Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

56905889 .. 56906590

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019805

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGTCCTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCCGTACCCAGACCATTCACAACCACGCCCACCCCCACCGTAGTCCGCGTTCCGGTACTGTGCGGCCCACGCGACAAGCGTGGACCCTTGGTCAAAGGCCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGGACCCATCCCACCTCCCCGCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCCGACCTCGTCGCCGCCCTCAAAGAGCTTCTGCGGCAGGATCAGTGCCACCTGGCCCTCCAGGCCTTCTCCGCCTTCCGATCCGAATACCAACCCGACCTGTCTGTCTGCGCCGAGGTGGCTTTGGCGCTCGCCAGAAATGGGATGGGGGAGGAGATAGACACTCTGGTTTGTGAGCTCGAAAAGGAGAGCGGAGTCGTCCAGTGGGACAGTGATAAGGGCCTGATAAGGTTGATCAAGGCCGTCATTGGCGCCGACCGGAGGGAATCGACGGTCAGGATTTACGAGATGCTGAAGAGGAATGGATGGGGGTCTAGTAGTTTTAAAGCGGATGAGTATATGGTTAGGGTGTTGAGCAAGGGATTGAGGAGGTTTGGTGAGGCTGAACTAGCTGATGAGGTTGATGTCAAATTTGGTCCACAGCTGTTATTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.78

Weight (kDa)

9.08

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	453
AccII	CGCG	2 cut(s)	90, 114
AciI	CCGC	9 cut(s)	88, 105, 225, 250, 276, 295, 333, 453, 590
AclWI	GGATC	3 cut(s)	192, 309, 336
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	575
AcyI	GRCGYC	2 cut(s)	5, 513
AfaI	GTAC	2 cut(s)	48, 99
AfiI	CCNNNNNNNGG	6 cut(s)	94, 186, 187, 229, 402, 522
AgsI	TTSAA	1 cut(s)	695
AhdI	GACNNNNNGTC	1 cut(s)	131
AjnI	CCWGG	3 cut(s)	228, 312, 321
AluBI	AGCT	4 cut(s)	289, 439, 653, 685
AluI	AGCT	4 cut(s)	289, 439, 653, 685
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	3 cut(s)	192, 309, 336
AoxI	GGCC	8 cut(s)	106, 139, 159, 189, 315, 324, 481, 501
ApaI	GGGCCC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	671
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspLEI	GCGC	3 cut(s)	374, 391, 515
AspS9I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 481, 677
AsuC2I	CCSGG	2 cut(s)	143, 206
AsuHPI	GGTGA	2 cut(s)	8, 650
AvaII	GGWCC	4 cut(s)	125, 145, 208, 677
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	2 cut(s)	193, 441
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	149
BccI	CCATC	4 cut(s)	170, 220, 400, 561
BceAI	ACGGC	2 cut(s)	155, 488
BciT130I	CCWGG	3 cut(s)	230, 314, 323
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	2 cut(s)	143, 206
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	576, 650
BfoI	RGCGCY	2 cut(s)	392, 516
BglI	GCCNNNNNGGC	2 cut(s)	323, 380
BisI	GCNGC	3 cut(s)	106, 276, 296
BlsI	GCNGC	3 cut(s)	107, 277, 297
Bme1390I	CCNGG	5 cut(s)	143, 206, 230, 314, 323
Bme18I	GGWCC	4 cut(s)	125, 145, 208, 677
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmgT120I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 481, 677
BmiI	GGNNCC	5 cut(s)	127, 146, 191, 210, 514
BmrFI	CCNGG	5 cut(s)	143, 206, 230, 314, 323
BmsI	GCATC	2 cut(s)	162, 540
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	143, 206
BsaHI	GRCGYC	2 cut(s)	5, 513
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	129, 228, 375
BsaWI	WCCGGW	2 cut(s)	94, 519
BsaXI	ACNNNNNCTCC	2 cut(s)	622, 652
Bsc4I	CCNNNNNNNGG	6 cut(s)	94, 186, 187, 229, 402, 522
Bse1I	ACTGG	1 cut(s)	463
BseBI	CCWGG	3 cut(s)	230, 314, 323
BseDI	CCNNGG	3 cut(s)	129, 228, 375
BseGI	GGATG	5 cut(s)	162, 212, 411, 572, 598
BseLI	CCNNNNNNNGG	6 cut(s)	94, 186, 187, 229, 402, 522
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	2 cut(s)	428, 643
BseSI	GKGCMC	1 cut(s)	193
Bsh1236I	CGCG	2 cut(s)	90, 114
Bsh1285I	CGRYCG	1 cut(s)	520
BshFI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 483, 503
BshNI	GGYRCC	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	4 cut(s)	95, 142, 206, 520
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	6 cut(s)	94, 186, 187, 229, 402, 522
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 483, 503
Bso31I	GGTCTC	1 cut(s)	238
Bsp120I	GGGCCC	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	193, 441
Bsp143I	GATC	4 cut(s)	197, 301, 341, 495
BspACI	CCGC	9 cut(s)	88, 105, 225, 250, 276, 295, 333, 453, 590
BspANI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 483, 503
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	90, 114
BspLI	GGNNCC	5 cut(s)	127, 146, 191, 210, 514
BspPI	GGATC	3 cut(s)	192, 309, 336
BspT107I	GGYRCC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	3 cut(s)	129, 228, 375
BssMI	GATC	4 cut(s)	197, 301, 341, 495
BssNI	GRCGYC	2 cut(s)	5, 513
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	230, 314, 323
Bst4CI	ACNGT	4 cut(s)	82, 102, 473, 535
Bst6I	CTCTTC	2 cut(s)	18, 551
BstACI	GRCGYC	2 cut(s)	5, 513
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	5 cut(s)	162, 212, 411, 572, 598
BstFNI	CGCG	2 cut(s)	90, 114
BstH2I	RGCGCY	2 cut(s)	392, 516
BstHHI	GCGC	3 cut(s)	374, 391, 515
BstKTI	GATC	4 cut(s)	200, 304, 344, 498
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	4 cut(s)	197, 301, 341, 495
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 167, 176, 295, 323, 332, 380, 650
BstNI	CCWGG	3 cut(s)	230, 314, 323
BstSCI	CCNGG	5 cut(s)	141, 204, 228, 312, 321
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	2 cut(s)	90, 114
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 483, 503
BtsCI	GGATG	5 cut(s)	162, 212, 411, 572, 598
BtsIMutI	CAGTG	3 cut(s)	311, 470, 478
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	3 cut(s)	374, 391, 515
Cfr13I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 481, 677
Csp6I	GTAC	2 cut(s)	47, 98
CviQI	GTAC	2 cut(s)	47, 98
DdeI	CTNAG	1 cut(s)	149
DinI	GGCGCC	1 cut(s)	514
DpnI	GATC	4 cut(s)	199, 303, 343, 497
DpnII	GATC	4 cut(s)	197, 301, 341, 495
DraI	TTTAAA	1 cut(s)	586
DrdI	GACNNNNNNGTC	1 cut(s)	365
DriI	GACNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	18, 551
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EarI	CTCTTC	2 cut(s)	18, 551
EciI	GGCGGA	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	326
Eco24I	GRGCYC	2 cut(s)	193, 441
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	4 cut(s)	125, 145, 208, 677
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	439
EcoO109I	RGGNCCY	2 cut(s)	145, 481
EcoRII	CCWGG	3 cut(s)	228, 312, 321
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	193, 441
EgeI	GGCGCC	1 cut(s)	514
EheI	GGCGCC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	129
FaiI	YATR	2 cut(s)	600, 602
FaqI	GGGAC	1 cut(s)	482
FauI	CCCGC	2 cut(s)	232, 257
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	106, 276, 296
FokI	GGATG	5 cut(s)	149, 199, 418, 579, 605
FriOI	GRGCYC	2 cut(s)	193, 441
Fsp4HI	GCNGC	3 cut(s)	106, 276, 296
FspBI	CTAG	2 cut(s)	576, 650
GlaI	GCGC	3 cut(s)	373, 390, 514
GluI	GCNGC	3 cut(s)	106, 276, 296
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	2 cut(s)	392, 516
HaeIII	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 483, 503
HapII	CCGG	4 cut(s)	95, 142, 206, 520
HhaI	GCGC	3 cut(s)	374, 391, 515
Hin1I	GRCGYC	2 cut(s)	5, 513
Hin6I	GCGC	3 cut(s)	372, 389, 513
HinP1I	GCGC	3 cut(s)	372, 389, 513
HinfI	GANTC	2 cut(s)	456, 527
HpaII	CCGG	4 cut(s)	95, 142, 206, 520
HphI	GGTGA	2 cut(s)	8, 650
Hpy166II	GTNNAC	2 cut(s)	125, 680
Hpy188I	TCNGA	4 cut(s)	202, 265, 341, 346
Hpy188III	TCNNGA	2 cut(s)	538, 699
Hpy8I	GTNNAC	2 cut(s)	125, 680
Hpy99I	CGWCG	2 cut(s)	275, 535
HpyAV	CCTTC	3 cut(s)	43, 337, 346
HpyCH4III	ACNGT	4 cut(s)	82, 102, 473, 535
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 167, 176, 295, 323, 332, 380, 650
HpyF3I	CTNAG	1 cut(s)	149
Hsp92I	GRCGYC	2 cut(s)	5, 513
HspAI	GCGC	3 cut(s)	372, 389, 513
KasI	GGCGCC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	197, 301, 341, 495
LweI	GCATC	2 cut(s)	162, 540
MaeI	CTAG	2 cut(s)	576, 650
MalI	GATC	4 cut(s)	199, 303, 343, 497
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	4 cut(s)	197, 301, 341, 495
MboII	GAAGA	2 cut(s)	5, 568
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	193, 441
MluCI	AATT	1 cut(s)	671
Mly113I	GGCGCC	1 cut(s)	513
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	2 cut(s)	225, 288
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	4 cut(s)	95, 142, 206, 520
MspR9I	CCNGG	5 cut(s)	143, 206, 230, 314, 323
MvaI	CCWGG	3 cut(s)	230, 314, 323
MvnI	CGCG	2 cut(s)	90, 114
MwoI	GCNNNNNNNGC	8 cut(s)	111, 167, 176, 295, 323, 332, 380, 650
NarI	GGCGCC	1 cut(s)	513
NciI	CCSGG	2 cut(s)	143, 206
NdeII	GATC	4 cut(s)	197, 301, 341, 495
NlaIV	GGNNCC	5 cut(s)	127, 146, 191, 210, 514
NmeAIII	GCCGAG	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	527
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	107, 277, 297
PleI	GAGTC	1 cut(s)	464
PluTI	GGCGCC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	464
PpuMI	RGGWCCY	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	228, 312, 321
PspGI	CCWGG	3 cut(s)	228, 312, 321
PspN4I	GGNNCC	5 cut(s)	127, 146, 191, 210, 514
PspOMI	GGGCCC	1 cut(s)	189
PspPI	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 481, 677
PspPPI	RGGWCCY	1 cut(s)	145
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	685
RsaI	GTAC	2 cut(s)	48, 99
RsaNI	GTAC	2 cut(s)	47, 98
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	3 cut(s)	106, 276, 296
Sau3AI	GATC	4 cut(s)	197, 301, 341, 495
Sau96I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 481, 677
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	5 cut(s)	143, 206, 230, 314, 323
SduI	GDGCHC	2 cut(s)	193, 441
SfaNI	GCATC	2 cut(s)	162, 540
SfiI	GGCCNNNNNGGCC	1 cut(s)	323
SfoI	GGCGCC	1 cut(s)	514
SinI	GGWCC	4 cut(s)	125, 145, 208, 677
Sse9I	AATT	1 cut(s)	671
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	9 cut(s)	88, 105, 225, 250, 276, 295, 333, 453, 590
SspDI	GGCGCC	1 cut(s)	512
SspMI	CTAG	2 cut(s)	576, 650
SstI	GAGCTC	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	5 cut(s)	141, 204, 228, 312, 321
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	4 cut(s)	82, 102, 473, 535
TaqI	TCGA	3 cut(s)	156, 441, 530
TasI	AATT	1 cut(s)	671
TauI	GCSGC	3 cut(s)	108, 278, 298
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	3 cut(s)	311, 470, 478
TspRI	CASTG	3 cut(s)	311, 470, 478
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	4 cut(s)	125, 145, 208, 677
XapI	RAATTY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XspI	CTAG	2 cut(s)	576, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.