Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

31083434 .. 31084009

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG251700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGGAGTAAAAGCAAGAGGGAGAAGCATTTGCCGGAAACGAGCGACGATGATTCACCGTCGTCCTCTCCTTCAAGCTCTGACTCCGCGTTCCAACACGGTGCCGTGGTCAAAGACCGGGTCCTCAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACACGAACCCATCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCAGACCTTGACGCCGTCCTCAAAGAGCTTCTACGGCAGGATCAGTGGCACCTGGCTCTCCAAGCCTTCTCCGCCTTCCGATCCGAATACCAACCCGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCTCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACTGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.48

Weight (kDa)

5.58

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccB1I	GGYRCC	2 cut(s)	101, 273
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	87, 214, 297
AclWI	GGATC	3 cut(s)	168, 273, 300
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	4 cut(s)	162, 163, 193, 366
AgsI	TTSAA	1 cut(s)	75
AjnI	CCWGG	2 cut(s)	192, 276
AluBI	AGCT	2 cut(s)	78, 253
AluI	AGCT	2 cut(s)	78, 253
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	3 cut(s)	168, 273, 300
AoxI	GGCC	2 cut(s)	135, 165
ApaI	GGGCCC	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspS9I	GGNCC	3 cut(s)	121, 165, 166
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	121
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	101, 273
BanII	GRGCYC	1 cut(s)	169
BbvCI	CCTCAGC	1 cut(s)	125
BccI	CCATC	3 cut(s)	146, 196, 364
BceAI	ACGGC	4 cut(s)	89, 131, 224, 275
BciT130I	CCWGG	2 cut(s)	194, 278
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	119, 194, 278
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	121, 165, 166
BmiI	GGNNCC	4 cut(s)	103, 122, 167, 275
BmrFI	CCNGG	3 cut(s)	119, 194, 278
BmsI	GCATC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	105, 192, 339
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 163, 193, 366
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	194, 278
BseDI	CCNNGG	3 cut(s)	105, 192, 339
BseGI	GGATG	3 cut(s)	138, 188, 375
BseLI	CCNNNNNNNGG	4 cut(s)	162, 163, 193, 366
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	137, 167
BshNI	GGYRCC	2 cut(s)	101, 273
BsiSI	CCGG	2 cut(s)	35, 118
BslI	CCNNNNNNNGG	4 cut(s)	162, 163, 193, 366
BsmAI	GTCTC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	137, 167
Bso31I	GGTCTC	1 cut(s)	202
Bsp120I	GGGCCC	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	173, 265, 305
BspACI	CCGC	3 cut(s)	87, 214, 297
BspANI	GGCC	2 cut(s)	137, 167
BspCNI	CTCAG	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	4 cut(s)	103, 122, 167, 275
BspPI	GGATC	3 cut(s)	168, 273, 300
BspT107I	GGYRCC	2 cut(s)	101, 273
BspTNI	GGTCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	105, 192, 339
BssMI	GATC	3 cut(s)	173, 265, 305
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	194, 278
Bst4CI	ACNGT	2 cut(s)	60, 101
BstACI	GRCGYC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	125
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	138, 188, 375
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	176, 268, 308
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	173, 265, 305
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 152, 259, 287, 296, 344
BstNI	CCWGG	2 cut(s)	194, 278
BstSCI	CCNGG	3 cut(s)	117, 192, 276
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	137, 167
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	138, 188, 375
BtsIMutI	CAGTG	2 cut(s)	275, 387
Cfr13I	GGNCC	3 cut(s)	121, 165, 166
CseI	GACGC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	3 cut(s)	175, 267, 307
DpnII	GATC	3 cut(s)	173, 265, 305
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	192, 276
EcoT38I	GRGCYC	1 cut(s)	169
FauI	CCCGC	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	3 cut(s)	125, 175, 382
FriOI	GRGCYC	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	137, 167
HapII	CCGG	2 cut(s)	35, 118
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	53, 83
HpaII	CCGG	2 cut(s)	35, 118
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	5 cut(s)	82, 178, 229, 305, 310
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	2 cut(s)	50, 64
HpyAV	CCTTC	3 cut(s)	81, 301, 310
HpyCH4III	ACNGT	2 cut(s)	60, 101
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 152, 259, 287, 296, 344
HpyF3I	CTNAG	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	237
Kzo9I	GATC	3 cut(s)	173, 265, 305
LweI	GCATC	1 cut(s)	138
MalI	GATC	3 cut(s)	175, 267, 307
MboI	GATC	3 cut(s)	173, 265, 305
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	118, 201
MnlI	CCTC	9 cut(s)	12, 76, 127, 134, 167, 218, 254, 334, 370
MspI	CCGG	2 cut(s)	35, 118
MspR9I	CCNGG	3 cut(s)	119, 194, 278
MvaI	CCWGG	2 cut(s)	194, 278
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	6 cut(s)	143, 152, 259, 287, 296, 344
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	3 cut(s)	173, 265, 305
NlaIV	GGNNCC	4 cut(s)	103, 122, 167, 275
NmeAIII	GCCGAG	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	2 cut(s)	119, 239
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	192, 276
PspGI	CCWGG	2 cut(s)	192, 276
PspN4I	GGNNCC	4 cut(s)	103, 122, 167, 275
PspOMI	GGGCCC	1 cut(s)	165
PspPI	GGNCC	3 cut(s)	121, 165, 166
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	2 cut(s)	119, 239
Sau3AI	GATC	3 cut(s)	173, 265, 305
Sau96I	GGNCC	3 cut(s)	121, 165, 166
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	3 cut(s)	119, 194, 278
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	6 cut(s)	80, 234, 255, 279, 327, 345
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	1 cut(s)	121
SsiI	CCGC	3 cut(s)	87, 214, 297
StyD4I	CCNGG	3 cut(s)	117, 192, 276
TaaI	ACNGT	2 cut(s)	60, 101
TaqI	TCGA	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	2 cut(s)	275, 394
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	2 cut(s)	275, 394
Tth111I	GACNNNGTC	2 cut(s)	119, 239
VpaK11BI	GGWCC	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.