Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000291.1

Orthogroup ID

OG0005894

Physical Location & Seq

Genomic Coordinates Forward (+)

96690 .. 97419

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000291.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgagcgacgatgattcaccgtcgtcctctccttcaagctccgacgtatctaaccggtcctcgaaacggcgtcgtcgccaccgtcacataatcgacgacggatccagaagagaaagagaaaggagaagggagaggagagagaaacggcgaaccctcaaacgggcccaaagatttgagccgaacccatccctggtctccaaaaccctctccctcctaatcaagtcagaccttgacgccgtcctcaaagagcttctacagcaggatcggtggcacctggctctccagaccttctccgccttccgatccgaataccaacccgacatgtccgtctacgccgaggtggctttggctctccccagaaatgggatggtggaggagatagacactctggtttgtgagctcgaaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990825

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.98

Weight (kDa)

9.78

Isoelectric Point (pI)

110.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27750
fragaria_vesca	FvH4_6g31920
malus_domestica	MD17G1189400.v1.1
prunus_persica	Prupe.3G064300_v2.0.a1
pyrus_communis	pycom09g12430
rosa_chinensis	RchiOBHm_Chr2g0139281
rosa_laevigata	RLG00000019805
rosa_multiflora	Rmu_co8233133.1_g000001 Rmu_sc0000315.1_g000026 Rmu_sc0000743.1_g000002 Rmu_sc0004267.1_g000017 Rmu_sc0033759.1_g000002 Rmu_ssc0000291.1_g000024
rosa_roxburghii	Rroxscaffold_1G00048750 Rroxscaffold_2G00105500 Rroxscaffold_5G00355110
rosa_rugosa	Rorug02G0356700
rosa_samantha	Rh2AG406500 Rh2BG416900 Rh2CG392700 Rh5BG251700 Rh6CG376000 Rh7BG442000 Rh7BG442300 Rh7DG052400
rosa_wichuraiana	Rw2G032940 Rw3G008500 Rw6G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	270
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	1 cut(s)	294
AclWI	GGATC	4 cut(s)	96, 109, 270, 297
AcyI	GRCGYC	2 cut(s)	70, 234
AfiI	CCNNNNNNNGG	6 cut(s)	66, 159, 160, 190, 362, 363
AflIII	ACRYGT	1 cut(s)	321
AgeI	ACCGGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	189, 273
AluBI	AGCT	3 cut(s)	39, 250, 400
AluI	AGCT	3 cut(s)	39, 250, 400
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	4 cut(s)	96, 109, 270, 297
AoxI	GGCC	1 cut(s)	162
ApaI	GGGCCC	1 cut(s)	166
AsiGI	ACCGGT	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	57, 162, 163
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	270
BanII	GRGCYC	2 cut(s)	166, 402
Bbv12I	GWGCWC	1 cut(s)	402
BccI	CCATC	2 cut(s)	193, 361
BceAI	ACGGC	3 cut(s)	83, 161, 221
BciT130I	CCWGG	2 cut(s)	191, 275
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	191, 275
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	57, 162, 163
BmiI	GGNNCC	3 cut(s)	103, 164, 272
BmrFI	CCNGG	2 cut(s)	191, 275
BpmI	CTGGAG	1 cut(s)	266
BsaHI	GRCGYC	2 cut(s)	70, 234
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	189, 336
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 159, 160, 190, 362, 363
Bse118I	RCCGGY	1 cut(s)	54
BseBI	CCWGG	2 cut(s)	191, 275
BseDI	CCNNGG	2 cut(s)	189, 336
BseGI	GGATG	2 cut(s)	185, 372
BseLI	CCNNNNNNNGG	6 cut(s)	66, 159, 160, 190, 362, 363
BseRI	GAGGAG	2 cut(s)	148, 389
BseSI	GKGCMC	1 cut(s)	166
BshFI	GGCC	1 cut(s)	164
BshNI	GGYRCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	6 cut(s)	66, 159, 160, 190, 362, 363
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	199
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	166, 402
Bsp143I	GATC	3 cut(s)	101, 262, 302
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	103, 164, 272
BspPI	GGATC	4 cut(s)	96, 109, 270, 297
BspT107I	GGYRCC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	54
BssAI	RCCGGY	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	189, 336
BssMI	GATC	3 cut(s)	101, 262, 302
BssNI	GRCGYC	2 cut(s)	70, 234
Bst2UI	CCWGG	2 cut(s)	191, 275
Bst4CI	ACNGT	2 cut(s)	21, 83
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	2 cut(s)	70, 234
BstF5I	GGATG	2 cut(s)	185, 372
BstKTI	GATC	3 cut(s)	104, 265, 305
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	101, 262, 302
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 341
BstNI	CCWGG	2 cut(s)	191, 275
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	189, 273
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	166
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	185, 372
Cfr10I	RCCGGY	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	57, 162, 163
CseI	GACGC	2 cut(s)	59, 242
CspAI	ACCGGT	1 cut(s)	54
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	8 cut(s)	39, 164, 178, 250, 278, 344, 350, 400
CviKI_1	RGCY	8 cut(s)	39, 164, 178, 250, 278, 344, 350, 400
DpnI	GATC	3 cut(s)	103, 264, 304
DpnII	GATC	3 cut(s)	101, 262, 302
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	283
Ecl136II	GAGCTC	1 cut(s)	400
Eco24I	GRGCYC	2 cut(s)	166, 402
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	189, 273
EcoT38I	GRGCYC	2 cut(s)	166, 402
FaeI	CATG	1 cut(s)	325
FaiI	YATR	2 cut(s)	89, 323
FatI	CATG	1 cut(s)	321
FblI	GTMKAC	1 cut(s)	330
FokI	GGATG	2 cut(s)	172, 379
FriOI	GRGCYC	2 cut(s)	166, 402
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	55
HgaI	GACGC	2 cut(s)	59, 242
Hin1I	GRCGYC	2 cut(s)	70, 234
Hin1II	CATG	1 cut(s)	325
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	4 cut(s)	43, 226, 302, 307
Hpy188III	TCNNGA	2 cut(s)	105, 283
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	7 cut(s)	11, 25, 47, 75, 78, 98, 101
HpyAV	CCTTC	4 cut(s)	42, 120, 298, 307
HpyCH4III	ACNGT	2 cut(s)	21, 83
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 341
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	2 cut(s)	70, 234
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	101, 262, 302
LmnI	GCTCC	1 cut(s)	44
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	3 cut(s)	103, 264, 304
MboI	GATC	3 cut(s)	101, 262, 302
MboII	GAAGA	1 cut(s)	120
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	166, 402
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	9 cut(s)	37, 70, 126, 164, 215, 221, 251, 331, 367
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	191, 275
MvaI	CCWGG	2 cut(s)	191, 275
MwoI	GCNNNNNNNGC	2 cut(s)	256, 341
NdeII	GATC	3 cut(s)	101, 262, 302
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	3 cut(s)	103, 164, 272
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	325
PciI	ACATGT	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	236
PinAI	ACCGGT	1 cut(s)	54
PscI	ACATGT	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	189, 273
PspGI	CCWGG	2 cut(s)	189, 273
PspN4I	GGNNCC	3 cut(s)	103, 164, 272
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	57, 162, 163
PsuI	RGATCY	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	402
Sau3AI	GATC	3 cut(s)	101, 262, 302
Sau96I	GGNCC	3 cut(s)	57, 162, 163
ScrFI	CCNGG	2 cut(s)	191, 275
SduI	GDGCHC	2 cut(s)	166, 402
SetI	ASST	9 cut(s)	41, 48, 231, 252, 276, 290, 342, 402, 410
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	57
SsiI	CCGC	1 cut(s)	294
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	189, 273
TaaI	ACNGT	2 cut(s)	21, 83
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	62, 93, 402
TfiI	GAWTC	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	2 cut(s)	114, 316
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	57
XceI	RCATGY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.