Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

33691842 .. 33692366

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGTCCTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCCGTACCCGGACCATTCACAACCACACCCACCCCCACCGTAGTCCGCGTTCCCACACGGTGCCTTGGTCAAAGACCGGGTCCTCGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAATATCCTACCCGAACCCATCCCTGGTCTCCAAAACCCTATCCAGCCTAATCAAGTCGGACCTTGACGCCGTCCTCAAAGAGCTTCTACGGCGGGATCAATGGCACCGGCTCTCCGTGCCTTCTCCGCCTTCCGATCCGAATACCAACCCGACCCGTCCGTCTACGCCGAGGTGGCTTTGGCTCTCACCGAAATGGGATGGTGGAGGAGATAGACACTCGGTTTGTGAGCTCGAAAAGGAGAGTGAGGAGTCCGGTGGGACGTTGATAAGGTCCGGTGGTTTCGGAGATGAGAGAGAAATCGACTTCATGGGTATTTTAGGAAGTGTAAAAATATTTGAGATGAAATATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.3

Weight (kDa)

9.23

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
AccB1I	GGYRCC	2 cut(s)	102, 273
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	88, 262, 296
AclWI	GGATC	2 cut(s)	273, 299
AcyI	GRCGYC	2 cut(s)	5, 237
AdeI	CACNNNGTG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	4 cut(s)	50, 162, 163, 193
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	253, 400
AluI	AGCT	2 cut(s)	253, 400
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	273, 299
AoxI	GGCC	2 cut(s)	135, 165
ApaI	GGGCCC	1 cut(s)	169
ArsI	GACNNNNNNTTYG	4 cut(s)	106, 138, 375, 407
AspS9I	GGNCC	6 cut(s)	53, 122, 165, 166, 229, 441
AsuC2I	CCSGG	2 cut(s)	51, 120
AsuHPI	GGTGA	2 cut(s)	8, 348
AvaII	GGWCC	4 cut(s)	53, 122, 229, 441
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	2 cut(s)	102, 273
BanII	GRGCYC	2 cut(s)	169, 402
Bbv12I	GWGCWC	1 cut(s)	402
BccI	CCATC	3 cut(s)	146, 196, 362
BceAI	ACGGC	3 cut(s)	131, 224, 275
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	2 cut(s)	51, 120
BcoDI	GTCTC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	343
Bme1390I	CCNGG	3 cut(s)	51, 120, 194
Bme18I	GGWCC	4 cut(s)	53, 122, 229, 441
BmgT120I	GGNCC	6 cut(s)	53, 122, 165, 166, 229, 441
BmiI	GGNNCC	4 cut(s)	104, 123, 167, 275
BmrFI	CCNGG	3 cut(s)	51, 120, 194
BmsI	GCATC	1 cut(s)	138
BpuMI	CCSGG	2 cut(s)	51, 120
BsaHI	GRCGYC	2 cut(s)	5, 237
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	106, 192, 338
BsaWI	WCCGGW	2 cut(s)	422, 443
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 162, 163, 193
Bse118I	RCCGGY	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	106, 192, 338
BseGI	GGATG	3 cut(s)	138, 188, 373
BseLI	CCNNNNNNNGG	4 cut(s)	50, 162, 163, 193
BseRI	GAGGAG	2 cut(s)	390, 431
BseSI	GKGCMC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	137, 167
BshNI	GGYRCC	2 cut(s)	102, 273
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	5 cut(s)	51, 119, 277, 423, 444
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	4 cut(s)	50, 162, 163, 193
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	137, 167
Bso31I	GGTCTC	1 cut(s)	202
Bsp120I	GGGCCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	169, 402
Bsp143I	GATC	2 cut(s)	265, 304
BspACI	CCGC	3 cut(s)	88, 262, 296
BspANI	GGCC	2 cut(s)	137, 167
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	4 cut(s)	104, 123, 167, 275
BspPI	GGATC	2 cut(s)	273, 299
BspT107I	GGYRCC	2 cut(s)	102, 273
BspTNI	GGTCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	276
BssECI	CCNNGG	3 cut(s)	106, 192, 338
BssMI	GATC	2 cut(s)	265, 304
BssNI	GRCGYC	2 cut(s)	5, 237
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	82, 102
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	2 cut(s)	5, 237
BstF5I	GGATG	3 cut(s)	138, 188, 373
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	268, 307
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	2 cut(s)	265, 304
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 152, 259, 286, 295, 343
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	3 cut(s)	49, 118, 192
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	137, 167
BtsCI	GGATG	3 cut(s)	138, 188, 373
Cfr10I	RCCGGY	1 cut(s)	276
Cfr13I	GGNCC	6 cut(s)	53, 122, 165, 166, 229, 441
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	1 cut(s)	478
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	2 cut(s)	267, 306
DpnII	GATC	2 cut(s)	265, 304
DraIII	CACNNNGTG	1 cut(s)	102
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	2 cut(s)	169, 402
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	4 cut(s)	53, 122, 229, 441
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	2 cut(s)	169, 402
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	481
FaiI	YATR	1 cut(s)	479
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	1 cut(s)	477
FauI	CCCGC	1 cut(s)	255
FblI	GTMKAC	1 cut(s)	332
FokI	GGATG	3 cut(s)	125, 175, 380
FriOI	GRGCYC	2 cut(s)	169, 402
HaeIII	GGCC	2 cut(s)	137, 167
HapII	CCGG	5 cut(s)	51, 119, 277, 423, 444
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	2 cut(s)	5, 237
Hin1II	CATG	1 cut(s)	481
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	5 cut(s)	51, 119, 277, 423, 444
HphI	GGTGA	2 cut(s)	8, 348
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	229, 304, 309, 455
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	43, 300, 309
HpyCH4III	ACNGT	2 cut(s)	82, 102
HpyCH4IV	ACGT	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 152, 259, 286, 295, 343
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	2 cut(s)	5, 237
Hsp92II	CATG	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	265, 304
LpnPI	CCDG	8 cut(s)	64, 132, 179, 206, 226, 290, 436, 457
LweI	GCATC	1 cut(s)	138
MaeII	ACGT	1 cut(s)	431
MalI	GATC	2 cut(s)	267, 306
MboI	GATC	2 cut(s)	265, 304
MboII	GAAGA	1 cut(s)	5
MhlI	GDGCHC	2 cut(s)	169, 402
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	9 cut(s)	19, 47, 127, 135, 167, 254, 333, 368, 409
MseI	TTAA	1 cut(s)	523
MslI	CAYNNNNRTG	1 cut(s)	361
MspI	CCGG	5 cut(s)	51, 119, 277, 423, 444
MspR9I	CCNGG	3 cut(s)	51, 120, 194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	6 cut(s)	143, 152, 259, 286, 295, 343
NciI	CCSGG	2 cut(s)	51, 120
NdeII	GATC	2 cut(s)	265, 304
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	4 cut(s)	104, 123, 167, 275
NmeAIII	GCCGAG	1 cut(s)	363
PflFI	GACNNNGTC	2 cut(s)	120, 239
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	4 cut(s)	104, 123, 167, 275
PspOMI	GGGCCC	1 cut(s)	165
PspPI	GGNCC	6 cut(s)	53, 122, 165, 166, 229, 441
PspPPI	RGGWCCY	1 cut(s)	122
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsyI	GACNNNGTC	2 cut(s)	120, 239
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	265, 304
Sau96I	GGNCC	6 cut(s)	53, 122, 165, 166, 229, 441
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	3 cut(s)	51, 120, 194
SduI	GDGCHC	2 cut(s)	169, 402
SetI	ASST	7 cut(s)	35, 234, 255, 344, 402, 434, 443
SfaNI	GCATC	1 cut(s)	138
SinI	GGWCC	4 cut(s)	53, 122, 229, 441
SmiMI	CAYNNNNRTG	1 cut(s)	361
SsiI	CCGC	3 cut(s)	88, 262, 296
SspI	AATATT	2 cut(s)	504, 518
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	3 cut(s)	49, 118, 192
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	82, 102
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	132, 402, 471
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TspDTI	ATGAA	1 cut(s)	466
TspGWI	ACGGA	2 cut(s)	274, 318
Tth111I	GACNNNGTC	2 cut(s)	120, 239
VpaK11BI	GGWCC	4 cut(s)	53, 122, 229, 441
XmiI	GTMKAC	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.