, 381
BspPI	GGATC	1 cut(s)	434
BspT104I	TTCGAA	2 cut(s)	59, 123
BsrBI	CCGCTC	1 cut(s)	540
BssECI	CCNNGG	3 cut(s)	116, 314, 548
BssMI	GATC	3 cut(s)	426, 523, 579
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	512, 619
Bst6I	CTCTTC	2 cut(s)	635, 707
BstBI	TTCGAA	2 cut(s)	59, 123
BstC8I	GCNNGC	2 cut(s)	49, 480
BstDSI	CCRYGG	2 cut(s)	314, 548
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	157, 599
BstHHI	GCGC	2 cut(s)	53, 599
BstKTI	GATC	3 cut(s)	429, 526, 582
BstMAI	GTCTC	3 cut(s)	13, 524, 709
BstMBI	GATC	3 cut(s)	426, 523, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 420, 467
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	3 cut(s)	115, 407, 437
BstSFI	CTRYAG	1 cut(s)	418
BstUI	CGCG	2 cut(s)	157, 599
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	388, 442, 587
BtgI	CCRYGG	2 cut(s)	314, 548
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	470
BveI	ACCTGC	2 cut(s)	44, 381
Cac8I	GCNNGC	2 cut(s)	49, 480
CfoI	GCGC	2 cut(s)	53, 599
Cfr13I	GGNCC	4 cut(s)	441, 508, 544, 585
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	682
CviAII	CATG	4 cut(s)	140, 315, 505, 685
CviJI	RGCY	8 cut(s)	42, 162, 285, 388, 414, 442, 568, 587
CviKI_1	RGCY	8 cut(s)	42, 162, 285, 388, 414, 442, 568, 587
CviQI	GTAC	1 cut(s)	682
DpnI	GATC	3 cut(s)	428, 525, 581
DpnII	GATC	3 cut(s)	426, 523, 579
DraI	TTTAAA	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	635, 707
EarI	CTCTTC	2 cut(s)	635, 707
EciI	GGCGGA	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	508, 544
Eco57I	CTGAAG	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	4 cut(s)	143, 318, 508, 688
FaqI	GGGAC	4 cut(s)	333, 530, 566, 720
FatI	CATG	4 cut(s)	139, 314, 504, 684
FauI	CCCGC	2 cut(s)	363, 533
FbaI	TGATCA	1 cut(s)	579
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	163, 401
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	2 cut(s)	163, 401
FspI	TGCGCA	1 cut(s)	52
GlaI	GCGC	2 cut(s)	52, 598
GluI	GCNGC	2 cut(s)	163, 401
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	388, 442, 587
HapII	CCGG	2 cut(s)	116, 408
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	2 cut(s)	53, 599
Hin1II	CATG	4 cut(s)	143, 318, 508, 688
Hin6I	GCGC	2 cut(s)	51, 597
HinP1I	GCGC	2 cut(s)	51, 597
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	4 cut(s)	25, 61, 321, 611
HpaII	CCGG	2 cut(s)	116, 408
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	527
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	77, 400
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	512, 619
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 420, 467
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	4 cut(s)	143, 318, 508, 688
HspAI	GCGC	2 cut(s)	51, 597
KflI	GGGWCCC	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	426, 523, 579
LmnI	GCTCC	1 cut(s)	411
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	624
MaeII	ACGT	1 cut(s)	75
MalI	GATC	3 cut(s)	428, 525, 581
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	3 cut(s)	426, 523, 579
MboII	GAAGA	2 cut(s)	652, 724
MluCI	AATT	5 cut(s)	110, 231, 261, 271, 624
MlyI	GAGTC	2 cut(s)	19, 315
MnlI	CCTC	6 cut(s)	358, 403, 454, 493, 600, 636
MseI	TTAA	4 cut(s)	14, 150, 221, 669
MslI	CAYNNNNRTG	1 cut(s)	313
MspI	CCGG	2 cut(s)	116, 408
MspR9I	CCNGG	3 cut(s)	117, 409, 439
MvaI	CCWGG	1 cut(s)	439
MvnI	CGCG	2 cut(s)	157, 599
MwoI	GCNNNNNNNGC	3 cut(s)	48, 420, 467
NciI	CCSGG	2 cut(s)	117, 409
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	426, 523, 579
NlaIII	CATG	4 cut(s)	143, 318, 508, 688
NlaIV	GGNNCC	2 cut(s)	545, 546
NmeAIII	GCCGAG	1 cut(s)	487
NsbI	TGCGCA	1 cut(s)	52
NspV	TTCGAA	2 cut(s)	59, 123
PfeI	GAWTC	2 cut(s)	61, 611
PflFI	GACNNNGTC	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	407
PkrI	GCNGC	2 cut(s)	164, 402
PleI	GAGTC	2 cut(s)	19, 315
PpsI	GAGTC	2 cut(s)	19, 315
PpuMI	RGGWCCY	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	545, 546
PspPI	GGNCC	4 cut(s)	441, 508, 544, 585
PspPPI	RGGWCCY	1 cut(s)	544
PsyI	GACNNNGTC	1 cut(s)	394
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	4 cut(s)	14, 150, 221, 669
SatI	GCNGC	2 cut(s)	163, 401
Sau3AI	GATC	3 cut(s)	426, 523, 579
Sau96I	GGNCC	4 cut(s)	441, 508, 544, 585
SchI	GAGTC	2 cut(s)	19, 315
ScrFI	CCNGG	3 cut(s)	117, 409, 439
SetI	ASST	9 cut(s)	58, 78, 164, 287, 375, 395, 416, 440, 578
SfaNI	GCATC	1 cut(s)	624
SfcI	CTRYAG	1 cut(s)	418
SfuI	TTCGAA	2 cut(s)	59, 123
SinI	GGWCC	2 cut(s)	508, 544
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	5 cut(s)	110, 231, 261, 271, 624
SsiI	CCGC	5 cut(s)	356, 401, 497, 540, 599
SspI	AATATT	1 cut(s)	148
StyD4I	CCNGG	3 cut(s)	115, 407, 437
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	512, 619
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	4 cut(s)	28, 59, 72, 123
TasI	AATT	5 cut(s)	110, 231, 261, 271, 624
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	2 cut(s)	61, 611
Tru1I	TTAA	4 cut(s)	14, 150, 221, 669
Tru9I	TTAA	4 cut(s)	14, 150, 221, 669
TscAI	CASTG	1 cut(s)	477
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	2 cut(s)	156, 504
TspGWI	ACGGA	2 cut(s)	82, 442
TspRI	CASTG	1 cut(s)	477
Tth111I	GACNNNGTC	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	508, 544
XapI	RAATTY	3 cut(s)	110, 231, 624
XmiI	GTMKAC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.