Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

25007571 .. 25008500

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCGTCGTCTCTCCACCCAAACCCAACCACCTTCCTCCAACCCGCACGCTTACAATTCACACCCACCTCCGTCGCAACCCGCGTTCCCATACGGTGCGGCCCACGCGACAAGCGTGGACCCTTGGTCAAAGGCCGCGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGGACGACCCATCTCCCGTCTCCAAAACCCTCTCCCGCCTAATCAAATCCGACCTCGTCGCTGCCCTCAAGGAGCTTCTACGGCAGGATCAATGCCACCTGGCCCTCCAGGCCTTGGCCGCCTTCCGATCCGAATACCAACCTGACGTCACCATCTACGCCGAGGTGGCTCTGGCACTCGCCAGAAATGGGATGGTGGAGGAGATCGACGCTCTCGTCTGTGAGCTGGAGAAGGAGAGTGGAGGTGTCCAGTTGGGGGGAGATGATAAGGGGCTGATAAGGCTGATCAGGGCCGTCGTTGGCGCCGACCGGAGGGAATCGACGGTGAGGATTTACGAGATGTTGAAGAGGAATGGATGGGGGACTAGTAGTTTCAAAGCGGATGAGTATATGGTGAAGGTGTTGAGCAAAGGATTGAGGAGGCTTGGTGAGGCTCAACTTGCTGATGAGGTTGATGCCAAATTTGGTCCACAGCTGTTATTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.18

Weight (kDa)

9.17

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AatII	GACGTC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	3 cut(s)	84, 108, 138
AciI	CCGC	7 cut(s)	45, 82, 99, 136, 235, 318, 578
AclWI	GGATC	3 cut(s)	186, 294, 321
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	659
AcyI	GRCGYC	3 cut(s)	5, 345, 501
AfiI	CCNNNNNNNGG	6 cut(s)	180, 181, 313, 387, 454, 510
AgsI	TTSAA	3 cut(s)	544, 574, 683
AhdI	GACNNNNNGTC	1 cut(s)	125
AhlI	ACTAGT	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	297, 306
AluBI	AGCT	3 cut(s)	274, 424, 673
AluI	AGCT	3 cut(s)	274, 424, 673
Alw26I	GTCTC	2 cut(s)	15, 223
AlwI	GGATC	3 cut(s)	186, 294, 321
AoxI	GGCC	8 cut(s)	100, 133, 153, 183, 300, 309, 315, 489
ApaI	GGGCCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	659
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	7 cut(s)	101, 119, 183, 184, 301, 489, 665
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	4 cut(s)	340, 535, 604, 638
AvaII	GGWCC	2 cut(s)	119, 665
BaeGI	GKGCMC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	5 cut(s)	164, 217, 359, 385, 549
BceAI	ACGGC	3 cut(s)	149, 296, 476
BciT130I	CCWGG	2 cut(s)	299, 308
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	15, 223
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	504
BglI	GCCNNNNNGGC	2 cut(s)	308, 365
BisI	GCNGC	4 cut(s)	100, 136, 261, 318
BlsI	GCNGC	4 cut(s)	101, 137, 262, 319
Bme1390I	CCNGG	3 cut(s)	200, 299, 308
Bme18I	GGWCC	2 cut(s)	119, 665
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmgT120I	GGNCC	7 cut(s)	101, 119, 183, 184, 301, 489, 665
BmiI	GGNNCC	3 cut(s)	121, 185, 502
BmrFI	CCNGG	3 cut(s)	200, 299, 308
BmsI	GCATC	2 cut(s)	156, 643
BpmI	CTGGAG	2 cut(s)	290, 446
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	3 cut(s)	5, 345, 501
BsaJI	CCNNGG	3 cut(s)	123, 312, 360
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 181, 313, 387, 454, 510
Bse1I	ACTGG	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	299, 308
BseDI	CCNNGG	3 cut(s)	123, 312, 360
BseGI	GGATG	4 cut(s)	156, 396, 560, 586
BseLI	CCNNNNNNNGG	6 cut(s)	180, 181, 313, 387, 454, 510
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	2 cut(s)	413, 631
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	247
Bsh1236I	CGCG	3 cut(s)	84, 108, 138
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	8 cut(s)	102, 135, 155, 185, 302, 311, 317, 491
BshNI	GGYRCC	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	200, 508
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	6 cut(s)	180, 181, 313, 387, 454, 510
BsmAI	GTCTC	2 cut(s)	15, 223
BsmBI	CGTCTC	2 cut(s)	15, 223
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	8 cut(s)	102, 135, 155, 185, 302, 311, 317, 491
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	191, 286, 326, 402, 483
BspACI	CCGC	7 cut(s)	45, 82, 99, 136, 235, 318, 578
BspANI	GGCC	8 cut(s)	102, 135, 155, 185, 302, 311, 317, 491
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	3 cut(s)	84, 108, 138
BspLI	GGNNCC	3 cut(s)	121, 185, 502
BspPI	GGATC	3 cut(s)	186, 294, 321
BspT107I	GGYRCC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	448
BssECI	CCNNGG	3 cut(s)	123, 312, 360
BssMI	GATC	5 cut(s)	191, 286, 326, 402, 483
BssNI	GRCGYC	3 cut(s)	5, 345, 501
BssT1I	CCWWGG	2 cut(s)	123, 312
Bst2UI	CCWGG	2 cut(s)	299, 308
Bst4CI	ACNGT	2 cut(s)	96, 523
Bst6I	CTCTTC	1 cut(s)	539
BstACI	GRCGYC	3 cut(s)	5, 345, 501
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	4 cut(s)	156, 396, 560, 586
BstFNI	CGCG	3 cut(s)	84, 108, 138
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	5 cut(s)	194, 289, 329, 405, 486
BstMAI	GTCTC	2 cut(s)	15, 223
BstMBI	GATC	5 cut(s)	191, 286, 326, 402, 483
BstMCI	CGRYCG	1 cut(s)	508
BstNI	CCWGG	2 cut(s)	299, 308
BstSCI	CCNGG	3 cut(s)	198, 297, 306
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	3 cut(s)	84, 108, 138
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	8 cut(s)	102, 135, 155, 185, 302, 311, 317, 491
BtsCI	GGATG	4 cut(s)	156, 396, 560, 586
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	7 cut(s)	101, 119, 183, 184, 301, 489, 665
CseI	GACGC	2 cut(s)	127, 416
DdeI	CTNAG	1 cut(s)	143
DinI	GGCGCC	1 cut(s)	502
DpnI	GATC	5 cut(s)	193, 288, 328, 404, 485
DpnII	GATC	5 cut(s)	191, 286, 326, 402, 483
DrdI	GACNNNNNNGTC	1 cut(s)	413
DriI	GACNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	539
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	2 cut(s)	123, 312
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	119, 665
EcoRII	CCWGG	2 cut(s)	297, 306
EcoT14I	CCWWGG	2 cut(s)	123, 312
EcoT38I	GRGCYC	1 cut(s)	187
EgeI	GGCGCC	1 cut(s)	502
EheI	GGCGCC	1 cut(s)	502
ErhI	CCWWGG	2 cut(s)	123, 312
Esp3I	CGTCTC	2 cut(s)	15, 223
FaiI	YATR	3 cut(s)	92, 588, 590
FaqI	GGGAC	1 cut(s)	574
FauI	CCCGC	3 cut(s)	52, 89, 242
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	4 cut(s)	100, 136, 261, 318
FokI	GGATG	4 cut(s)	143, 403, 567, 593
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	4 cut(s)	100, 136, 261, 318
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	4 cut(s)	100, 136, 261, 318
GsuI	CTGGAG	2 cut(s)	290, 446
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	8 cut(s)	102, 135, 155, 185, 302, 311, 317, 491
HapII	CCGG	2 cut(s)	200, 508
HgaI	GACGC	2 cut(s)	127, 416
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	3 cut(s)	5, 345, 501
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	1 cut(s)	515
HpaII	CCGG	2 cut(s)	200, 508
HphI	GGTGA	4 cut(s)	340, 535, 604, 638
Hpy166II	GTNNAC	2 cut(s)	119, 668
Hpy188I	TCNGA	4 cut(s)	196, 250, 326, 331
Hpy188III	TCNNGA	1 cut(s)	687
Hpy8I	GTNNAC	2 cut(s)	119, 668
Hpy99I	CGWCG	6 cut(s)	10, 77, 260, 410, 497, 523
HpyAV	CCTTC	4 cut(s)	43, 331, 424, 589
HpyCH4III	ACNGT	2 cut(s)	96, 523
HpyCH4IV	ACGT	1 cut(s)	345
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	3 cut(s)	5, 345, 501
HspAI	GCGC	1 cut(s)	501
KasI	GGCGCC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	5 cut(s)	191, 286, 326, 402, 483
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	156, 643
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	5 cut(s)	193, 288, 328, 404, 485
MboI	GATC	5 cut(s)	191, 286, 326, 402, 483
MboII	GAAGA	1 cut(s)	556
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	2 cut(s)	56, 659
Mly113I	GGCGCC	1 cut(s)	501
MmeI	TCCRAC	3 cut(s)	64, 219, 273
MspA1I	CMGCKG	1 cut(s)	673
MspI	CCGG	2 cut(s)	200, 508
MspR9I	CCNGG	3 cut(s)	200, 299, 308
MvaI	CCWGG	2 cut(s)	299, 308
MvnI	CGCG	3 cut(s)	84, 108, 138
NarI	GGCGCC	1 cut(s)	501
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	5 cut(s)	191, 286, 326, 402, 483
NlaIV	GGNNCC	3 cut(s)	121, 185, 502
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	346
PceI	AGGCCT	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 112, 411, 501
PfeI	GAWTC	1 cut(s)	515
PflFI	GACNNNGTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	4 cut(s)	101, 137, 262, 319
PluTI	GGCGCC	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	297, 306
PspGI	CCWGG	2 cut(s)	297, 306
PspN4I	GGNNCC	3 cut(s)	121, 185, 502
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	7 cut(s)	101, 119, 183, 184, 301, 489, 665
PsuI	RGATCY	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	673
SatI	GCNGC	4 cut(s)	100, 136, 261, 318
Sau3AI	GATC	5 cut(s)	191, 286, 326, 402, 483
Sau96I	GGNCC	7 cut(s)	101, 119, 183, 184, 301, 489, 665
ScrFI	CCNGG	3 cut(s)	200, 299, 308
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	156, 643
SfiI	GGCCNNNNNGGCC	1 cut(s)	308
SfoI	GGCGCC	1 cut(s)	502
SinI	GGWCC	2 cut(s)	119, 665
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	2 cut(s)	56, 659
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	7 cut(s)	45, 82, 99, 136, 235, 318, 578
SspDI	GGCGCC	1 cut(s)	500
SspMI	CTAG	1 cut(s)	564
StuI	AGGCCT	1 cut(s)	311
StyD4I	CCNGG	3 cut(s)	198, 297, 306
StyI	CCWWGG	2 cut(s)	123, 312
TaaI	ACNGT	2 cut(s)	96, 523
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	3 cut(s)	150, 405, 518
TasI	AATT	2 cut(s)	56, 659
TauI	GCSGC	3 cut(s)	102, 138, 320
TfiI	GAWTC	1 cut(s)	515
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	346
TspGWI	ACGGA	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	254
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	119, 665
XapI	RAATTY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	1 cut(s)	564
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.