Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

28900773 .. 28901477

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGTCGTCTCTTCACCCAAACCCGACCACCTTCCTCAAACCGGTACCCAGACCATTCACAACCACGCCCACCCCCACCGTAGTCCGCGTTCCCGTACGGTGCGGCCCACGCGACAAGCGTGGACCCTTGGTCAAAGGCCGGGTCCTTAGCATCGAGGCCATCCAAGCCGTCCAAGCCCTCAAACGGGCCCAAAGATCCGACCCGGACCCATCCCACCTCCCCGCCCTGGTCTCCAAAACCCTCTCCCGCCTAATCAAGTCCGACCTCGTCGCCGCCCTCAAAGAGCTTCTGCGGCAGGATCAGTGCCACCTGGCCCTCCAGGCCTTCTCCGCCTTCCGATCCGAATACCAACCCGACCTGTCCGTCTACGCCGAGGTGGCTTTGGCGCTCGCCAGAAATGGGATGGTGGAGGAGATAGACACTTTGGTTTGTGAGCTCGAAAAGGAGAGCGAGGGAGTCGTCCAGTGGGACAGTGACAAGGGCCTGATAAGGTTGATCAAGGCCGTCATTGGCGCCGACCGGAGGGAATCGACGGTCAGGATTTACGGGATGCTGAAGAGGAATGGATGGGGGTCTTGTAGTTTTAAAGCGGATGAGTATATGGTTAGGGTGTTGAGCAAGGGATTGAGGAGGCTGGGTGAGGCTGAACTAGCTGATGAGGTTGATGTCAAATTTGGTCCACAGCTGTTATTTCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

25.96

Weight (kDa)

9.21

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	2 cut(s)	46, 515
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	2 cut(s)	90, 114
AciI	CCGC	8 cut(s)	88, 105, 225, 250, 276, 295, 333, 593
AclWI	GGATC	3 cut(s)	192, 309, 336
AcsI	RAATTY	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	2 cut(s)	5, 516
AfaI	GTAC	2 cut(s)	48, 99
AfiI	CCNNNNNNNGG	6 cut(s)	43, 186, 187, 229, 402, 525
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	698
AhdI	GACNNNNNGTC	1 cut(s)	131
AjnI	CCWGG	3 cut(s)	228, 312, 321
AluBI	AGCT	4 cut(s)	289, 439, 656, 688
AluI	AGCT	4 cut(s)	289, 439, 656, 688
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	2 cut(s)	15, 238
AlwI	GGATC	3 cut(s)	192, 309, 336
AoxI	GGCC	8 cut(s)	106, 139, 159, 189, 315, 324, 484, 504
ApaI	GGGCCC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	674
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AsiGI	ACCGGT	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	46
AspLEI	GCGC	2 cut(s)	391, 518
AspS9I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 484, 680
AsuC2I	CCSGG	2 cut(s)	143, 206
AsuHPI	GGTGA	2 cut(s)	8, 653
AvaII	GGWCC	4 cut(s)	125, 145, 208, 680
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	2 cut(s)	46, 515
BanII	GRGCYC	2 cut(s)	193, 441
Bbv12I	GWGCWC	1 cut(s)	441
BccI	CCATC	4 cut(s)	170, 220, 400, 564
BceAI	ACGGC	2 cut(s)	155, 491
BciT130I	CCWGG	3 cut(s)	230, 314, 323
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	2 cut(s)	143, 206
BcoDI	GTCTC	2 cut(s)	15, 238
BfaI	CTAG	1 cut(s)	653
BfoI	RGCGCY	2 cut(s)	392, 519
BglI	GCCNNNNNGGC	2 cut(s)	323, 380
BisI	GCNGC	3 cut(s)	106, 276, 296
BlsI	GCNGC	3 cut(s)	107, 277, 297
Bme1390I	CCNGG	5 cut(s)	143, 206, 230, 314, 323
Bme18I	GGWCC	4 cut(s)	125, 145, 208, 680
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmgT120I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 484, 680
BmiI	GGNNCC	6 cut(s)	48, 127, 146, 191, 210, 517
BmrFI	CCNGG	5 cut(s)	143, 206, 230, 314, 323
BmsI	GCATC	2 cut(s)	162, 543
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	143, 206
BsaHI	GRCGYC	2 cut(s)	5, 516
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	129, 228, 375
BsaWI	WCCGGW	2 cut(s)	43, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	6 cut(s)	43, 186, 187, 229, 402, 525
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	466
BseBI	CCWGG	3 cut(s)	230, 314, 323
BseDI	CCNNGG	3 cut(s)	129, 228, 375
BseGI	GGATG	6 cut(s)	162, 212, 411, 558, 575, 601
BseLI	CCNNNNNNNGG	6 cut(s)	43, 186, 187, 229, 402, 525
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	428, 646
BseSI	GKGCMC	1 cut(s)	193
BseYI	CCCAGC	1 cut(s)	637
Bsh1236I	CGCG	2 cut(s)	90, 114
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 486, 506
BshNI	GGYRCC	2 cut(s)	46, 515
BshTI	ACCGGT	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	4 cut(s)	44, 142, 206, 523
BsiWI	CGTACG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	6 cut(s)	43, 186, 187, 229, 402, 525
BsmAI	GTCTC	2 cut(s)	15, 238
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 486, 506
Bso31I	GGTCTC	1 cut(s)	238
Bsp120I	GGGCCC	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	193, 441
Bsp143I	GATC	4 cut(s)	197, 301, 341, 498
BspACI	CCGC	8 cut(s)	88, 105, 225, 250, 276, 295, 333, 593
BspANI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 486, 506
BspFNI	CGCG	2 cut(s)	90, 114
BspLI	GGNNCC	6 cut(s)	48, 127, 146, 191, 210, 517
BspPI	GGATC	3 cut(s)	192, 309, 336
BspT107I	GGYRCC	2 cut(s)	46, 515
BspTNI	GGTCTC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	129, 228, 375
BssMI	GATC	4 cut(s)	197, 301, 341, 498
BssNI	GRCGYC	2 cut(s)	5, 516
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	3 cut(s)	230, 314, 323
Bst4CI	ACNGT	4 cut(s)	82, 102, 476, 538
Bst6I	CTCTTC	2 cut(s)	18, 554
BstACI	GRCGYC	2 cut(s)	5, 516
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	6 cut(s)	162, 212, 411, 558, 575, 601
BstFNI	CGCG	2 cut(s)	90, 114
BstH2I	RGCGCY	2 cut(s)	392, 519
BstHHI	GCGC	2 cut(s)	391, 518
BstKTI	GATC	4 cut(s)	200, 304, 344, 501
BstMAI	GTCTC	2 cut(s)	15, 238
BstMBI	GATC	4 cut(s)	197, 301, 341, 498
BstMCI	CGRYCG	1 cut(s)	523
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 167, 176, 295, 323, 332, 380, 653
BstNI	CCWGG	3 cut(s)	230, 314, 323
BstSCI	CCNGG	5 cut(s)	141, 204, 228, 312, 321
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	2 cut(s)	90, 114
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 486, 506
BtsCI	GGATG	6 cut(s)	162, 212, 411, 558, 575, 601
BtsIMutI	CAGTG	3 cut(s)	311, 473, 481
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	2 cut(s)	391, 518
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 484, 680
Csp6I	GTAC	2 cut(s)	47, 98
CspAI	ACCGGT	1 cut(s)	43
CviQI	GTAC	2 cut(s)	47, 98
DdeI	CTNAG	1 cut(s)	149
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	4 cut(s)	199, 303, 343, 500
DpnII	GATC	4 cut(s)	197, 301, 341, 498
DraI	TTTAAA	1 cut(s)	589
DrdI	GACNNNNNNGTC	1 cut(s)	365
DriI	GACNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	18, 554
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EarI	CTCTTC	2 cut(s)	18, 554
EciI	GGCGGA	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	326
Eco24I	GRGCYC	2 cut(s)	193, 441
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	4 cut(s)	125, 145, 208, 680
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	439
EcoO109I	RGGNCCY	2 cut(s)	145, 484
EcoRII	CCWGG	3 cut(s)	228, 312, 321
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	193, 441
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	15
FaiI	YATR	2 cut(s)	603, 605
FaqI	GGGAC	1 cut(s)	485
FauI	CCCGC	2 cut(s)	232, 257
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	3 cut(s)	106, 276, 296
FokI	GGATG	6 cut(s)	149, 199, 418, 565, 582, 608
FriOI	GRGCYC	2 cut(s)	193, 441
Fsp4HI	GCNGC	3 cut(s)	106, 276, 296
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	2 cut(s)	390, 517
GluI	GCNGC	3 cut(s)	106, 276, 296
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	2 cut(s)	392, 519
HaeIII	GGCC	8 cut(s)	108, 141, 161, 191, 317, 326, 486, 506
HapII	CCGG	4 cut(s)	44, 142, 206, 523
HhaI	GCGC	2 cut(s)	391, 518
Hin1I	GRCGYC	2 cut(s)	5, 516
Hin6I	GCGC	2 cut(s)	389, 516
HinP1I	GCGC	2 cut(s)	389, 516
HinfI	GANTC	2 cut(s)	459, 530
HpaII	CCGG	4 cut(s)	44, 142, 206, 523
HphI	GGTGA	2 cut(s)	8, 653
Hpy166II	GTNNAC	3 cut(s)	125, 370, 683
Hpy188I	TCNGA	4 cut(s)	202, 265, 341, 346
Hpy188III	TCNNGA	1 cut(s)	541
Hpy8I	GTNNAC	3 cut(s)	125, 370, 683
Hpy99I	CGWCG	3 cut(s)	10, 275, 538
HpyAV	CCTTC	3 cut(s)	43, 337, 346
HpyCH4III	ACNGT	4 cut(s)	82, 102, 476, 538
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 167, 176, 295, 323, 332, 380, 653
HpyF3I	CTNAG	1 cut(s)	149
Hsp92I	GRCGYC	2 cut(s)	5, 516
HspAI	GCGC	2 cut(s)	389, 516
KasI	GGCGCC	1 cut(s)	515
KpnI	GGTACC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	197, 301, 341, 498
LweI	GCATC	2 cut(s)	162, 543
MaeI	CTAG	1 cut(s)	653
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	4 cut(s)	199, 303, 343, 500
MboI	GATC	4 cut(s)	197, 301, 341, 498
MboII	GAAGA	2 cut(s)	5, 571
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	193, 441
MluCI	AATT	1 cut(s)	674
Mly113I	GGCGCC	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	2 cut(s)	225, 288
MseI	TTAA	2 cut(s)	588, 703
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	4 cut(s)	44, 142, 206, 523
MspR9I	CCNGG	5 cut(s)	143, 206, 230, 314, 323
MvaI	CCWGG	3 cut(s)	230, 314, 323
MvnI	CGCG	2 cut(s)	90, 114
MwoI	GCNNNNNNNGC	8 cut(s)	111, 167, 176, 295, 323, 332, 380, 653
NarI	GGCGCC	1 cut(s)	516
NciI	CCSGG	2 cut(s)	143, 206
NdeII	GATC	4 cut(s)	197, 301, 341, 498
NlaIV	GGNNCC	6 cut(s)	48, 127, 146, 191, 210, 517
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	476
PceI	AGGCCT	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	530
Pfl23II	CGTACG	1 cut(s)	97
PflFI	GACNNNGTC	1 cut(s)	269
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	107, 277, 297
PleI	GAGTC	1 cut(s)	467
PluTI	GGCGCC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	467
PpuMI	RGGWCCY	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	228, 312, 321
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	3 cut(s)	228, 312, 321
PspLI	CGTACG	1 cut(s)	97
PspN4I	GGNNCC	6 cut(s)	48, 127, 146, 191, 210, 517
PspOMI	GGGCCC	1 cut(s)	189
PspPI	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 484, 680
PspPPI	RGGWCCY	1 cut(s)	145
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PsuI	RGATCY	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	2 cut(s)	48, 99
RsaNI	GTAC	2 cut(s)	47, 98
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	588, 703
SatI	GCNGC	3 cut(s)	106, 276, 296
Sau3AI	GATC	4 cut(s)	197, 301, 341, 498
Sau96I	GGNCC	9 cut(s)	107, 125, 145, 189, 190, 208, 316, 484, 680
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	5 cut(s)	143, 206, 230, 314, 323
SduI	GDGCHC	2 cut(s)	193, 441
SfaNI	GCATC	2 cut(s)	162, 543
SfiI	GGCCNNNNNGGCC	1 cut(s)	323
SfoI	GGCGCC	1 cut(s)	517
SinI	GGWCC	4 cut(s)	125, 145, 208, 680
Sse9I	AATT	1 cut(s)	674
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	8 cut(s)	88, 105, 225, 250, 276, 295, 333, 593
SspDI	GGCGCC	1 cut(s)	515
SspMI	CTAG	1 cut(s)	653
SstI	GAGCTC	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	5 cut(s)	141, 204, 228, 312, 321
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	4 cut(s)	82, 102, 476, 538
TaqI	TCGA	3 cut(s)	156, 441, 533
TasI	AATT	1 cut(s)	674
TauI	GCSGC	3 cut(s)	108, 278, 298
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	588, 703
Tru9I	TTAA	2 cut(s)	588, 703
TscAI	CASTG	3 cut(s)	311, 473, 481
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	3 cut(s)	311, 473, 481
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	4 cut(s)	125, 145, 208, 680
XapI	RAATTY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.