Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

22569174 .. 22569923

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1189400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCACCTTTTACCACCTCCACCTTCTTGCTCTTCTCCACTCGCATCCATGGCTTCCTCACTGCACACGAACGCAACCCACTTCCTCTCACCCAAACCAGTCGCACAGACACCTACCCGCTCCACAACCCGCGTTTCCATACGGTGCGGTCCACGCGACAACCGTGGACCTTTGGTCAAAGGTCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTTCAAACCCTCAAACGGGCGCAAAGATCCGACCCGGCCCAATTCCCCGCCCTTGTCTCCAAAACCCTCTCCCGCCTGATCAAAGCCGACCTCGTCGCCGCTCTTAGGGAGCTTCTACGTCAGGACCAGTGCCACCTGGCCCTCCAAGTCTTCTCCGCCGTCCGATCGGAATACCCGCCCGACTTATCCGTTTACGCTGAGATGGCGCTGGCGCTGGCGAGAAATGAGATGGGGGAGGACATGGACCGTTTGATTTGTGATCTGGAGACAGAGAGTGGGGTCCAGTGGGGCAGCGATAAGGGGCTGATAAGGTTGATCAGGGCCGTTATTGGGGCGGATAGGAGGGAATCAACGGTCAGGATTTACAAGATGCTGAAGAGGAATGGGTGGGGGTCCACTGGGTTTGAAGCGGATGAGTATATGGTTAGGGTTTTGAGTAAGGGATTGAGGAGACTTGGGGAGGTTGGGTTGGCTGATGAGGTTGATTTGAAATTCGGGAGCCTTTTGAAGGGTAGTTTGGAGAATTCAAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.35

Weight (kDa)

9.41

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	120, 314
AccII	CGCG	2 cut(s)	132, 156
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	704, 736
AcuI	CTGAAG	1 cut(s)	608
AfiI	CCNNNNNNNGG	5 cut(s)	228, 229, 318, 543, 721
AgsI	TTSAA	5 cut(s)	218, 620, 703, 721, 741
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	348
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	3 cut(s)	274, 473, 658
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	4 cut(s)	201, 249, 351, 534
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	2 cut(s)	704, 736
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AspLEI	GCGC	3 cut(s)	235, 421, 427
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	81
AvaII	GGWCC	7 cut(s)	149, 167, 187, 337, 457, 493, 606
BbsI	GAAGAC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	3 cut(s)	212, 409, 436
BceAI	ACGGC	3 cut(s)	197, 356, 521
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	2 cut(s)	291, 528
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	274, 473, 658
BfoI	RGCGCY	2 cut(s)	422, 428
BisI	GCNGC	2 cut(s)	312, 505
BlsI	GCNGC	2 cut(s)	313, 506
Bme1390I	CCNGG	2 cut(s)	248, 350
Bme18I	GGWCC	7 cut(s)	149, 167, 187, 337, 457, 493, 606
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmiI	GGNNCC	4 cut(s)	188, 494, 607, 713
BmrFI	CCNGG	2 cut(s)	248, 350
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	3 cut(s)	53, 204, 573
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	48, 163
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bsc4I	CCNNNNNNNGG	5 cut(s)	228, 229, 318, 543, 721
Bse1I	ACTGG	4 cut(s)	98, 340, 496, 616
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	48, 163
BseGI	GGATG	3 cut(s)	44, 204, 631
BseLI	CCNNNNNNNGG	5 cut(s)	228, 229, 318, 543, 721
BseMII	CTCAG	2 cut(s)	205, 402
BseNI	ACTGG	4 cut(s)	98, 340, 496, 616
BseRI	GAGGAG	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	516
BsgI	GTGCAG	1 cut(s)	47
Bsh1236I	CGCG	2 cut(s)	132, 156
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	4 cut(s)	203, 251, 353, 536
BsiEI	CGRYCG	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	5 cut(s)	228, 229, 318, 543, 721
BsmAI	GTCTC	3 cut(s)	274, 473, 658
BsnI	GGCC	4 cut(s)	203, 251, 353, 536
Bsp143I	GATC	5 cut(s)	239, 291, 377, 472, 528
Bsp19I	CCATGG	1 cut(s)	48
BspANI	GGCC	4 cut(s)	203, 251, 353, 536
BspCNI	CTCAG	2 cut(s)	204, 403
BspFNI	CGCG	2 cut(s)	132, 156
BspLI	GGNNCC	4 cut(s)	188, 494, 607, 713
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	37
BsrBI	CCGCTC	2 cut(s)	120, 314
BsrI	ACTGG	4 cut(s)	98, 340, 496, 616
BssECI	CCNNGG	2 cut(s)	48, 163
BssMI	GATC	5 cut(s)	239, 291, 377, 472, 528
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	4 cut(s)	144, 164, 461, 568
Bst6I	CTCTTC	2 cut(s)	37, 584
BstC8I	GCNNGC	2 cut(s)	423, 429
BstDEI	CTNAG	3 cut(s)	191, 317, 411
BstDSI	CCRYGG	2 cut(s)	48, 163
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	44, 204, 631
BstFNI	CGCG	2 cut(s)	132, 156
BstH2I	RGCGCY	2 cut(s)	422, 428
BstHHI	GCGC	3 cut(s)	235, 421, 427
BstKTI	GATC	5 cut(s)	242, 294, 380, 475, 531
BstMAI	GTCTC	3 cut(s)	274, 473, 658
BstMBI	GATC	5 cut(s)	239, 291, 377, 472, 528
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 153, 209, 416
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	246, 348
BstUI	CGCG	2 cut(s)	132, 156
BstV1I	GCAGC	1 cut(s)	516
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	203, 251, 353, 536
BtgI	CCRYGG	2 cut(s)	48, 163
BtsCI	GGATG	3 cut(s)	44, 204, 631
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	4 cut(s)	59, 347, 503, 609
Cac8I	GCNNGC	2 cut(s)	423, 429
CfoI	GCGC	3 cut(s)	235, 421, 427
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviAII	CATG	2 cut(s)	49, 454
DdeI	CTNAG	3 cut(s)	191, 317, 411
DpnI	GATC	5 cut(s)	241, 293, 379, 474, 530
DpnII	GATC	5 cut(s)	239, 291, 377, 472, 528
DriI	GACNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	37, 584
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	2 cut(s)	37, 584
EciI	GGCGGA	2 cut(s)	358, 563
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	7 cut(s)	149, 167, 187, 337, 457, 493, 606
Eco57I	CTGAAG	1 cut(s)	608
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	52, 457
FaiI	YATR	6 cut(s)	50, 140, 455, 633, 635, 748
FatI	CATG	2 cut(s)	48, 453
FauI	CCCGC	5 cut(s)	125, 137, 268, 293, 396
FbaI	TGATCA	2 cut(s)	291, 528
Fnu4HI	GCNGC	2 cut(s)	312, 505
FokI	GGATG	3 cut(s)	31, 191, 638
Fsp4HI	GCNGC	2 cut(s)	312, 505
GlaI	GCGC	3 cut(s)	234, 420, 426
GluI	GCNGC	2 cut(s)	312, 505
GsuI	CTGGAG	1 cut(s)	497
HaeII	RGCGCY	2 cut(s)	422, 428
HaeIII	GGCC	4 cut(s)	203, 251, 353, 536
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	3 cut(s)	235, 421, 427
Hin1II	CATG	2 cut(s)	52, 457
Hin6I	GCGC	3 cut(s)	233, 419, 425
HinP1I	GCGC	3 cut(s)	233, 419, 425
HinfI	GANTC	1 cut(s)	560
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	4 cut(s)	152, 167, 406, 609
Hpy188I	TCNGA	3 cut(s)	244, 377, 382
Hpy188III	TCNNGA	4 cut(s)	335, 476, 571, 709
Hpy8I	GTNNAC	4 cut(s)	152, 167, 406, 609
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	33, 715
HpyCH4III	ACNGT	4 cut(s)	144, 164, 461, 568
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	4, 64
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 153, 209, 416
HpyF3I	CTNAG	3 cut(s)	191, 317, 411
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	52, 457
HspAI	GCGC	3 cut(s)	233, 419, 425
Ksp22I	TGATCA	2 cut(s)	291, 528
Kzo9I	GATC	5 cut(s)	239, 291, 377, 472, 528
LguI	GCTCTTC	1 cut(s)	37
LmnI	GCTCC	3 cut(s)	125, 322, 711
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	3 cut(s)	53, 204, 573
MaeII	ACGT	1 cut(s)	331
MalI	GATC	5 cut(s)	241, 293, 379, 474, 530
MbiI	CCGCTC	2 cut(s)	120, 314
MboI	GATC	5 cut(s)	239, 291, 377, 472, 528
MboII	GAAGA	3 cut(s)	24, 355, 601
MflI	RGATCY	1 cut(s)	239
MluCI	AATT	3 cut(s)	254, 704, 736
MmeI	TCCRAC	1 cut(s)	267
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	248, 350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	132, 156
MwoI	GCNNNNNNNGC	4 cut(s)	50, 153, 209, 416
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	239, 291, 377, 472, 528
NlaIII	CATG	2 cut(s)	52, 457
NlaIV	GGNNCC	4 cut(s)	188, 494, 607, 713
PciSI	GCTCTTC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	560
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	313, 506
Ple19I	CGATCG	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	4 cut(s)	188, 494, 607, 713
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	305
PvuI	CGATCG	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	37
SatI	GCNGC	2 cut(s)	312, 505
Sau3AI	GATC	5 cut(s)	239, 291, 377, 472, 528
ScrFI	CCNGG	2 cut(s)	248, 350
SfaNI	GCATC	3 cut(s)	53, 204, 573
SinI	GGWCC	7 cut(s)	149, 167, 187, 337, 457, 493, 606
Sse9I	AATT	3 cut(s)	254, 704, 736
StyD4I	CCNGG	2 cut(s)	246, 348
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	4 cut(s)	144, 164, 461, 568
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	254, 704, 736
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	560
TscAI	CASTG	4 cut(s)	66, 347, 503, 616
TseI	GCWGC	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	391
TspRI	CASTG	4 cut(s)	66, 347, 503, 616
Tth111I	GACNNNGTC	1 cut(s)	305
VpaK11BI	GGWCC	7 cut(s)	149, 167, 187, 337, 457, 493, 606
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	2 cut(s)	704, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.