Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

7905367 .. 7905873

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGTCCTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCCGTACCCAGACCATTCACAACCACACCCACCCCCACCGTAGTCCGCGTTCCCACACGGTGCCTTGGTCAAAGACCAGGTCCTCAGCATCGAGGCCATCCAAGCTGTCCAAGCCCTCAAACGGCCCAAAGATCTGACCCGAACCAATCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCAGACCTTGACGCCGTCCTCAAAGAGCTTCTACGGCAGGATCAGTGGCACCTGGCTCTCCAGGCCTTCTCCCCCTTCCGATCCGAATACCAACCCGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCTCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACTCTGGTTTGTGAGCTCGAAAAGGAGAGTGAGGAGTCCAGTGGGACAGTGACAATGTTAAGTGGTTTCGGAGATGAGAGAGAGAGAGAGAGAGAGAATCTGACTTCAAGGGTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.77

Weight (kDa)

6.09

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccB1I	GGYRCC	2 cut(s)	102, 273
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	88, 214
AclWI	GGATC	2 cut(s)	273, 300
AcyI	GRCGYC	2 cut(s)	5, 237
AdeI	CACNNNGTG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	163, 193, 366
AgsI	TTSAA	1 cut(s)	495
AjnI	CCWGG	4 cut(s)	118, 192, 276, 285
AluBI	AGCT	3 cut(s)	147, 253, 403
AluI	AGCT	3 cut(s)	147, 253, 403
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	273, 300
AoxI	GGCC	3 cut(s)	136, 165, 288
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspS9I	GGNCC	2 cut(s)	122, 166
AsuHPI	GGTGA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	102, 273
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BbvCI	CCTCAGC	1 cut(s)	126
BccI	CCATC	2 cut(s)	147, 364
BceAI	ACGGC	3 cut(s)	180, 224, 275
BciT130I	CCWGG	4 cut(s)	120, 194, 278, 287
BcoDI	GTCTC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	173
Bme1390I	CCNGG	4 cut(s)	120, 194, 278, 287
Bme18I	GGWCC	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	122, 166
BmiI	GGNNCC	2 cut(s)	104, 275
BmrFI	CCNGG	4 cut(s)	120, 194, 278, 287
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	126
BsaHI	GRCGYC	2 cut(s)	5, 237
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	106, 192, 339
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 193, 366
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	4 cut(s)	120, 194, 278, 287
BseDI	CCNNGG	3 cut(s)	106, 192, 339
BseGI	GGATG	2 cut(s)	139, 375
BseLI	CCNNNNNNNGG	3 cut(s)	163, 193, 366
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	2 cut(s)	392, 434
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	3 cut(s)	138, 167, 290
BshNI	GGYRCC	2 cut(s)	102, 273
BsiHKAI	GWGCWC	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	3 cut(s)	163, 193, 366
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	138, 167, 290
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	173, 265, 305
BspACI	CCGC	2 cut(s)	88, 214
BspANI	GGCC	3 cut(s)	138, 167, 290
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	104, 275
BspPI	GGATC	2 cut(s)	273, 300
BspT107I	GGYRCC	2 cut(s)	102, 273
BspTNI	GGTCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	106, 192, 339
BssMI	GATC	3 cut(s)	173, 265, 305
BssNI	GRCGYC	2 cut(s)	5, 237
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	4 cut(s)	120, 194, 278, 287
Bst4CI	ACNGT	3 cut(s)	82, 102, 436
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	5, 237
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	2 cut(s)	139, 375
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	176, 268, 308
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	173, 265, 305
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 153, 259, 287, 344
BstNI	CCWGG	4 cut(s)	120, 194, 278, 287
BstSCI	CCNGG	4 cut(s)	118, 192, 276, 285
BstUI	CGCG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	138, 167, 290
BtsCI	GGATG	2 cut(s)	139, 375
BtsIMutI	CAGTG	3 cut(s)	275, 433, 441
Cfr13I	GGNCC	2 cut(s)	122, 166
CseI	GACGC	1 cut(s)	245
CsiI	ACCWGGT	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	47
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	175, 267, 307
DpnII	GATC	3 cut(s)	173, 265, 305
DraIII	CACNNNGTG	1 cut(s)	102
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	4 cut(s)	118, 192, 276, 285
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	106
FaqI	GGGAC	1 cut(s)	445
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	2 cut(s)	126, 382
FriOI	GRGCYC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	3 cut(s)	138, 167, 290
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	2 cut(s)	5, 237
HinfI	GANTC	2 cut(s)	422, 484
HphI	GGTGA	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	6 cut(s)	178, 229, 305, 310, 458, 489
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	3 cut(s)	43, 301, 310
HpyCH4III	ACNGT	3 cut(s)	82, 102, 436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 153, 259, 287, 344
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	2 cut(s)	5, 237
Kzo9I	GATC	3 cut(s)	173, 265, 305
LweI	GCATC	1 cut(s)	139
MabI	ACCWGGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	175, 267, 307
MboI	GATC	3 cut(s)	173, 265, 305
MboII	GAAGA	1 cut(s)	5
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	431
MseI	TTAA	1 cut(s)	446
MspR9I	CCNGG	4 cut(s)	120, 194, 278, 287
MvaI	CCWGG	4 cut(s)	120, 194, 278, 287
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	144, 153, 259, 287, 344
NdeII	GATC	3 cut(s)	173, 265, 305
NlaIV	GGNNCC	2 cut(s)	104, 275
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	484
PflFI	GACNNNGTC	2 cut(s)	120, 239
PflMI	CCANNNNNTGG	1 cut(s)	193
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PpuMI	RGGWCCY	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	4 cut(s)	118, 192, 276, 285
PspGI	CCWGG	4 cut(s)	118, 192, 276, 285
PspN4I	GGNNCC	2 cut(s)	104, 275
PspPI	GGNCC	2 cut(s)	122, 166
PspPPI	RGGWCCY	1 cut(s)	122
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	2 cut(s)	120, 239
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	446
Sau3AI	GATC	3 cut(s)	173, 265, 305
Sau96I	GGNCC	2 cut(s)	122, 166
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	4 cut(s)	120, 194, 278, 287
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	9 cut(s)	35, 124, 149, 234, 255, 279, 327, 345, 405
SexAI	ACCWGGT	1 cut(s)	118
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	122
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	2 cut(s)	88, 214
SstI	GAGCTC	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	4 cut(s)	118, 192, 276, 285
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	82, 102, 436
TaqI	TCGA	2 cut(s)	133, 405
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	3 cut(s)	275, 433, 441
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	3 cut(s)	275, 433, 441
Tth111I	GACNNNGTC	2 cut(s)	120, 239
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.