Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Reverse (-)

68813362 .. 68815184

Gene Structure 1823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGGAGTAAAAGCAAGAGGGAGAAGCATTTTCCGGAAATGAGCGACGATGATTCACCGTCATCCTCTCCTTCAAGCTCCGACTCCGCGTTCCCACACGGTGCCTTGGTCAAAGACCGGGTCCTCGCATCGAGGCCATCCAAGCCGTCCCAGCCCTCAAACGGGCCAAAAGATCCGACCCGAACCCATCCCCTGGTCTCCAAAACCCTCTCCCACCTAATCAAGTCAGACCTTGACGCCGTCCTCAAAGATCTTCTACGGCAGATCGGTGGCACACGGCTCTCCGAGCCTTCTCTCGCCTTCCGATCCGAATACCAACCCGACCCGTCCGTCTACACCGAGGTGGCTTTGGCTCTCGCTAGAAATGGGATGGTGGAGGAGATAGACACTCTGGTTTGTGAGCTCGAAAAGGAGAGTGAGGAGTCCGGTGGGACGTTGATAAGGTCCAATGGTTTCGGAGATGAGAGAGAGAGAATCGACTTCAAGGGTATTTTAGGAAGTAGTATCACCATAAGAGAAGTGTTAAGAGTAGGCCAACAAAAATACGACCATCCGGATGAGGTAGCGAAAAACACTTCCTCCATGCTCGGCAGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

21.77

Weight (kDa)

5.78

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	101
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	89
AccIII	TCCGGA	2 cut(s)	34, 553
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	3 cut(s)	167, 300, 588
AcyI	GRCGYC	1 cut(s)	237
AdeI	CACNNNGTG	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	161, 162, 193
AgsI	TTSAA	2 cut(s)	75, 484
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	2 cut(s)	78, 403
AluI	AGCT	2 cut(s)	78, 403
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	3 cut(s)	167, 300, 588
Aor13HI	TCCGGA	2 cut(s)	34, 553
AoxI	GGCC	3 cut(s)	134, 164, 532
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AspS9I	GGNCC	3 cut(s)	121, 164, 444
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	48, 499
AvaII	GGWCC	2 cut(s)	121, 444
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BccI	CCATC	4 cut(s)	145, 195, 364, 558
BceAI	ACGGC	4 cut(s)	130, 224, 275, 293
BciT130I	CCWGG	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	360
BglII	AGATCT	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	119, 194
Bme18I	GGWCC	2 cut(s)	121, 444
BmgT120I	GGNCC	3 cut(s)	121, 164, 444
BmiI	GGNNCC	2 cut(s)	103, 122
BmrFI	CCNGG	2 cut(s)	119, 194
BmsI	GCATC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	105, 192, 339
BsaWI	WCCGGW	3 cut(s)	34, 425, 553
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 162, 193
BseAI	TCCGGA	2 cut(s)	34, 553
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	105, 192, 339
BseGI	GGATG	6 cut(s)	62, 137, 187, 375, 550, 562
BseLI	CCNNNNNNNGG	3 cut(s)	161, 162, 193
BseRI	GAGGAG	2 cut(s)	392, 434
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	136, 166, 534
BshNI	GGYRCC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	4 cut(s)	35, 118, 426, 554
BslFI	GGGAC	2 cut(s)	133, 445
BslI	CCNNNNNNNGG	3 cut(s)	161, 162, 193
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	133, 445
BsnI	GGCC	3 cut(s)	136, 166, 534
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp13I	TCCGGA	2 cut(s)	34, 553
Bsp143I	GATC	5 cut(s)	172, 250, 264, 305, 593
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	3 cut(s)	136, 166, 534
BspEI	TCCGGA	2 cut(s)	34, 553
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	103, 122
BspPI	GGATC	3 cut(s)	167, 300, 588
BspT107I	GGYRCC	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	105, 192, 339
BssMI	GATC	5 cut(s)	172, 250, 264, 305, 593
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	60, 101
BstACI	GRCGYC	1 cut(s)	237
BstF5I	GGATG	6 cut(s)	62, 137, 187, 375, 550, 562
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	5 cut(s)	175, 253, 267, 308, 596
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	5 cut(s)	172, 250, 264, 305, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 151, 286
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	117, 192
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	3 cut(s)	172, 250, 593
BstYI	RGATCY	3 cut(s)	172, 250, 593
BsuRI	GGCC	3 cut(s)	136, 166, 534
BtsCI	GGATG	6 cut(s)	62, 137, 187, 375, 550, 562
Cfr13I	GGNCC	3 cut(s)	121, 164, 444
CseI	GACGC	1 cut(s)	245
CviAII	CATG	1 cut(s)	583
DpnI	GATC	5 cut(s)	174, 252, 266, 307, 595
DpnII	GATC	5 cut(s)	172, 250, 264, 305, 593
DraIII	CACNNNGTG	1 cut(s)	101
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	121, 444
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	586
FaiI	YATR	2 cut(s)	512, 584
FaqI	GGGAC	2 cut(s)	133, 445
FatI	CATG	1 cut(s)	582
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	6 cut(s)	49, 124, 174, 382, 537, 569
FriOI	GRGCYC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	360
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	136, 166, 534
HapII	CCGG	4 cut(s)	35, 118, 426, 554
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	586
HinfI	GANTC	4 cut(s)	53, 83, 422, 474
HpaII	CCGG	4 cut(s)	35, 118, 426, 554
HphI	GGTGA	2 cut(s)	48, 499
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	7 cut(s)	82, 177, 229, 286, 305, 310, 458
Hpy188III	TCNNGA	2 cut(s)	35, 554
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	81, 300, 310
HpyCH4III	ACNGT	2 cut(s)	60, 101
HpyCH4IV	ACGT	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 151, 286
HpySE526I	ACGT	1 cut(s)	434
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	586
Kpn2I	TCCGGA	2 cut(s)	34, 553
Kzo9I	GATC	5 cut(s)	172, 250, 264, 305, 593
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	48, 131, 164, 179, 206, 377, 439, 567
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	434
MalI	GATC	5 cut(s)	174, 252, 266, 307, 595
MboI	GATC	5 cut(s)	172, 250, 264, 305, 593
MboII	GAAGA	1 cut(s)	245
MflI	RGATCY	3 cut(s)	172, 250, 593
MhlI	GDGCHC	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	77, 431
MmeI	TCCRAC	2 cut(s)	105, 200
MroI	TCCGGA	2 cut(s)	34, 553
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	2 cut(s)	341, 555
MspI	CCGG	4 cut(s)	35, 118, 426, 554
MspR9I	CCNGG	2 cut(s)	119, 194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	142, 151, 286
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	5 cut(s)	172, 250, 264, 305, 593
NlaIII	CATG	1 cut(s)	586
NlaIV	GGNNCC	2 cut(s)	103, 122
NmeAIII	GCCGAG	1 cut(s)	567
OliI	CACNNNNGTG	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	53, 474
PflFI	GACNNNGTC	2 cut(s)	119, 239
PflMI	CCANNNNNTGG	1 cut(s)	193
PleI	GAGTC	2 cut(s)	77, 430
PpsI	GAGTC	2 cut(s)	77, 430
PpuMI	RGGWCCY	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	103, 122
PspPI	GGNCC	3 cut(s)	121, 164, 444
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	3 cut(s)	172, 250, 593
PsyI	GACNNNGTC	2 cut(s)	119, 239
RseI	CAYNNNNRTG	2 cut(s)	341, 555
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	524
Sau3AI	GATC	5 cut(s)	172, 250, 264, 305, 593
Sau96I	GGNCC	3 cut(s)	121, 164, 444
SchI	GAGTC	2 cut(s)	77, 431
ScrFI	CCNGG	2 cut(s)	119, 194
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	8 cut(s)	80, 219, 234, 345, 405, 437, 446, 564
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	2 cut(s)	121, 444
SmiMI	CAYNNNNRTG	2 cut(s)	341, 555
SsiI	CCGC	1 cut(s)	87
SspMI	CTAG	1 cut(s)	360
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	117, 192
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	60, 101
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	3 cut(s)	131, 405, 477
TfiI	GAWTC	2 cut(s)	53, 474
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TspGWI	ACGGA	1 cut(s)	319
Tth111I	GACNNNGTC	2 cut(s)	119, 239
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	121, 444
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.